Wall clock time and date at job start Tue Mar 31 2020 20:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00338 * 2 1 4 4 H 1.48502 * 109.46932 * 270.00425 * 3 2 1 5 5 H 1.48508 * 109.46867 * 29.99861 * 3 2 1 6 6 H 1.48496 * 109.47329 * 150.00091 * 3 2 1 7 7 C 1.37883 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99455 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00421 * 0.27124 * 7 2 1 10 10 N 1.46500 * 109.47492 * 179.72454 * 9 7 2 11 11 C 1.34775 * 120.00563 * 180.02562 * 10 9 7 12 12 O 1.21595 * 119.99430 * 0.02562 * 11 10 9 13 13 N 1.34767 * 120.00439 * 179.97438 * 11 10 9 14 14 C 1.40158 * 120.00072 * 175.54063 * 13 11 10 15 15 C 1.38709 * 120.07601 * 34.65270 * 14 13 11 16 16 C 1.38392 * 119.96336 * 179.97438 * 15 14 13 17 17 F 1.35095 * 119.94462 * 179.97438 * 16 15 14 18 18 C 1.38464 * 120.10914 * 0.02562 * 16 15 14 19 19 C 1.38257 * 120.15357 * 359.95425 * 18 16 15 20 20 C 1.38523 * 120.03667 * 359.79239 * 19 18 16 21 21 O 1.36030 * 120.05768 * 180.22991 * 20 19 18 22 22 C 1.42897 * 116.99761 * 0.25767 * 21 20 19 23 23 C 1.53003 * 109.47116 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.82426 * 305.56999 * 23 22 21 25 25 C 1.54380 * 109.83157 * 184.58360 * 23 22 21 26 26 C 1.55308 * 102.25215 * 219.12848 * 25 23 22 27 27 C 1.54939 * 100.94073 * 34.13469 * 26 25 23 28 28 O 1.43243 * 109.82829 * 66.44674 * 23 22 21 29 29 H 0.96997 * 120.00433 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47158 * 299.72809 * 9 7 2 31 31 H 1.09007 * 109.47018 * 59.72673 * 9 7 2 32 32 H 0.97003 * 119.99699 * 0.02562 * 10 9 7 33 33 H 0.97003 * 119.99944 * 355.55168 * 13 11 10 34 34 H 1.08004 * 120.01468 * 359.97438 * 15 14 13 35 35 H 1.07996 * 119.92267 * 179.97438 * 18 16 15 36 36 H 1.08000 * 119.98603 * 180.02562 * 19 18 16 37 37 H 1.09003 * 109.47007 * 299.99478 * 22 21 20 38 38 H 1.08996 * 109.47872 * 59.99556 * 22 21 20 39 39 H 1.08999 * 110.84616 * 337.31908 * 25 23 22 40 40 H 1.09003 * 110.84582 * 100.93894 * 25 23 22 41 41 H 1.08999 * 111.12325 * 276.21516 * 26 25 23 42 42 H 1.08994 * 111.12484 * 152.05478 * 26 25 23 43 43 H 1.09008 * 110.31148 * 204.63739 * 27 26 25 44 44 H 1.08998 * 110.39593 * 82.51238 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0073 10 7 2.2029 -3.6127 -0.0132 11 6 1.7537 -4.8834 -0.0203 12 8 0.5582 -5.1055 -0.0223 13 7 2.6294 -5.9078 -0.0262 14 6 2.1650 -7.2273 0.0608 15 6 0.9645 -7.5825 -0.5363 16 6 0.5084 -8.8862 -0.4494 17 9 -0.6612 -9.2316 -1.0307 18 6 1.2483 -9.8369 0.2331 19 6 2.4458 -9.4881 0.8297 20 6 2.9107 -8.1862 0.7421 21 8 4.0912 -7.8436 1.3249 22 6 4.8025 -8.8786 2.0066 23 6 6.0957 -8.3082 2.5924 24 1 6.6742 -7.8216 1.8070 25 6 6.9261 -9.4420 3.2313 26 6 7.4895 -8.7591 4.5073 27 6 6.3162 -7.8181 4.8797 28 8 5.7867 -7.3637 3.6240 29 1 -0.4850 0.8400 0.0004 30 1 0.6243 -2.5616 0.8824 31 1 0.6243 -2.5523 -0.8976 32 1 3.1566 -3.4355 -0.0119 33 1 3.5812 -5.7318 -0.0905 34 1 0.3860 -6.8419 -1.0687 35 1 0.8893 -10.8533 0.2994 36 1 3.0209 -10.2319 1.3610 37 1 4.1833 -9.2760 2.8109 38 1 5.0431 -9.6772 1.3050 39 1 6.2908 -10.2882 3.4925 40 1 7.7339 -9.7520 2.5684 41 1 8.3924 -8.1913 4.2829 42 1 7.6727 -9.4894 5.2954 43 1 6.6798 -6.9734 5.4649 44 1 5.5541 -8.3633 5.4365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488248256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:55 Heat of formation + Delta-G solvation = -130.310988 kcal Electronic energy + Delta-G solvation = -28721.369136 eV Core-core repulsion = 24360.774248 eV Total energy + Delta-G solvation = -4360.594888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.69077 -40.72130 -39.88783 -38.97338 -37.09458 -34.58095 -34.04858 -32.65715 -32.34588 -31.35723 -30.10396 -28.91814 -26.96778 -26.22932 -23.61744 -22.71678 -22.19321 -21.88377 -21.33645 -20.25371 -18.54714 -18.14844 -17.78222 -17.44852 -16.71769 -16.25827 -16.00512 -15.73671 -15.71005 -15.30161 -15.02168 -14.80827 -14.64478 -14.50423 -13.96634 -13.95078 -13.69781 -13.28608 -13.13615 -13.03060 -12.45646 -12.32955 -12.19361 -11.97174 -11.90816 -11.81654 -11.66861 -11.39789 -11.27752 -10.95494 -10.94744 -10.87206 -10.28843 -10.15984 -9.86732 -9.43017 -9.37165 -8.73785 -8.55253 -7.99163 -7.60453 -6.14323 -4.21021 1.17807 1.22438 2.83108 3.12373 3.26555 3.32864 3.35923 3.45137 3.47630 3.91701 3.96613 4.24629 4.32696 4.37947 4.42042 4.61549 4.65695 4.74711 4.77292 4.83476 4.93801 4.99644 5.08258 5.17670 5.21962 5.24716 5.29319 5.39009 5.46138 5.50156 5.66470 5.75429 5.95722 6.07143 6.22764 6.63350 6.65420 6.85940 7.03575 7.31293 7.43755 7.52457 7.55479 7.84860 8.01428 8.71631 8.86080 9.21398 9.45830 10.95927 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008020 B = 0.003099 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3490.370508 B = 9033.384018 C =12217.354147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.719 5.719 11 C 0.692 3.308 12 O -0.584 6.584 13 N -0.684 5.684 14 C 0.186 3.814 15 C -0.124 4.124 16 C 0.083 3.917 17 F -0.140 7.140 18 C -0.142 4.142 19 C -0.166 4.166 20 C 0.086 3.914 21 O -0.301 6.301 22 C 0.051 3.949 23 C 0.082 3.918 24 H 0.093 0.907 25 C -0.148 4.148 26 C -0.155 4.155 27 C 0.045 3.955 28 O -0.364 6.364 29 H 0.266 0.734 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.390 0.610 33 H 0.409 0.591 34 H 0.164 0.836 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.683 -24.037 5.872 29.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.145 3.855 10 N -0.371 5.371 11 C 0.392 3.608 12 O -0.462 6.462 13 N -0.333 5.333 14 C 0.089 3.911 15 C -0.146 4.146 16 C 0.063 3.937 17 F -0.118 7.118 18 C -0.162 4.162 19 C -0.185 4.185 20 C 0.038 3.962 21 O -0.215 6.215 22 C -0.025 4.025 23 C 0.024 3.976 24 H 0.110 0.890 25 C -0.185 4.185 26 C -0.193 4.193 27 C -0.032 4.032 28 O -0.283 6.283 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.222 0.778 33 H 0.245 0.755 34 H 0.181 0.819 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.344 -23.564 5.842 28.199 hybrid contribution 1.162 0.551 0.054 1.287 sum 15.506 -23.014 5.897 28.370 Atomic orbital electron populations 1.69974 1.06095 1.27327 1.48845 1.24941 0.94918 0.99417 0.94721 0.86397 0.79622 0.82589 0.78189 1.20477 1.21013 1.19727 1.21211 0.93323 0.90322 1.53255 0.91845 1.19062 0.87709 0.80858 0.97861 1.45758 1.11213 1.04025 1.76061 1.16141 0.85035 0.81075 0.78551 1.90874 1.13904 1.83637 1.57803 1.42616 1.10337 1.02780 1.77524 1.16484 0.94151 0.83116 0.97391 1.21257 0.96932 0.95388 1.00974 1.17355 0.83977 0.93249 0.99147 1.91484 1.45292 1.92584 1.82474 1.20778 0.95467 0.99582 1.00326 1.20742 0.98208 0.94726 1.04848 1.18728 0.88098 0.93155 0.96198 1.86111 1.31039 1.37194 1.67127 1.23265 0.93228 0.90059 0.95919 1.22780 0.93192 0.90140 0.91474 0.88955 1.23104 0.99882 0.97989 0.97561 1.23277 0.99233 0.99220 0.97575 1.23450 0.94379 0.98161 0.87160 1.88617 1.78346 1.44771 1.16557 0.92426 0.95462 0.95451 0.77784 0.75541 0.81858 0.84756 0.84646 0.91530 0.91006 0.90083 0.89324 0.90026 0.89660 0.89402 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.27 7.16 5.43 -5.20 -0.03 7.13 16 10 N -0.72 -15.66 5.55 -66.42 -0.37 -16.03 16 11 C 0.69 14.70 8.41 -86.93 -0.73 13.97 16 12 O -0.58 -14.51 13.76 5.28 0.07 -14.44 16 13 N -0.68 -11.46 5.20 -14.11 -0.07 -11.53 16 14 C 0.19 2.99 6.32 -83.49 -0.53 2.46 16 15 C -0.12 -2.08 8.68 -39.35 -0.34 -2.43 16 16 C 0.08 1.22 7.29 -39.44 -0.29 0.93 16 17 F -0.14 -2.13 17.26 2.25 0.04 -2.09 16 18 C -0.14 -1.65 10.02 -39.49 -0.40 -2.04 16 19 C -0.17 -1.81 9.03 -39.47 -0.36 -2.17 16 20 C 0.09 1.15 6.70 -39.09 -0.26 0.88 16 21 O -0.30 -3.73 9.68 -22.41 -0.22 -3.95 16 22 C 0.05 0.43 4.27 37.16 0.16 0.59 16 23 C 0.08 0.66 3.81 -26.01 -0.10 0.56 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 25 C -0.15 -0.70 6.54 -24.78 -0.16 -0.86 16 26 C -0.16 -0.76 7.16 -24.48 -0.18 -0.93 16 27 C 0.05 0.34 7.78 38.18 0.30 0.63 16 28 O -0.36 -4.04 11.00 -37.80 -0.42 -4.46 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.39 7.28 8.34 -40.82 -0.34 6.94 16 33 H 0.41 5.71 8.57 -40.82 -0.35 5.36 16 34 H 0.16 3.14 6.19 -52.48 -0.32 2.82 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.14 1.03 6.29 -52.49 -0.33 0.70 16 37 H 0.07 0.54 7.65 -51.93 -0.40 0.14 16 38 H 0.07 0.43 7.67 -51.93 -0.40 0.03 16 39 H 0.08 0.31 7.85 -51.93 -0.41 -0.10 16 40 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -34.39 374.45 -8.82 -43.21 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.89 Total: 7.99 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -3.33 Total: 5.22 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.29 Total: -53.13 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.56 Total: -22.84 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.39 -8.82 -43.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488248256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.105 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds