Wall clock time and date at job start Tue Mar 31 2020 20:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46646 * 239.99773 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47259 * 119.99535 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46491 * 109.46957 * 179.72354 * 12 10 9 14 14 C 1.34780 * 120.00091 * 179.97438 * 13 12 10 15 15 O 1.21592 * 119.99882 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00308 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00126 * 180.02562 * 16 14 13 18 18 H 1.08997 * 110.27485 * 32.91172 * 17 16 14 19 19 C 1.54595 * 110.30800 * 270.71175 * 17 16 14 20 20 C 1.54939 * 102.92429 * 219.12485 * 19 17 16 21 21 N 1.48538 * 103.22510 * 37.41606 * 20 19 17 22 22 C 1.46898 * 111.00166 * 200.28024 * 21 20 19 23 23 C 1.53006 * 109.46871 * 287.39852 * 22 21 20 24 24 F 1.39895 * 109.47177 * 59.99596 * 23 22 21 25 25 F 1.39894 * 109.46739 * 180.02562 * 23 22 21 26 26 F 1.39905 * 109.47007 * 299.99670 * 23 22 21 27 27 C 1.47906 * 105.82162 * 320.79348 * 21 20 19 28 28 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 31 31 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 32 32 H 0.97003 * 120.00560 * 359.97438 * 13 12 10 33 33 H 0.97005 * 119.99763 * 359.97438 * 16 14 13 34 34 H 1.09004 * 110.72494 * 337.48954 * 19 17 16 35 35 H 1.08999 * 110.72326 * 100.76663 * 19 17 16 36 36 H 1.08997 * 110.66434 * 278.98314 * 20 19 17 37 37 H 1.09002 * 110.81010 * 155.91841 * 20 19 17 38 38 H 1.08998 * 109.47112 * 47.38998 * 22 21 20 39 39 H 1.08991 * 109.47491 * 167.39741 * 22 21 20 40 40 H 1.08999 * 109.91576 * 265.98156 * 27 21 20 41 41 H 1.09000 * 109.91968 * 144.68150 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1958 -5.9764 -0.0088 14 6 1.7467 -7.2471 -0.0142 15 8 0.5512 -7.4693 -0.0152 16 7 2.6224 -8.2715 -0.0186 17 6 2.1342 -9.6527 -0.0250 18 1 1.1992 -9.7202 -0.5811 19 6 1.9378 -10.1591 1.4224 20 6 2.4309 -11.6259 1.3462 21 7 3.5860 -11.5483 0.4157 22 6 3.8900 -12.8662 -0.1574 23 6 4.5294 -13.7527 0.9133 24 9 3.6424 -13.9033 1.9847 25 9 4.8194 -15.0077 0.3674 26 9 5.7115 -13.1575 1.3667 27 6 3.1903 -10.5901 -0.6393 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6165 -4.9246 0.8846 31 1 0.6178 -4.9168 -0.8953 32 1 3.1496 -5.7992 -0.0077 33 1 3.5762 -8.0941 -0.0182 34 1 2.5473 -9.5829 2.1187 35 1 0.8860 -10.1200 1.7054 36 1 1.6529 -12.2726 0.9405 37 1 2.7500 -11.9787 2.3270 38 1 2.9690 -13.3301 -0.5105 39 1 4.5810 -12.7490 -0.9921 40 1 2.7629 -11.1263 -1.4866 41 1 4.0572 -10.0128 -0.9608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000553658214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:27 Heat of formation + Delta-G solvation = -235.518509 kcal Electronic energy + Delta-G solvation = -28664.280890 eV Core-core repulsion = 23777.187083 eV Total energy + Delta-G solvation = -4887.093807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.135 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.02093 -48.58664 -48.47888 -41.37468 -40.28938 -39.57239 -36.25197 -35.69308 -35.23621 -33.36847 -32.70442 -29.97594 -29.32667 -28.03252 -26.25335 -24.15524 -22.55913 -22.28663 -21.65822 -21.32285 -20.12575 -19.64508 -19.50366 -19.38064 -18.43523 -17.69758 -17.38335 -16.84933 -16.60092 -16.56659 -16.16843 -15.70968 -15.62581 -15.53366 -15.40147 -15.23629 -15.08293 -14.97370 -14.87472 -14.68664 -14.63407 -13.95310 -13.84685 -13.77243 -13.52537 -13.43041 -13.06030 -12.90570 -12.82362 -12.45603 -12.41035 -12.32768 -12.12933 -11.86892 -11.54798 -11.38047 -10.53825 -10.39357 -10.08843 -9.83706 -9.66285 -8.49500 -5.99727 1.39297 1.43396 1.53143 1.60382 1.79254 1.91813 2.13703 2.29782 2.53719 2.89873 3.06650 3.11726 3.17754 3.32370 3.39426 3.56686 3.73552 4.09215 4.21648 4.22283 4.24156 4.27797 4.37440 4.45648 4.48766 4.62506 4.76315 4.86351 4.97917 5.11963 5.33584 5.40113 5.51396 5.61612 5.66050 5.93050 5.98906 6.49751 7.04932 7.05228 7.44678 7.56229 7.96335 8.67081 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.035711 B = 0.001652 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.874346 B =16940.498562 C =17329.990894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.143 3.857 13 N -0.725 5.725 14 C 0.706 3.294 15 O -0.630 6.630 16 N -0.723 5.723 17 C 0.154 3.846 18 H 0.089 0.911 19 C -0.134 4.134 20 C 0.031 3.969 21 N -0.523 5.523 22 C 0.003 3.997 23 C 0.455 3.545 24 F -0.191 7.191 25 F -0.188 7.188 26 F -0.187 7.187 27 C 0.042 3.958 28 H 0.280 0.720 29 H 0.399 0.601 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.410 0.590 33 H 0.411 0.589 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.141 0.859 40 H 0.087 0.913 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.454 -28.037 -1.318 28.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.512 6.512 12 C 0.014 3.986 13 N -0.382 5.382 14 C 0.406 3.594 15 O -0.512 6.512 16 N -0.379 5.379 17 C 0.048 3.952 18 H 0.107 0.893 19 C -0.173 4.173 20 C -0.096 4.096 21 N -0.248 5.248 22 C -0.127 4.127 23 C 0.401 3.599 24 F -0.172 7.172 25 F -0.169 7.169 26 F -0.168 7.168 27 C -0.086 4.086 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.248 0.752 33 H 0.248 0.752 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.159 0.841 40 H 0.105 0.895 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.508 -27.906 -1.044 28.463 hybrid contribution -0.032 0.689 0.011 0.690 sum 5.476 -27.216 -1.033 27.781 Atomic orbital electron populations 1.69674 1.06977 1.29666 1.49265 1.26124 0.96544 1.02673 0.95827 0.84929 0.77705 0.76275 0.79077 1.19482 1.19688 1.19544 1.19700 0.92975 0.83564 1.50449 0.89553 1.41834 1.09595 1.04593 1.63490 1.20447 0.88126 0.85936 0.83450 1.90469 1.15188 1.87568 1.58000 1.20564 0.90986 0.83053 1.04000 1.44700 1.10995 1.03333 1.79184 1.15941 0.85187 0.80756 0.77533 1.90883 1.15618 1.84656 1.60047 1.45046 1.09217 1.04250 1.79433 1.21692 0.97778 0.79158 0.96611 0.89280 1.22918 1.01793 0.95702 0.96890 1.23508 0.91430 0.96454 0.98208 1.64652 1.38120 1.06521 1.15535 1.23518 1.04328 0.90049 0.94766 1.20751 0.76843 0.79362 0.82951 1.93155 1.68512 1.95862 1.59695 1.93185 1.93834 1.44332 1.85562 1.93192 1.49608 1.83580 1.90444 1.23107 0.98590 0.93686 0.93187 0.91093 0.76697 0.89175 0.88996 0.75231 0.75233 0.91080 0.90792 0.91307 0.89276 0.87580 0.84066 0.89521 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.38 13.05 21.66 0.28 -48.10 16 2 C -0.01 -0.57 5.50 84.92 0.47 -0.10 16 3 Si 1.00 41.48 29.55 68.60 2.03 43.50 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.34 -18.45 9.68 84.04 0.81 -17.64 16 8 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 9 N -0.56 -27.83 5.29 -306.98 -1.62 -29.45 16 10 C 0.43 19.70 7.85 87.66 0.69 20.39 16 11 O -0.62 -31.73 15.24 -3.07 -0.05 -31.78 16 12 C 0.14 5.12 6.15 85.64 0.53 5.65 16 13 N -0.72 -22.89 5.53 -482.30 -2.67 -25.55 16 14 C 0.71 20.86 8.57 179.05 1.53 22.39 16 15 O -0.63 -22.87 15.99 -4.01 -0.06 -22.93 16 16 N -0.72 -14.63 5.06 -453.60 -2.30 -16.93 16 17 C 0.15 2.52 3.34 45.87 0.15 2.67 16 18 H 0.09 1.72 7.56 -2.39 -0.02 1.70 16 19 C -0.13 -2.22 6.78 31.80 0.22 -2.01 16 20 C 0.03 0.39 5.41 86.65 0.47 0.86 16 21 N -0.52 -5.83 5.17 -882.98 -4.56 -10.39 16 22 C 0.00 0.02 4.83 86.31 0.42 0.44 16 23 C 0.46 5.69 3.28 71.98 0.24 5.92 16 24 F -0.19 -2.83 14.67 44.97 0.66 -2.17 16 25 F -0.19 -2.47 17.32 44.97 0.78 -1.69 16 26 F -0.19 -3.13 17.24 44.97 0.78 -2.36 16 27 C 0.04 0.41 6.43 86.45 0.56 0.97 16 28 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 29 H 0.40 19.08 7.90 -92.71 -0.73 18.34 16 30 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 31 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 32 H 0.41 12.62 7.45 -92.71 -0.69 11.93 16 33 H 0.41 6.55 8.37 -92.70 -0.78 5.78 16 34 H 0.07 1.37 8.06 -2.38 -0.02 1.35 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 0.68 7.81 -2.39 -0.02 0.66 16 37 H 0.09 1.26 6.73 -2.39 -0.02 1.24 16 38 H 0.11 0.37 7.83 -2.39 -0.02 0.35 16 39 H 0.14 0.48 8.08 -2.39 -0.02 0.46 16 40 H 0.09 0.51 7.77 -2.39 -0.02 0.49 16 41 H 0.10 0.91 7.65 -2.39 -0.02 0.89 16 Total: -1.00 -68.54 358.34 -1.74 -70.27 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -1.07 Total: 38.03 kcal Atomic # 6 Polarization: 33.47 SS G_CDS: 6.08 Total: 39.55 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -10.87 Total: -130.42 kcal Atomic # 8 Polarization: -54.60 SS G_CDS: -0.11 Total: -54.71 kcal Atomic # 9 Polarization: -8.43 SS G_CDS: 2.21 Total: -6.22 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Total: -68.54 -1.74 -70.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553658214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.244 kcal (2) G-P(sol) polarization free energy of solvation -68.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds