Wall clock time and date at job start Tue Mar 31 2020 20:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00246 * 2 1 4 4 H 1.48504 * 109.46922 * 239.99853 * 3 2 1 5 5 H 1.48492 * 109.47446 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47403 * 119.99878 * 3 2 1 7 7 C 1.37882 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99640 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00030 * 0.28248 * 7 2 1 10 10 N 1.46499 * 109.47101 * 179.72175 * 9 7 2 11 11 C 1.34767 * 120.00228 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99811 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00504 * 179.97438 * 11 10 9 14 14 C 1.40162 * 120.00665 * 174.36919 * 13 11 10 15 15 C 1.38710 * 120.06754 * 335.22248 * 14 13 11 16 16 C 1.38394 * 119.95655 * 179.72619 * 15 14 13 17 17 F 1.35103 * 119.94283 * 180.31901 * 16 15 14 18 18 C 1.38464 * 120.11254 * 0.57607 * 16 15 14 19 19 C 1.38254 * 120.14935 * 359.69908 * 18 16 15 20 20 C 1.38527 * 120.03616 * 0.02562 * 19 18 16 21 21 O 1.36032 * 120.05425 * 180.02562 * 20 19 18 22 22 C 1.42901 * 117.00134 * 359.97400 * 21 20 19 23 23 C 1.52999 * 109.47312 * 180.02562 * 22 21 20 24 24 H 1.08994 * 109.86859 * 53.99470 * 23 22 21 25 25 C 1.54097 * 109.87773 * 175.00386 * 23 22 21 26 26 C 1.54811 * 104.18659 * 121.45487 * 25 23 22 27 27 C 1.54991 * 102.09528 * 20.88019 * 26 25 23 28 28 O 1.43745 * 109.87748 * 292.83546 * 23 22 21 29 29 H 0.97002 * 119.99455 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46646 * 299.71769 * 9 7 2 31 31 H 1.08993 * 109.47327 * 59.71818 * 9 7 2 32 32 H 0.97008 * 119.99673 * 359.97438 * 10 9 7 33 33 H 0.97001 * 119.99781 * 354.36626 * 13 11 10 34 34 H 1.08004 * 120.02480 * 0.02562 * 15 14 13 35 35 H 1.07997 * 119.92872 * 179.72246 * 18 16 15 36 36 H 1.07998 * 119.98361 * 180.02562 * 19 18 16 37 37 H 1.08998 * 109.47264 * 300.00544 * 22 21 20 38 38 H 1.09000 * 109.46844 * 59.99925 * 22 21 20 39 39 H 1.09002 * 110.48444 * 240.12753 * 25 23 22 40 40 H 1.08999 * 110.49290 * 2.77593 * 25 23 22 41 41 H 1.09006 * 110.90466 * 139.08014 * 26 25 23 42 42 H 1.09000 * 110.90874 * 262.67693 * 26 25 23 43 43 H 1.08993 * 110.61991 * 81.47528 * 27 26 25 44 44 H 1.08997 * 110.61993 * 204.47789 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 -0.0053 10 7 2.2028 -3.6128 -0.0102 11 6 1.7535 -4.8834 -0.0154 12 8 0.5581 -5.1055 -0.0164 13 7 2.6292 -5.9078 -0.0204 14 6 2.1665 -7.2260 0.0934 15 6 0.9494 -7.4849 0.7063 16 6 0.4921 -8.7868 0.8123 17 9 -0.6963 -9.0380 1.4036 18 6 1.2531 -9.8327 0.3182 19 6 2.4695 -9.5804 -0.2885 20 6 2.9305 -8.2791 -0.4031 21 8 4.1271 -8.0304 -1.0004 22 6 4.8565 -9.1589 -1.4867 23 6 6.1660 -8.6852 -2.1205 24 1 6.7196 -8.0701 -1.4112 25 6 7.0171 -9.9010 -2.5355 26 6 7.2246 -9.7167 -4.0585 27 6 6.9598 -8.2006 -4.2413 28 8 5.8876 -7.9316 -3.3124 29 1 -0.4849 0.8401 0.0004 30 1 0.6242 -2.5608 0.8844 31 1 0.6242 -2.5530 -0.8955 32 1 3.1565 -3.4355 -0.0097 33 1 3.5797 -5.7329 -0.1028 34 1 0.3567 -6.6706 1.0963 35 1 0.8954 -10.8479 0.4065 36 1 3.0606 -10.3982 -0.6734 37 1 5.0768 -9.8332 -0.6591 38 1 4.2598 -9.6829 -2.2333 39 1 7.9753 -9.8911 -2.0160 40 1 6.4817 -10.8286 -2.3328 41 1 8.2450 -9.9708 -4.3456 42 1 6.5043 -10.3083 -4.6236 43 1 7.8464 -7.6221 -3.9819 44 1 6.6455 -7.9862 -5.2627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488248255.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:51 Heat of formation + Delta-G solvation = -128.856264 kcal Electronic energy + Delta-G solvation = -28661.376563 eV Core-core repulsion = 24300.844756 eV Total energy + Delta-G solvation = -4360.531807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.67040 -40.74033 -39.89479 -39.00885 -37.09248 -34.60720 -34.09542 -32.66576 -32.36905 -31.36041 -30.08735 -28.91770 -26.98087 -26.11666 -23.65482 -22.82269 -22.15605 -22.01338 -21.32332 -20.28016 -18.58740 -18.17365 -17.85512 -16.87378 -16.79307 -16.33247 -16.08482 -15.82374 -15.60537 -15.42389 -14.96643 -14.80024 -14.72967 -14.55044 -14.09362 -13.99991 -13.81656 -13.14726 -13.04797 -12.97027 -12.61111 -12.27875 -12.15935 -11.98001 -11.94010 -11.84429 -11.64850 -11.36645 -11.19240 -10.98356 -10.94194 -10.86835 -10.29863 -10.28169 -10.05107 -9.42238 -9.40313 -8.74525 -8.52106 -8.00295 -7.56296 -6.15544 -4.22528 1.20910 1.23647 2.83109 3.10224 3.26785 3.31734 3.33705 3.42355 3.45737 3.93455 4.02673 4.26954 4.31458 4.38856 4.41409 4.56065 4.67869 4.74018 4.75790 4.86062 4.94764 4.99634 5.05906 5.19352 5.20642 5.27246 5.32244 5.40012 5.44806 5.51698 5.57321 5.77792 5.94239 6.06806 6.26646 6.50329 6.62020 6.85920 7.02186 7.30542 7.40706 7.50452 7.53359 7.82647 7.99627 8.68584 8.83337 9.17401 9.44119 10.94612 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008426 B = 0.002962 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3322.356447 B = 9449.965162 C =12509.106553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.719 5.719 11 C 0.691 3.309 12 O -0.581 6.581 13 N -0.681 5.681 14 C 0.193 3.807 15 C -0.137 4.137 16 C 0.088 3.912 17 F -0.139 7.139 18 C -0.148 4.148 19 C -0.161 4.161 20 C 0.079 3.921 21 O -0.305 6.305 22 C 0.064 3.936 23 C 0.078 3.922 24 H 0.081 0.919 25 C -0.149 4.149 26 C -0.156 4.156 27 C 0.042 3.958 28 O -0.361 6.361 29 H 0.267 0.733 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.390 0.610 33 H 0.410 0.590 34 H 0.171 0.829 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.022 -24.313 -4.118 29.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.370 5.370 11 C 0.391 3.609 12 O -0.460 6.460 13 N -0.328 5.328 14 C 0.094 3.906 15 C -0.159 4.159 16 C 0.068 3.932 17 F -0.118 7.118 18 C -0.168 4.168 19 C -0.180 4.180 20 C 0.031 3.969 21 O -0.219 6.219 22 C -0.012 4.012 23 C 0.020 3.980 24 H 0.099 0.901 25 C -0.187 4.187 26 C -0.194 4.194 27 C -0.034 4.034 28 O -0.280 6.280 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.222 0.778 33 H 0.246 0.754 34 H 0.188 0.812 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.617 -23.879 -4.158 28.305 hybrid contribution 1.312 0.630 -0.014 1.456 sum 15.929 -23.249 -4.171 28.490 Atomic orbital electron populations 1.69968 1.06093 1.27463 1.48677 1.24940 0.94926 0.99412 0.94684 0.86451 0.79389 0.82239 0.78683 1.20060 1.21066 1.20064 1.21171 0.93281 0.90324 1.53484 0.91895 1.19072 0.87703 0.80821 0.97916 1.45787 1.11254 1.04052 1.75885 1.16148 0.85018 0.81083 0.78651 1.90848 1.13933 1.83561 1.57615 1.42681 1.10564 1.03034 1.76537 1.16537 0.93711 0.82394 0.97937 1.21382 0.96840 0.96870 1.00791 1.17360 0.83150 0.93294 0.99422 1.91486 1.43712 1.94867 1.81745 1.20760 0.95190 0.98760 1.02079 1.20721 0.97895 0.94735 1.04695 1.18571 0.87632 0.92666 0.98039 1.86073 1.29383 1.34159 1.72313 1.23020 0.92140 0.88093 0.97926 1.22761 0.93824 0.92753 0.88694 0.90123 1.22925 1.00642 0.98443 0.96643 1.23153 1.02951 0.97518 0.95737 1.23605 0.90913 0.94223 0.94674 1.89050 1.45478 1.68099 1.25343 0.92347 0.95384 0.95414 0.77769 0.75404 0.81233 0.84796 0.84639 0.90748 0.91184 0.89839 0.90032 0.89951 0.90291 0.91918 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.09 5.43 -5.19 -0.03 7.07 16 10 N -0.72 -15.48 5.55 -66.42 -0.37 -15.85 16 11 C 0.69 14.55 8.37 -86.93 -0.73 13.82 16 12 O -0.58 -14.31 13.51 5.28 0.07 -14.23 16 13 N -0.68 -11.39 5.30 -14.12 -0.07 -11.47 16 14 C 0.19 3.10 6.45 -83.49 -0.54 2.56 16 15 C -0.14 -2.34 8.70 -39.35 -0.34 -2.68 16 16 C 0.09 1.31 7.29 -39.44 -0.29 1.02 16 17 F -0.14 -2.16 17.26 2.25 0.04 -2.12 16 18 C -0.15 -1.74 10.02 -39.49 -0.40 -2.13 16 19 C -0.16 -1.76 9.03 -39.47 -0.36 -2.11 16 20 C 0.08 1.04 6.70 -39.10 -0.26 0.78 16 21 O -0.31 -3.73 9.54 -21.47 -0.20 -3.93 16 22 C 0.06 0.53 4.19 37.16 0.16 0.69 16 23 C 0.08 0.62 3.71 -26.16 -0.10 0.52 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 C -0.15 -0.72 6.64 -25.20 -0.17 -0.89 16 26 C -0.16 -0.77 7.15 -24.73 -0.18 -0.94 16 27 C 0.04 0.30 7.72 38.21 0.29 0.60 16 28 O -0.36 -3.90 11.18 -36.86 -0.41 -4.31 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.39 7.18 8.34 -40.82 -0.34 6.84 16 33 H 0.41 5.76 8.35 -40.82 -0.34 5.42 16 34 H 0.17 3.35 5.79 -52.48 -0.30 3.04 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.14 1.02 6.29 -52.49 -0.33 0.69 16 37 H 0.07 0.44 7.66 -51.93 -0.40 0.04 16 38 H 0.07 0.57 7.66 -51.93 -0.40 0.17 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.30 7.70 -51.93 -0.40 -0.10 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -33.95 373.52 -8.80 -42.75 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.85 Total: 8.20 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -3.35 Total: 4.85 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.29 Total: -52.75 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.55 Total: -22.47 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.95 -8.80 -42.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488248255.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.105 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds