Wall clock time and date at job start Tue Mar 31 2020 21:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34240 * 117.00137 * 2 1 4 4 O 1.20821 * 119.99735 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00048 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47074 * 180.02562 * 5 3 2 7 7 C 1.36944 * 119.99493 * 265.55256 * 6 5 3 8 8 H 1.07997 * 119.99935 * 197.39716 * 7 6 5 9 9 C 1.38808 * 120.00121 * 17.40216 * 7 6 5 10 10 N 1.31622 * 120.00180 * 16.23237 * 9 7 6 11 11 Si 1.86800 * 119.99858 * 196.23696 * 9 7 6 12 12 H 1.48504 * 109.46925 * 89.99737 * 11 9 7 13 13 H 1.48500 * 109.47000 * 209.99664 * 11 9 7 14 14 H 1.48493 * 109.47290 * 329.99828 * 11 9 7 15 15 C 1.46502 * 120.00407 * 85.54971 * 6 5 3 16 16 C 1.52997 * 109.46875 * 269.99999 * 15 6 5 17 17 C 1.50706 * 109.46954 * 179.97438 * 16 15 6 18 18 O 1.21293 * 119.99673 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00114 * 180.02562 * 17 16 15 20 20 C 1.39917 * 119.99732 * 183.94215 * 19 17 16 21 21 C 1.38905 * 120.06181 * 333.53644 * 20 19 17 22 22 C 1.38106 * 119.98084 * 179.74021 * 21 20 19 23 23 C 1.38264 * 120.09682 * 0.51177 * 22 21 20 24 24 C 1.38496 * 120.11295 * 359.76751 * 23 22 21 25 25 F 1.35094 * 119.99099 * 179.97438 * 24 23 22 26 26 C 1.38351 * 120.01821 * 359.97438 * 24 23 22 27 27 C 1.50699 * 120.04550 * 180.02562 * 26 24 23 28 28 H 1.09003 * 109.47298 * 60.00008 * 1 2 3 29 29 H 1.09002 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47638 * 300.00049 * 1 2 3 31 31 H 1.08997 * 109.47574 * 59.99629 * 5 3 2 32 32 H 1.09006 * 109.46748 * 299.99466 * 5 3 2 33 33 H 0.97003 * 119.99708 * 180.02562 * 10 9 7 34 34 H 1.08997 * 109.46727 * 150.00267 * 15 6 5 35 35 H 1.08995 * 109.46895 * 30.00240 * 15 6 5 36 36 H 1.08997 * 109.47223 * 60.00573 * 16 15 6 37 37 H 1.08995 * 109.47556 * 299.99837 * 16 15 6 38 38 H 0.96997 * 120.00160 * 3.94263 * 19 17 16 39 39 H 1.08002 * 120.01000 * 0.02562 * 21 20 19 40 40 H 1.08001 * 119.94854 * 180.23358 * 22 21 20 41 41 H 1.07995 * 119.94493 * 179.73685 * 23 22 21 42 42 H 1.09008 * 109.46664 * 269.97296 * 27 26 24 43 43 H 1.08998 * 109.47652 * 29.97409 * 27 26 24 44 44 H 1.08999 * 109.47190 * 149.97727 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.2635 3.3110 -1.1820 8 1 4.8281 4.2316 -1.1814 9 6 3.8233 2.7676 -2.3811 10 7 2.8833 1.8463 -2.3804 11 14 4.5651 3.3439 -3.9957 12 1 5.7395 2.4990 -4.3304 13 1 3.5508 3.2314 -5.0745 14 1 4.9946 4.7594 -3.8659 15 6 4.0955 3.4094 1.2654 16 6 2.7560 4.0712 1.5948 17 6 2.8729 4.8212 2.8967 18 8 3.9244 4.8263 3.5013 19 7 1.8091 5.4864 3.3891 20 6 1.9397 6.2502 4.5541 21 6 2.9127 5.9283 5.4918 22 6 3.0437 6.6866 6.6386 23 6 2.2006 7.7598 6.8602 24 6 1.2253 8.0808 5.9307 25 9 0.4025 9.1296 6.1499 26 6 1.0934 7.3276 4.7777 27 6 0.0328 7.6766 3.7656 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9557 0.7810 -0.8907 32 1 3.9563 0.7807 0.8893 33 1 2.5760 1.4664 -3.2183 34 1 4.8664 4.1746 1.1754 35 1 4.3636 2.7155 2.0621 36 1 1.9851 3.3060 1.6848 37 1 2.4879 4.7651 0.7981 38 1 0.9531 5.4355 2.9359 39 1 3.5697 5.0881 5.3219 40 1 3.8028 6.4382 7.3655 41 1 2.3024 8.3486 7.7598 42 1 -0.8860 7.1400 4.0025 43 1 -0.1560 8.7497 3.7924 44 1 0.3731 7.3923 2.7699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362227773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:09 Heat of formation + Delta-G solvation = -110.290998 kcal Electronic energy + Delta-G solvation = -29506.600836 eV Core-core repulsion = 25146.874080 eV Total energy + Delta-G solvation = -4359.726756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.01558 -40.61378 -39.07573 -38.40677 -36.17990 -34.86165 -34.60489 -32.56374 -32.17797 -30.40349 -29.20827 -27.88901 -27.04748 -26.04414 -24.68372 -22.97610 -21.78711 -21.24339 -20.16867 -19.65873 -18.12431 -17.40642 -16.95026 -16.32775 -16.23396 -15.96148 -15.76344 -15.53569 -15.46070 -15.18165 -14.95429 -14.70297 -13.93436 -13.82180 -13.59733 -13.49853 -13.24113 -13.13348 -12.78334 -12.48622 -12.44270 -12.15516 -11.96880 -11.85439 -11.66506 -11.36813 -11.29350 -11.14502 -10.92708 -10.62716 -10.47153 -10.24833 -10.11605 -9.99652 -9.68476 -9.44629 -9.17378 -8.72620 -8.64288 -8.16741 -7.14965 -5.99322 -3.36120 1.03823 1.10537 2.75696 3.04919 3.31558 3.38552 3.39644 3.56640 3.77236 3.97143 4.20543 4.39308 4.56441 4.68891 4.85320 4.96414 5.23441 5.25371 5.31452 5.39192 5.47054 5.52546 5.71983 5.74340 5.77919 5.84260 5.89357 5.96011 6.01595 6.02807 6.16696 6.25146 6.33040 6.38161 6.40607 6.57764 6.62832 6.90265 6.95529 7.04514 7.41123 7.60601 7.69643 8.11327 8.24694 8.94988 9.28803 9.62476 10.04749 11.11097 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014187 B = 0.002823 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.129092 B = 9914.757857 C =10518.357831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.381 6.381 3 C 0.468 3.532 4 O -0.510 6.510 5 C 0.187 3.813 6 N -0.566 5.566 7 C -0.255 4.255 8 H 0.081 0.919 9 C 0.003 3.997 10 N -0.908 5.908 11 Si 0.915 3.085 12 H -0.286 1.286 13 H -0.292 1.292 14 H -0.279 1.279 15 C 0.163 3.837 16 C -0.157 4.157 17 C 0.517 3.483 18 O -0.524 6.524 19 N -0.675 5.675 20 C 0.185 3.815 21 C -0.144 4.144 22 C -0.077 4.077 23 C -0.178 4.178 24 C 0.113 3.887 25 F -0.140 7.140 26 C -0.159 4.159 27 C -0.114 4.114 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.258 0.742 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.413 0.587 39 H 0.160 0.840 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 4.330 13.744 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.299 6.299 3 C 0.309 3.691 4 O -0.396 6.396 5 C 0.058 3.942 6 N -0.285 5.285 7 C -0.384 4.384 8 H 0.099 0.901 9 C -0.195 4.195 10 N -0.554 5.554 11 Si 0.745 3.255 12 H -0.213 1.213 13 H -0.219 1.219 14 H -0.205 1.205 15 C 0.036 3.964 16 C -0.200 4.200 17 C 0.307 3.693 18 O -0.399 6.399 19 N -0.319 5.319 20 C 0.088 3.912 21 C -0.164 4.164 22 C -0.096 4.096 23 C -0.197 4.197 24 C 0.094 3.906 25 F -0.118 7.118 26 C -0.163 4.163 27 C -0.171 4.171 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.135 0.865 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.250 0.750 39 H 0.178 0.822 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.139 4.558 13.900 15.203 hybrid contribution -0.999 0.724 -1.252 1.758 sum -5.138 5.282 12.648 14.638 Atomic orbital electron populations 1.22849 0.79880 1.01351 1.01140 1.86558 1.20903 1.36762 1.85635 1.25546 0.93573 0.80132 0.69822 1.90386 1.66798 1.36360 1.46054 1.20396 0.85390 0.86662 1.01754 1.44165 1.75033 1.06826 1.02477 1.19354 1.27918 1.08086 0.83011 0.90135 1.24885 0.96850 0.99419 0.98357 1.69709 1.28080 1.31458 1.26123 0.86077 0.78266 0.78362 0.82759 1.21257 1.21855 1.20477 1.20755 0.92795 0.95099 0.87768 1.22737 1.05088 1.00764 0.91379 1.21899 0.82209 0.77480 0.87710 1.90571 1.28504 1.60529 1.60345 1.43963 1.14718 1.48097 1.25167 1.17508 0.95906 0.90690 0.87093 1.21776 0.99755 1.02498 0.92344 1.20925 0.97871 0.93834 0.96943 1.21055 0.97449 1.00949 1.00275 1.17166 0.91617 0.86673 0.95183 1.91464 1.70778 1.54886 1.94689 1.19563 1.02463 0.96792 0.97496 1.20656 0.96415 1.02829 0.97207 0.92869 0.90182 0.93707 0.86460 0.93074 0.93131 0.92108 0.93238 0.87932 0.88348 0.74996 0.82242 0.84832 0.85021 0.90826 0.90839 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.56 101.05 1.07 1.77 16 2 O -0.38 -7.79 10.57 -39.28 -0.42 -8.20 16 3 C 0.47 10.56 5.96 36.00 0.21 10.77 16 4 O -0.51 -12.36 12.89 -18.75 -0.24 -12.61 16 5 C 0.19 4.13 5.53 -5.20 -0.03 4.10 16 6 N -0.57 -13.00 2.15 -174.62 -0.37 -13.38 16 7 C -0.25 -6.45 9.70 -15.06 -0.15 -6.60 16 8 H 0.08 2.02 7.86 -52.49 -0.41 1.60 16 9 C 0.00 0.07 5.01 -17.43 -0.09 -0.02 16 10 N -0.91 -24.30 8.88 55.49 0.49 -23.81 16 11 Si 0.92 20.84 29.58 -169.99 -5.03 15.81 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 C 0.16 3.22 5.00 -4.04 -0.02 3.20 16 16 C -0.16 -2.82 5.19 -27.88 -0.14 -2.97 16 17 C 0.52 8.34 7.71 -10.98 -0.08 8.26 16 18 O -0.52 -9.43 12.94 5.55 0.07 -9.36 16 19 N -0.68 -9.10 4.95 -9.87 -0.05 -9.15 16 20 C 0.18 2.49 6.42 -83.71 -0.54 1.95 16 21 C -0.14 -1.93 8.78 -39.38 -0.35 -2.27 16 22 C -0.08 -0.85 10.04 -39.62 -0.40 -1.25 16 23 C -0.18 -1.92 10.02 -39.48 -0.40 -2.32 16 24 C 0.11 1.37 7.24 -39.44 -0.29 1.09 16 25 F -0.14 -1.69 16.47 2.25 0.04 -1.65 16 26 C -0.16 -1.96 5.90 -104.37 -0.62 -2.57 16 27 C -0.11 -1.16 9.27 36.01 0.33 -0.83 16 28 H 0.05 0.94 8.13 -51.93 -0.42 0.52 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.12 2.82 6.36 -51.93 -0.33 2.49 16 32 H 0.05 0.97 7.95 -51.93 -0.41 0.56 16 33 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.06 1.22 7.98 -51.93 -0.41 0.81 16 35 H 0.05 0.92 7.89 -51.93 -0.41 0.51 16 36 H 0.10 1.94 5.89 -51.93 -0.31 1.63 16 37 H 0.10 1.91 8.14 -51.93 -0.42 1.48 16 38 H 0.41 4.71 7.46 -40.82 -0.30 4.41 16 39 H 0.16 2.35 5.59 -52.49 -0.29 2.06 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 43 H 0.07 0.72 7.64 -51.93 -0.40 0.32 16 44 H 0.07 0.71 7.01 -51.93 -0.36 0.35 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -29.92 368.84 -7.16 -37.08 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.74 Total: 7.38 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: -1.48 Total: 12.32 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.07 Total: -46.34 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.58 Total: -30.17 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.92 -7.16 -37.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362227773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.208 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds