Wall clock time and date at job start Tue Mar 31 2020 20:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86793 * 119.99927 * 2 1 4 4 H 1.48505 * 109.46969 * 269.99890 * 3 2 1 5 5 H 1.48496 * 109.47429 * 29.99643 * 3 2 1 6 6 H 1.48503 * 109.47001 * 149.99921 * 3 2 1 7 7 C 1.39934 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00096 * 162.31170 * 7 2 1 9 9 C 1.41434 * 120.00399 * 342.30647 * 7 2 1 10 10 C 1.40787 * 120.18115 * 155.18507 * 9 7 2 11 11 C 1.37706 * 120.04369 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41356 * 359.97438 * 11 10 9 13 13 C 1.39884 * 120.35804 * 0.02562 * 12 11 10 14 14 C 1.47881 * 120.02774 * 180.02562 * 13 12 11 15 15 O 1.21546 * 120.00390 * 179.97438 * 14 13 12 16 16 N 1.34774 * 120.00014 * 359.97438 * 14 13 12 17 17 C 1.46497 * 120.00319 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47653 * 180.02562 * 17 16 14 19 19 C 1.38230 * 119.99959 * 269.72820 * 18 17 16 20 20 C 1.38240 * 120.00313 * 179.76278 * 19 18 17 21 21 C 1.38236 * 119.99246 * 0.48170 * 20 19 18 22 22 C 1.50697 * 119.99801 * 179.76662 * 21 20 19 23 23 C 1.50699 * 109.47302 * 270.02711 * 22 21 20 24 24 N 1.34784 * 120.00018 * 180.02562 * 23 22 21 25 25 O 1.21276 * 120.00428 * 359.97438 * 23 22 21 26 26 C 1.38232 * 120.00435 * 359.79532 * 21 20 19 27 27 C 1.38234 * 119.99932 * 359.95318 * 26 21 20 28 28 C 1.39031 * 119.94814 * 0.02562 * 13 12 11 29 29 H 0.96997 * 120.00049 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.97666 * 0.03467 * 10 9 7 31 31 H 1.07997 * 119.79224 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.82764 * 179.97438 * 12 11 10 33 33 H 0.97003 * 120.00172 * 0.02562 * 16 14 13 34 34 H 1.09001 * 109.47298 * 300.00607 * 17 16 14 35 35 H 1.09010 * 109.47401 * 59.99915 * 17 16 14 36 36 H 1.08002 * 120.00242 * 359.97438 * 19 18 17 37 37 H 1.07989 * 120.00563 * 180.25322 * 20 19 18 38 38 H 1.09001 * 109.47293 * 30.03006 * 22 21 20 39 39 H 1.09005 * 109.47422 * 150.02484 * 22 21 20 40 40 H 0.96996 * 119.99579 * 359.97438 * 24 23 22 41 41 H 0.96996 * 119.99756 * 180.02562 * 24 23 22 42 42 H 1.08000 * 120.00765 * 179.97438 * 26 21 20 43 43 H 1.08007 * 120.00459 * 180.02562 * 27 26 21 44 44 H 1.07998 * 120.20520 * 180.25560 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4397 2.6527 0.6999 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0497 -1.2342 -0.2836 9 6 1.3510 -2.4076 0.3733 10 6 1.8218 -3.6493 -0.0943 11 6 1.1797 -4.8117 0.2700 12 6 0.0706 -4.7699 1.0962 13 6 -0.4118 -3.5456 1.5707 14 6 -1.5974 -3.5095 2.4538 15 8 -2.0159 -2.4454 2.8662 16 7 -2.2140 -4.6564 2.8013 17 6 -3.3889 -4.6206 3.6757 18 6 -3.8842 -6.0245 3.9095 19 6 -4.8263 -6.5754 3.0612 20 6 -5.2771 -7.8650 3.2727 21 6 -4.7929 -8.6001 4.3386 22 6 -5.2881 -10.0041 4.5724 23 6 -6.4967 -9.9673 5.4718 24 7 -7.1127 -11.1144 5.8202 25 8 -6.9146 -8.9056 5.8829 26 6 -3.8550 -8.0473 5.1903 27 6 -3.4004 -6.7596 4.9757 28 6 0.2244 -2.3627 1.2114 29 1 -0.4850 0.8400 -0.0004 30 1 2.6873 -3.6901 -0.7391 31 1 1.5446 -5.7620 -0.0908 32 1 -0.4260 -5.6874 1.3756 33 1 -1.8799 -5.5056 2.4725 34 1 -3.1184 -4.1675 4.6295 35 1 -4.1753 -4.0314 3.2038 36 1 -5.2079 -5.9994 2.2310 37 1 -6.0101 -8.2968 2.6076 38 1 -5.5585 -10.4575 3.6187 39 1 -4.5016 -10.5929 5.0445 40 1 -6.7782 -11.9635 5.4916 41 1 -7.8908 -11.0906 6.3988 42 1 -3.4770 -8.6214 6.0233 43 1 -2.6673 -6.3277 5.6409 44 1 -0.1420 -1.4155 1.5787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589533115.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:03 Heat of formation + Delta-G solvation = -42.545439 kcal Electronic energy + Delta-G solvation = -26841.004577 eV Core-core repulsion = 22914.984713 eV Total energy + Delta-G solvation = -3926.019864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.31529 -39.38635 -38.70641 -36.98248 -34.84374 -34.08877 -33.72454 -32.58353 -31.05946 -30.31787 -29.42671 -28.64364 -25.55108 -24.97637 -22.87886 -22.38004 -21.52044 -20.90261 -20.50923 -19.51628 -17.91539 -17.78149 -17.14505 -16.54956 -16.10993 -15.67569 -15.48092 -15.15774 -15.00485 -14.90536 -14.51986 -14.20165 -14.19433 -13.66329 -13.52871 -13.22997 -12.83720 -12.69007 -12.64628 -12.47217 -12.29509 -12.15057 -11.62526 -11.24631 -11.14826 -11.09567 -11.03940 -10.73952 -10.47619 -10.40768 -10.12843 -10.02590 -9.67381 -9.20136 -9.16200 -9.01291 -8.66643 -8.62867 -7.60873 -7.50022 -6.78296 -4.39511 1.07467 1.31899 2.23573 2.25129 2.83139 3.07318 3.09222 3.12207 3.17966 3.55697 3.89248 3.94092 4.03664 4.27626 4.54576 4.66147 4.66867 4.74401 4.87107 4.89901 5.05322 5.34400 5.40842 5.61145 5.61527 5.67014 5.82816 5.97125 5.99533 6.11478 6.24148 6.29878 6.33182 6.37921 6.54630 6.73495 6.81221 6.87278 6.90983 7.00635 7.04057 7.22986 7.39995 7.72308 7.78233 7.85601 7.94586 8.12500 8.21461 8.52405 8.82017 8.85354 8.98164 10.16557 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.028506 B = 0.001896 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.023916 B =14768.270612 C =15368.889163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.217 4.217 13 C -0.127 4.127 14 C 0.563 3.437 15 O -0.546 6.546 16 N -0.732 5.732 17 C 0.161 3.839 18 C -0.098 4.098 19 C -0.098 4.098 20 C -0.107 4.107 21 C -0.070 4.070 22 C -0.102 4.102 23 C 0.515 3.485 24 N -0.860 5.860 25 O -0.530 6.530 26 C -0.107 4.107 27 C -0.099 4.099 28 C -0.092 4.092 29 H 0.285 0.715 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.400 0.600 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.401 0.599 41 H 0.401 0.599 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.791 -21.516 8.134 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.232 4.232 11 C -0.116 4.116 12 C -0.237 4.237 13 C -0.130 4.130 14 C 0.354 3.646 15 O -0.424 6.424 16 N -0.387 5.387 17 C 0.038 3.962 18 C -0.098 4.098 19 C -0.117 4.117 20 C -0.125 4.125 21 C -0.070 4.070 22 C -0.142 4.142 23 C 0.300 3.700 24 N -0.425 5.425 25 O -0.405 6.405 26 C -0.125 4.125 27 C -0.117 4.117 28 C -0.112 4.112 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.235 0.765 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.229 0.771 41 H 0.232 0.768 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.441 -19.765 8.595 24.402 hybrid contribution 0.192 -0.283 -0.142 0.370 sum -11.248 -20.048 8.454 24.493 Atomic orbital electron populations 1.69792 1.07577 1.29783 1.33578 1.25965 0.94768 1.01542 0.92331 0.86291 0.80624 0.80541 0.79196 1.19456 1.19957 1.18387 1.19572 0.98141 0.91053 1.40142 0.90101 1.17603 0.91184 0.92465 0.89168 1.21096 1.03519 0.92794 1.05747 1.20428 0.96082 0.96715 0.98411 1.20345 1.01355 0.94646 1.07393 1.19465 0.96572 0.95308 1.01687 1.18865 0.83238 0.82771 0.79709 1.90699 1.66325 1.29965 1.55442 1.46003 1.30810 1.09878 1.51962 1.20103 0.88585 0.92199 0.95358 1.19974 0.97709 0.96031 0.96087 1.21084 0.96603 0.95126 0.98873 1.20918 0.99519 0.94471 0.97578 1.19219 0.97291 0.94510 0.96020 1.20661 0.96391 0.96407 1.00758 1.20643 0.84684 0.83800 0.80875 1.43911 1.34759 1.09109 1.54686 1.90806 1.65582 1.29857 1.54220 1.20911 0.97397 0.95560 0.98639 1.21073 0.99323 0.94056 0.97267 1.21624 0.96456 0.96421 0.96718 0.90433 0.88634 0.88930 0.89253 0.76464 0.90977 0.90939 0.85635 0.86191 0.87776 0.87780 0.77094 0.76839 0.86203 0.85664 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.95 10.97 55.55 0.61 -20.34 16 2 C 0.07 1.86 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.17 9.05 -37.73 -0.34 -12.52 16 8 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 9 C 0.10 2.62 5.57 -106.87 -0.60 2.03 16 10 C -0.21 -5.06 9.78 -38.81 -0.38 -5.44 16 11 C -0.10 -2.11 10.01 -39.73 -0.40 -2.50 16 12 C -0.22 -4.62 9.55 -38.92 -0.37 -4.99 16 13 C -0.13 -3.04 5.87 -105.04 -0.62 -3.66 16 14 C 0.56 12.57 7.77 -12.31 -0.10 12.47 16 15 O -0.55 -13.97 16.33 5.33 0.09 -13.88 16 16 N -0.73 -12.55 5.50 -62.42 -0.34 -12.89 16 17 C 0.16 2.40 5.80 -5.19 -0.03 2.37 16 18 C -0.10 -1.23 5.25 -104.62 -0.55 -1.78 16 19 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 20 C -0.11 -1.10 9.70 -39.58 -0.38 -1.48 16 21 C -0.07 -0.67 4.37 -104.63 -0.46 -1.13 16 22 C -0.10 -0.60 5.83 -29.04 -0.17 -0.77 16 23 C 0.52 4.05 8.09 -10.98 -0.09 3.96 16 24 N -0.86 -3.19 8.87 31.22 0.28 -2.92 16 25 O -0.53 -6.99 16.87 5.56 0.09 -6.90 16 26 C -0.11 -1.09 9.70 -39.58 -0.38 -1.48 16 27 C -0.10 -1.14 9.70 -39.58 -0.38 -1.52 16 28 C -0.09 -2.48 8.23 -38.44 -0.32 -2.80 16 29 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 30 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 31 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.09 1.58 6.38 -52.49 -0.33 1.25 16 33 H 0.40 6.10 6.48 -40.82 -0.26 5.83 16 34 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 35 H 0.07 1.12 8.08 -51.92 -0.42 0.70 16 36 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.10 0.38 8.09 -51.93 -0.42 -0.04 16 39 H 0.10 0.37 8.09 -51.93 -0.42 -0.05 16 40 H 0.40 0.15 8.83 -40.82 -0.36 -0.21 16 41 H 0.40 1.34 8.93 -40.82 -0.36 0.97 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 44 H 0.13 3.88 5.77 -52.49 -0.30 3.58 16 LS Contribution 381.85 15.07 5.75 5.75 Total: -1.00 -34.63 381.85 -9.98 -44.61 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -5.39 Total: 11.65 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -6.03 Total: -18.97 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.54 Total: -36.15 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.18 Total: -20.78 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.63 -9.98 -44.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589533115.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.061 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds