Wall clock time and date at job start Tue Mar 31 2020 20:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00246 * 2 1 4 4 H 1.48504 * 109.46922 * 239.99853 * 3 2 1 5 5 H 1.48492 * 109.47446 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47403 * 119.99878 * 3 2 1 7 7 C 1.37882 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99640 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00030 * 0.28248 * 7 2 1 10 10 N 1.46499 * 109.47101 * 179.72175 * 9 7 2 11 11 C 1.34767 * 120.00228 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99811 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00504 * 179.97438 * 11 10 9 14 14 C 1.40162 * 120.00665 * 174.36919 * 13 11 10 15 15 C 1.38710 * 120.06754 * 335.22248 * 14 13 11 16 16 C 1.38394 * 119.95655 * 179.72619 * 15 14 13 17 17 F 1.35103 * 119.94283 * 180.31901 * 16 15 14 18 18 C 1.38464 * 120.11254 * 0.57607 * 16 15 14 19 19 C 1.38254 * 120.14935 * 359.69908 * 18 16 15 20 20 C 1.38527 * 120.03616 * 0.02562 * 19 18 16 21 21 O 1.36032 * 120.05425 * 180.02562 * 20 19 18 22 22 C 1.42901 * 117.00134 * 359.97400 * 21 20 19 23 23 C 1.52999 * 109.47312 * 180.02562 * 22 21 20 24 24 H 1.08994 * 109.86859 * 53.99470 * 23 22 21 25 25 C 1.54097 * 109.87773 * 175.00386 * 23 22 21 26 26 C 1.54811 * 104.18659 * 121.45487 * 25 23 22 27 27 C 1.54991 * 102.09528 * 20.88019 * 26 25 23 28 28 O 1.43745 * 109.87748 * 292.83546 * 23 22 21 29 29 H 0.97002 * 119.99455 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46646 * 299.71769 * 9 7 2 31 31 H 1.08993 * 109.47327 * 59.71818 * 9 7 2 32 32 H 0.97008 * 119.99673 * 359.97438 * 10 9 7 33 33 H 0.97001 * 119.99781 * 354.36626 * 13 11 10 34 34 H 1.08004 * 120.02480 * 0.02562 * 15 14 13 35 35 H 1.07997 * 119.92872 * 179.72246 * 18 16 15 36 36 H 1.07998 * 119.98361 * 180.02562 * 19 18 16 37 37 H 1.08998 * 109.47264 * 300.00544 * 22 21 20 38 38 H 1.09000 * 109.46844 * 59.99925 * 22 21 20 39 39 H 1.09002 * 110.48444 * 240.12753 * 25 23 22 40 40 H 1.08999 * 110.49290 * 2.77593 * 25 23 22 41 41 H 1.09006 * 110.90466 * 139.08014 * 26 25 23 42 42 H 1.09000 * 110.90874 * 262.67693 * 26 25 23 43 43 H 1.08993 * 110.61991 * 81.47528 * 27 26 25 44 44 H 1.08997 * 110.61993 * 204.47789 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 -0.0053 10 7 2.2028 -3.6128 -0.0102 11 6 1.7535 -4.8834 -0.0154 12 8 0.5581 -5.1055 -0.0164 13 7 2.6292 -5.9078 -0.0204 14 6 2.1665 -7.2260 0.0934 15 6 0.9494 -7.4849 0.7063 16 6 0.4921 -8.7868 0.8123 17 9 -0.6963 -9.0380 1.4036 18 6 1.2531 -9.8327 0.3182 19 6 2.4695 -9.5804 -0.2885 20 6 2.9305 -8.2791 -0.4031 21 8 4.1271 -8.0304 -1.0004 22 6 4.8565 -9.1589 -1.4867 23 6 6.1660 -8.6852 -2.1205 24 1 6.7196 -8.0701 -1.4112 25 6 7.0171 -9.9010 -2.5355 26 6 7.2246 -9.7167 -4.0585 27 6 6.9598 -8.2006 -4.2413 28 8 5.8876 -7.9316 -3.3124 29 1 -0.4849 0.8401 0.0004 30 1 0.6242 -2.5608 0.8844 31 1 0.6242 -2.5530 -0.8955 32 1 3.1565 -3.4355 -0.0097 33 1 3.5797 -5.7329 -0.1028 34 1 0.3567 -6.6706 1.0963 35 1 0.8954 -10.8479 0.4065 36 1 3.0606 -10.3982 -0.6734 37 1 5.0768 -9.8332 -0.6591 38 1 4.2598 -9.6829 -2.2333 39 1 7.9753 -9.8911 -2.0160 40 1 6.4817 -10.8286 -2.3328 41 1 8.2450 -9.9708 -4.3456 42 1 6.5043 -10.3083 -4.6236 43 1 7.8464 -7.6221 -3.9819 44 1 6.6455 -7.9862 -5.2627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488248255.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:50 Heat of formation + Delta-G solvation = -153.370496 kcal Electronic energy + Delta-G solvation = -28662.439580 eV Core-core repulsion = 24300.844756 eV Total energy + Delta-G solvation = -4361.594823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.84406 -41.94910 -40.84216 -40.07050 -38.15765 -36.33024 -35.76561 -34.39825 -33.18558 -31.97871 -31.31720 -30.08262 -28.88157 -26.74809 -25.22225 -24.03813 -23.31056 -22.83005 -22.06234 -21.77853 -20.03888 -19.47672 -18.91658 -18.16810 -17.66637 -17.45615 -17.22187 -17.00670 -16.69037 -16.58119 -16.46412 -16.32093 -15.73320 -15.68545 -15.52224 -15.03907 -14.75577 -14.49959 -14.33490 -14.07064 -13.97300 -13.74410 -13.44894 -13.10337 -12.92020 -12.69411 -12.62861 -12.39453 -12.34156 -12.22742 -12.20102 -11.79437 -11.60028 -11.52225 -11.51395 -11.12757 -10.80911 -10.65751 -10.00678 -9.62747 -8.77760 -8.29598 -6.46475 0.09814 0.14329 1.42313 1.47686 1.54113 1.60435 1.98160 2.04739 2.38230 2.60901 2.91894 3.05390 3.16523 3.42184 3.57843 3.68675 3.85366 3.90151 3.98682 4.13398 4.16694 4.18830 4.29070 4.41412 4.45456 4.58603 4.71263 4.83138 4.85356 4.92190 4.98000 5.03462 5.06866 5.10218 5.15020 5.21859 5.22857 5.36229 5.42791 5.58366 5.70718 5.80196 5.97859 6.09210 6.34923 6.63510 7.08031 7.23096 7.51048 8.82553 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008426 B = 0.002962 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3322.356447 B = 9449.965162 C =12509.106553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.558 4.558 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.713 5.713 11 C 0.691 3.309 12 O -0.623 6.623 13 N -0.664 5.664 14 C 0.156 3.844 15 C -0.160 4.160 16 C 0.066 3.934 17 F -0.149 7.149 18 C -0.122 4.122 19 C -0.145 4.145 20 C 0.093 3.907 21 O -0.321 6.321 22 C 0.053 3.947 23 C 0.070 3.930 24 H 0.076 0.924 25 C -0.141 4.141 26 C -0.151 4.151 27 C 0.032 3.968 28 O -0.402 6.402 29 H 0.270 0.730 30 H -0.009 1.009 31 H -0.011 1.011 32 H 0.407 0.593 33 H 0.423 0.577 34 H 0.130 0.870 35 H 0.173 0.827 36 H 0.184 0.816 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.486 -26.884 -4.716 33.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.366 5.366 11 C 0.391 3.609 12 O -0.504 6.504 13 N -0.312 5.312 14 C 0.060 3.940 15 C -0.182 4.182 16 C 0.046 3.954 17 F -0.128 7.128 18 C -0.142 4.142 19 C -0.164 4.164 20 C 0.045 3.955 21 O -0.235 6.235 22 C -0.021 4.021 23 C 0.012 3.988 24 H 0.094 0.906 25 C -0.179 4.179 26 C -0.188 4.188 27 C -0.044 4.044 28 O -0.321 6.321 29 H 0.078 0.922 30 H 0.009 0.991 31 H 0.007 0.993 32 H 0.242 0.758 33 H 0.262 0.738 34 H 0.148 0.852 35 H 0.190 0.810 36 H 0.201 0.799 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.160 -26.521 -4.759 32.493 hybrid contribution 0.276 1.257 0.126 1.293 sum 18.436 -25.264 -4.633 31.617 Atomic orbital electron populations 1.70138 1.08275 1.28717 1.49715 1.26071 0.95799 1.03880 0.93762 0.85174 0.77884 0.76445 0.79507 1.18675 1.21007 1.18588 1.21557 0.94351 0.90361 1.53281 0.89771 1.18495 0.87989 0.82956 0.94338 1.45356 1.11324 1.03426 1.76521 1.16242 0.84938 0.81545 0.78126 1.90832 1.16093 1.84255 1.59196 1.42296 1.10426 1.02635 1.75819 1.16724 0.94590 0.82425 1.00311 1.21135 0.97509 0.97113 1.02476 1.17575 0.83585 0.93395 1.00874 1.91456 1.44395 1.94813 1.82113 1.21185 0.94386 0.99369 0.99244 1.21232 0.97538 0.94763 1.02875 1.18592 0.87657 0.92577 0.96700 1.86080 1.28867 1.36639 1.71945 1.23440 0.91925 0.87492 0.99272 1.22960 0.94075 0.93902 0.87848 0.90648 1.22940 1.00960 0.97604 0.96353 1.23146 1.04064 0.95561 0.96037 1.23790 0.90307 0.96191 0.94122 1.89005 1.47056 1.69280 1.26808 0.92164 0.99124 0.99340 0.75757 0.73841 0.85246 0.80968 0.79909 0.87320 0.90411 0.88325 0.88196 0.88135 0.90220 0.91505 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 2 C 0.00 0.26 5.46 84.66 0.46 0.73 16 3 Si 0.99 42.94 29.54 68.60 2.03 44.97 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.56 -31.01 9.28 25.60 0.24 -30.77 16 8 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.29 16.20 5.43 85.63 0.46 16.66 16 10 N -0.71 -32.29 5.55 -482.31 -2.68 -34.97 16 11 C 0.69 30.98 8.37 179.06 1.50 32.48 16 12 O -0.62 -33.28 13.51 -4.01 -0.05 -33.34 16 13 N -0.66 -23.03 5.30 -316.83 -1.68 -24.71 16 14 C 0.16 5.13 6.45 38.17 0.25 5.37 16 15 C -0.16 -5.79 8.70 22.42 0.19 -5.60 16 16 C 0.07 1.95 7.29 22.36 0.16 2.11 16 17 F -0.15 -4.71 17.26 44.97 0.78 -3.94 16 18 C -0.12 -2.47 10.02 22.33 0.22 -2.24 16 19 C -0.15 -2.56 9.03 22.34 0.20 -2.36 16 20 C 0.09 2.28 6.70 22.58 0.15 2.43 16 21 O -0.32 -7.11 9.54 -92.36 -0.88 -7.99 16 22 C 0.05 0.69 4.19 71.98 0.30 0.99 16 23 C 0.07 0.93 3.71 30.96 0.11 1.04 16 24 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 25 C -0.14 -0.83 6.64 31.58 0.21 -0.62 16 26 C -0.15 -1.04 7.15 31.89 0.23 -0.82 16 27 C 0.03 0.41 7.72 72.66 0.56 0.97 16 28 O -0.40 -8.22 11.18 -147.43 -1.65 -9.86 16 29 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 30 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H 0.41 15.30 8.34 -92.70 -0.77 14.52 16 33 H 0.42 12.03 8.35 -92.71 -0.77 11.26 16 34 H 0.13 5.70 5.79 -2.91 -0.02 5.69 16 35 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.18 1.53 6.29 -2.91 -0.02 1.51 16 37 H 0.11 0.68 7.66 -2.39 -0.02 0.66 16 38 H 0.08 0.92 7.66 -2.39 -0.02 0.90 16 39 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.10 0.25 7.70 -2.39 -0.02 0.23 16 41 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 42 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -80.35 373.52 0.92 -79.43 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: -0.49 Total: 26.76 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 5.26 Total: 20.38 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -4.07 Total: -116.42 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -2.58 Total: -51.19 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.78 Total: -3.94 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -80.35 0.92 -79.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488248255.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.943 kcal (2) G-P(sol) polarization free energy of solvation -80.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds