Wall clock time and date at job start Tue Mar 31 2020 20:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46646 * 239.99773 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47259 * 119.99535 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46491 * 109.46957 * 179.72354 * 12 10 9 14 14 C 1.34780 * 120.00091 * 179.97438 * 13 12 10 15 15 O 1.21592 * 119.99882 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00308 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00126 * 180.02562 * 16 14 13 18 18 H 1.08997 * 110.27485 * 32.91172 * 17 16 14 19 19 C 1.54595 * 110.30800 * 270.71175 * 17 16 14 20 20 C 1.54939 * 102.92429 * 219.12485 * 19 17 16 21 21 N 1.48538 * 103.22510 * 37.41606 * 20 19 17 22 22 C 1.46898 * 111.00166 * 200.28024 * 21 20 19 23 23 C 1.53006 * 109.46871 * 287.39852 * 22 21 20 24 24 F 1.39895 * 109.47177 * 59.99596 * 23 22 21 25 25 F 1.39894 * 109.46739 * 180.02562 * 23 22 21 26 26 F 1.39905 * 109.47007 * 299.99670 * 23 22 21 27 27 C 1.47906 * 105.82162 * 320.79348 * 21 20 19 28 28 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 31 31 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 32 32 H 0.97003 * 120.00560 * 359.97438 * 13 12 10 33 33 H 0.97005 * 119.99763 * 359.97438 * 16 14 13 34 34 H 1.09004 * 110.72494 * 337.48954 * 19 17 16 35 35 H 1.08999 * 110.72326 * 100.76663 * 19 17 16 36 36 H 1.08997 * 110.66434 * 278.98314 * 20 19 17 37 37 H 1.09002 * 110.81010 * 155.91841 * 20 19 17 38 38 H 1.08998 * 109.47112 * 47.38998 * 22 21 20 39 39 H 1.08991 * 109.47491 * 167.39741 * 22 21 20 40 40 H 1.08999 * 109.91576 * 265.98156 * 27 21 20 41 41 H 1.09000 * 109.91968 * 144.68150 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1958 -5.9764 -0.0088 14 6 1.7467 -7.2471 -0.0142 15 8 0.5512 -7.4693 -0.0152 16 7 2.6224 -8.2715 -0.0186 17 6 2.1342 -9.6527 -0.0250 18 1 1.1992 -9.7202 -0.5811 19 6 1.9378 -10.1591 1.4224 20 6 2.4309 -11.6259 1.3462 21 7 3.5860 -11.5483 0.4157 22 6 3.8900 -12.8662 -0.1574 23 6 4.5294 -13.7527 0.9133 24 9 3.6424 -13.9033 1.9847 25 9 4.8194 -15.0077 0.3674 26 9 5.7115 -13.1575 1.3667 27 6 3.1903 -10.5901 -0.6393 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6165 -4.9246 0.8846 31 1 0.6178 -4.9168 -0.8953 32 1 3.1496 -5.7992 -0.0077 33 1 3.5762 -8.0941 -0.0182 34 1 2.5473 -9.5829 2.1187 35 1 0.8860 -10.1200 1.7054 36 1 1.6529 -12.2726 0.9405 37 1 2.7500 -11.9787 2.3270 38 1 2.9690 -13.3301 -0.5105 39 1 4.5810 -12.7490 -0.9921 40 1 2.7629 -11.1263 -1.4866 41 1 4.0572 -10.0128 -0.9608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553658214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:28 Heat of formation + Delta-G solvation = -209.730085 kcal Electronic energy + Delta-G solvation = -28663.162620 eV Core-core repulsion = 23777.187083 eV Total energy + Delta-G solvation = -4885.975537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.45356 -48.02488 -47.87610 -40.32933 -39.12188 -38.11850 -34.90596 -34.38494 -33.66852 -32.00563 -31.36473 -29.30573 -28.28390 -26.89884 -24.45067 -23.62206 -21.83561 -21.50837 -20.67527 -19.60541 -18.94313 -18.84117 -18.58095 -18.05016 -17.76743 -16.74506 -16.08361 -15.55998 -15.45102 -15.24014 -15.04649 -14.80678 -14.64464 -14.60401 -14.38741 -14.33419 -14.09957 -14.07239 -14.00295 -13.90883 -13.55876 -13.26364 -12.88849 -12.48317 -12.32898 -12.18933 -11.97694 -11.78720 -11.71918 -11.63198 -11.16731 -11.10506 -10.51184 -10.32261 -10.08381 -9.63090 -9.29374 -9.16919 -8.65418 -8.63382 -8.10497 -6.51723 -3.93892 2.25255 2.72548 3.04885 3.13402 3.21338 3.25265 3.32848 3.38241 3.59349 3.74484 3.93486 4.07094 4.11009 4.33755 4.40431 4.53919 4.68616 4.74796 4.81391 4.88837 4.95045 5.16724 5.17833 5.35582 5.48292 5.62147 5.83056 5.89836 5.99058 6.07208 6.08474 6.16089 6.47090 6.72367 7.04803 7.45439 7.91732 8.19259 8.44668 8.74779 9.04166 9.38958 9.86854 10.65042 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.035711 B = 0.001652 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.874346 B =16940.498562 C =17329.990894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.723 5.723 14 C 0.706 3.294 15 O -0.598 6.598 16 N -0.741 5.741 17 C 0.158 3.842 18 H 0.100 0.900 19 C -0.135 4.135 20 C 0.024 3.976 21 N -0.511 5.511 22 C -0.001 4.001 23 C 0.459 3.541 24 F -0.183 7.183 25 F -0.185 7.185 26 F -0.173 7.173 27 C 0.032 3.968 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.407 0.593 33 H 0.399 0.601 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.064 0.936 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 -27.175 -0.569 27.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.380 5.380 14 C 0.405 3.595 15 O -0.477 6.477 16 N -0.397 5.397 17 C 0.052 3.948 18 H 0.118 0.882 19 C -0.174 4.174 20 C -0.103 4.103 21 N -0.236 5.236 22 C -0.131 4.131 23 C 0.405 3.595 24 F -0.164 7.164 25 F -0.167 7.167 26 F -0.154 7.154 27 C -0.096 4.096 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.245 0.755 33 H 0.234 0.766 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.139 0.861 40 H 0.082 0.918 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.040 -26.996 -0.295 27.464 hybrid contribution 0.086 0.536 -0.249 0.597 sum 5.126 -26.461 -0.544 26.958 Atomic orbital electron populations 1.69605 1.05996 1.28633 1.49235 1.25325 0.95673 0.99931 0.96783 0.85868 0.78769 0.80150 0.79143 1.19796 1.20861 1.19779 1.19678 0.93432 0.82016 1.48385 0.87736 1.41783 1.09489 1.04447 1.62636 1.19764 0.88298 0.85017 0.85560 1.90492 1.13752 1.86858 1.57383 1.20782 0.91198 0.84860 1.03125 1.44776 1.11299 1.03316 1.78646 1.15851 0.85201 0.80596 0.77819 1.90904 1.14043 1.84257 1.58498 1.45111 1.09133 1.04397 1.81053 1.21531 0.97117 0.79887 0.96309 0.88186 1.23000 1.02562 0.94464 0.97384 1.23598 0.90916 0.97715 0.98079 1.64702 1.38301 1.05402 1.15162 1.23421 1.03065 0.91290 0.95328 1.20387 0.77297 0.79159 0.82705 1.93169 1.68377 1.95802 1.59078 1.93192 1.93812 1.44046 1.85622 1.93220 1.48658 1.83362 1.90175 1.23164 0.99162 0.94190 0.93035 0.91535 0.77014 0.90020 0.90023 0.75538 0.76597 0.89782 0.89817 0.92678 0.88611 0.89704 0.86105 0.91788 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.73 13.05 55.50 0.72 -23.01 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.42 29.55 -169.99 -5.02 15.39 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.31 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.55 -13.48 5.29 -10.96 -0.06 -13.54 16 10 C 0.43 9.69 7.85 -10.98 -0.09 9.60 16 11 O -0.60 -15.10 15.24 5.55 0.08 -15.02 16 12 C 0.13 2.34 6.15 -5.20 -0.03 2.31 16 13 N -0.72 -11.68 5.53 -66.42 -0.37 -12.05 16 14 C 0.71 10.73 8.57 -86.92 -0.74 9.98 16 15 O -0.60 -11.02 15.99 5.28 0.08 -10.93 16 16 N -0.74 -7.97 5.06 -57.34 -0.29 -8.26 16 17 C 0.16 1.42 3.34 -66.57 -0.22 1.20 16 18 H 0.10 1.03 7.56 -51.93 -0.39 0.63 16 19 C -0.13 -1.17 6.78 -24.87 -0.17 -1.34 16 20 C 0.02 0.17 5.41 -1.89 -0.01 0.16 16 21 N -0.51 -3.45 5.17 -230.44 -1.19 -4.64 16 22 C 0.00 0.00 4.83 -3.82 -0.02 -0.02 16 23 C 0.46 3.25 3.28 37.16 0.12 3.37 16 24 F -0.18 -1.46 14.67 2.25 0.03 -1.43 16 25 F -0.19 -1.37 17.32 2.25 0.04 -1.33 16 26 F -0.17 -1.55 17.24 2.25 0.04 -1.51 16 27 C 0.03 0.20 6.43 -2.75 -0.02 0.19 16 28 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.40 9.36 7.90 -40.82 -0.32 9.04 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.41 6.41 7.45 -40.82 -0.30 6.10 16 33 H 0.40 3.52 8.37 -40.82 -0.34 3.18 16 34 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.33 7.81 -51.93 -0.41 -0.07 16 37 H 0.10 0.72 6.73 -51.93 -0.35 0.37 16 38 H 0.08 0.30 7.83 -51.93 -0.41 -0.10 16 39 H 0.12 0.42 8.08 -51.93 -0.42 0.00 16 40 H 0.06 0.31 7.77 -51.93 -0.40 -0.09 16 41 H 0.10 0.57 7.65 -51.93 -0.40 0.17 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -31.97 358.34 -6.88 -38.86 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -4.94 Total: 14.43 kcal Atomic # 6 Polarization: 19.05 SS G_CDS: -1.42 Total: 17.63 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -1.18 Total: -61.50 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: 0.17 Total: -25.95 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.11 Total: -4.26 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.97 -6.88 -38.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553658214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.871 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds