Wall clock time and date at job start Tue Mar 31 2020 20:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86793 * 119.99927 * 2 1 4 4 H 1.48505 * 109.46969 * 269.99890 * 3 2 1 5 5 H 1.48496 * 109.47429 * 29.99643 * 3 2 1 6 6 H 1.48503 * 109.47001 * 149.99921 * 3 2 1 7 7 C 1.39934 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00096 * 162.31170 * 7 2 1 9 9 C 1.41434 * 120.00399 * 342.30647 * 7 2 1 10 10 C 1.40787 * 120.18115 * 155.18507 * 9 7 2 11 11 C 1.37706 * 120.04369 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41356 * 359.97438 * 11 10 9 13 13 C 1.39884 * 120.35804 * 0.02562 * 12 11 10 14 14 C 1.47881 * 120.02774 * 180.02562 * 13 12 11 15 15 O 1.21546 * 120.00390 * 179.97438 * 14 13 12 16 16 N 1.34774 * 120.00014 * 359.97438 * 14 13 12 17 17 C 1.46497 * 120.00319 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47653 * 180.02562 * 17 16 14 19 19 C 1.38230 * 119.99959 * 269.72820 * 18 17 16 20 20 C 1.38240 * 120.00313 * 179.76278 * 19 18 17 21 21 C 1.38236 * 119.99246 * 0.48170 * 20 19 18 22 22 C 1.50697 * 119.99801 * 179.76662 * 21 20 19 23 23 C 1.50699 * 109.47302 * 270.02711 * 22 21 20 24 24 N 1.34784 * 120.00018 * 180.02562 * 23 22 21 25 25 O 1.21276 * 120.00428 * 359.97438 * 23 22 21 26 26 C 1.38232 * 120.00435 * 359.79532 * 21 20 19 27 27 C 1.38234 * 119.99932 * 359.95318 * 26 21 20 28 28 C 1.39031 * 119.94814 * 0.02562 * 13 12 11 29 29 H 0.96997 * 120.00049 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.97666 * 0.03467 * 10 9 7 31 31 H 1.07997 * 119.79224 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.82764 * 179.97438 * 12 11 10 33 33 H 0.97003 * 120.00172 * 0.02562 * 16 14 13 34 34 H 1.09001 * 109.47298 * 300.00607 * 17 16 14 35 35 H 1.09010 * 109.47401 * 59.99915 * 17 16 14 36 36 H 1.08002 * 120.00242 * 359.97438 * 19 18 17 37 37 H 1.07989 * 120.00563 * 180.25322 * 20 19 18 38 38 H 1.09001 * 109.47293 * 30.03006 * 22 21 20 39 39 H 1.09005 * 109.47422 * 150.02484 * 22 21 20 40 40 H 0.96996 * 119.99579 * 359.97438 * 24 23 22 41 41 H 0.96996 * 119.99756 * 180.02562 * 24 23 22 42 42 H 1.08000 * 120.00765 * 179.97438 * 26 21 20 43 43 H 1.08007 * 120.00459 * 180.02562 * 27 26 21 44 44 H 1.07998 * 120.20520 * 180.25560 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4397 2.6527 0.6999 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0497 -1.2342 -0.2836 9 6 1.3510 -2.4076 0.3733 10 6 1.8218 -3.6493 -0.0943 11 6 1.1797 -4.8117 0.2700 12 6 0.0706 -4.7699 1.0962 13 6 -0.4118 -3.5456 1.5707 14 6 -1.5974 -3.5095 2.4538 15 8 -2.0159 -2.4454 2.8662 16 7 -2.2140 -4.6564 2.8013 17 6 -3.3889 -4.6206 3.6757 18 6 -3.8842 -6.0245 3.9095 19 6 -4.8263 -6.5754 3.0612 20 6 -5.2771 -7.8650 3.2727 21 6 -4.7929 -8.6001 4.3386 22 6 -5.2881 -10.0041 4.5724 23 6 -6.4967 -9.9673 5.4718 24 7 -7.1127 -11.1144 5.8202 25 8 -6.9146 -8.9056 5.8829 26 6 -3.8550 -8.0473 5.1903 27 6 -3.4004 -6.7596 4.9757 28 6 0.2244 -2.3627 1.2114 29 1 -0.4850 0.8400 -0.0004 30 1 2.6873 -3.6901 -0.7391 31 1 1.5446 -5.7620 -0.0908 32 1 -0.4260 -5.6874 1.3756 33 1 -1.8799 -5.5056 2.4725 34 1 -3.1184 -4.1675 4.6295 35 1 -4.1753 -4.0314 3.2038 36 1 -5.2079 -5.9994 2.2310 37 1 -6.0101 -8.2968 2.6076 38 1 -5.5585 -10.4575 3.6187 39 1 -4.5016 -10.5929 5.0445 40 1 -6.7782 -11.9635 5.4916 41 1 -7.8908 -11.0906 6.3988 42 1 -3.4770 -8.6214 6.0233 43 1 -2.6673 -6.3277 5.6409 44 1 -0.1420 -1.4155 1.5787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589533115.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:02 Heat of formation + Delta-G solvation = -66.732270 kcal Electronic energy + Delta-G solvation = -26842.053397 eV Core-core repulsion = 22914.984713 eV Total energy + Delta-G solvation = -3927.068683 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.17758 -40.73852 -39.71146 -38.78417 -36.19194 -35.57579 -34.62380 -33.64690 -32.01843 -31.86482 -31.28116 -29.64586 -27.25945 -26.26017 -23.95790 -23.68846 -22.82056 -22.32560 -21.29808 -21.12388 -19.57579 -18.37810 -18.10439 -17.67423 -17.20122 -16.95541 -16.91617 -16.54944 -16.22075 -16.03491 -15.86471 -15.43266 -15.29832 -15.04985 -14.77623 -14.39637 -14.33427 -14.26148 -13.81417 -13.73940 -13.45158 -13.19595 -12.94648 -12.84100 -12.77140 -12.54101 -12.21083 -12.10508 -11.92360 -11.88636 -11.51048 -11.08819 -11.06278 -10.86999 -10.59434 -10.20047 -9.82529 -9.60510 -9.47235 -9.38479 -8.66542 -6.37951 0.22637 0.37384 0.50233 1.00998 1.36325 1.46536 1.52823 1.71447 2.08804 2.19422 2.22943 2.66134 2.78832 3.05568 3.58437 3.69785 3.80093 3.85158 4.04026 4.11980 4.19747 4.29408 4.42147 4.51819 4.55118 4.59476 4.64332 4.67906 4.79665 4.91458 5.05437 5.08854 5.15230 5.19180 5.30674 5.38909 5.42512 5.51986 5.61611 5.64894 5.86543 5.92573 5.95486 6.05363 6.05404 6.28490 6.50390 6.54648 6.67482 6.87872 6.94800 7.28050 7.43261 8.30420 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.028506 B = 0.001896 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.023916 B =14768.270612 C =15368.889163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.028 3.972 3 Si 0.983 3.017 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.497 4.497 8 H 0.085 0.915 9 C 0.066 3.934 10 C -0.216 4.216 11 C -0.095 4.095 12 C -0.197 4.197 13 C -0.138 4.138 14 C 0.560 3.440 15 O -0.590 6.590 16 N -0.707 5.707 17 C 0.164 3.836 18 C -0.113 4.113 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.068 4.068 22 C -0.099 4.099 23 C 0.513 3.487 24 N -0.839 5.839 25 O -0.593 6.593 26 C -0.113 4.113 27 C -0.108 4.108 28 C -0.131 4.131 29 H 0.286 0.714 30 H 0.110 0.890 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.412 0.588 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.126 0.874 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.420 0.580 41 H 0.405 0.595 42 H 0.142 0.858 43 H 0.128 0.872 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.651 -25.731 8.104 29.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.526 4.526 8 H 0.103 0.897 9 C 0.064 3.936 10 C -0.235 4.235 11 C -0.113 4.113 12 C -0.217 4.217 13 C -0.142 4.142 14 C 0.350 3.650 15 O -0.472 6.472 16 N -0.360 5.360 17 C 0.041 3.959 18 C -0.114 4.114 19 C -0.128 4.128 20 C -0.132 4.132 21 C -0.069 4.069 22 C -0.138 4.138 23 C 0.299 3.701 24 N -0.403 5.403 25 O -0.474 6.474 26 C -0.131 4.131 27 C -0.127 4.127 28 C -0.151 4.151 29 H 0.097 0.903 30 H 0.128 0.872 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.250 0.750 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.144 0.856 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.252 0.748 41 H 0.235 0.765 42 H 0.159 0.841 43 H 0.146 0.854 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.303 -24.113 8.555 27.971 hybrid contribution 0.039 0.687 -0.073 0.692 sum -11.264 -23.425 8.482 27.342 Atomic orbital electron populations 1.69896 1.09295 1.30613 1.35343 1.26875 0.95403 1.05029 0.91334 0.85195 0.79076 0.75709 0.79718 1.18066 1.19850 1.17783 1.19861 0.98562 0.92176 1.42048 0.89676 1.17959 0.91742 0.94018 0.89868 1.21417 1.03927 0.92734 1.05452 1.20922 0.95284 0.97776 0.97284 1.20834 1.00625 0.95001 1.05195 1.19758 0.96946 0.95608 1.01840 1.18785 0.83183 0.83445 0.79573 1.90673 1.67483 1.31873 1.57141 1.45805 1.30521 1.08737 1.50891 1.20132 0.87241 0.94233 0.94278 1.19727 0.99263 0.94737 0.97626 1.21203 0.96635 0.96051 0.98916 1.21218 0.99694 0.93931 0.98315 1.19668 0.96074 0.96241 0.94880 1.20765 0.96298 0.94569 1.02155 1.20986 0.84985 0.83653 0.80518 1.43762 1.34075 1.09041 1.53469 1.90794 1.67509 1.32192 1.56869 1.21226 0.97441 0.95124 0.99320 1.21206 0.99626 0.94829 0.96993 1.21425 0.98351 0.96322 0.99048 0.90329 0.87193 0.84227 0.84829 0.75014 0.91585 0.91875 0.85621 0.84172 0.84809 0.84738 0.74840 0.76458 0.84052 0.85381 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.99 10.97 21.82 0.24 -46.75 16 2 C 0.03 1.51 5.14 85.25 0.44 1.95 16 3 Si 0.98 40.26 29.59 68.60 2.03 42.29 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.50 -27.43 9.05 23.47 0.21 -27.22 16 8 H 0.09 4.40 7.91 -2.91 -0.02 4.38 16 9 C 0.07 3.66 5.57 -21.32 -0.12 3.54 16 10 C -0.22 -10.15 9.78 22.77 0.22 -9.92 16 11 C -0.09 -3.78 10.01 22.18 0.22 -3.56 16 12 C -0.20 -7.88 9.55 22.70 0.22 -7.67 16 13 C -0.14 -6.72 5.87 -20.14 -0.12 -6.83 16 14 C 0.56 25.63 7.77 86.80 0.67 26.31 16 15 O -0.59 -31.91 16.33 -3.86 -0.06 -31.97 16 16 N -0.71 -23.96 5.50 -469.67 -2.58 -26.55 16 17 C 0.16 4.98 5.80 85.63 0.50 5.47 16 18 C -0.11 -2.78 5.25 -19.87 -0.10 -2.88 16 19 C -0.11 -2.44 9.70 22.27 0.22 -2.23 16 20 C -0.11 -2.08 9.70 22.27 0.22 -1.87 16 21 C -0.07 -1.10 4.37 -19.87 -0.09 -1.19 16 22 C -0.10 -0.75 5.83 29.10 0.17 -0.58 16 23 C 0.51 6.64 8.09 87.66 0.71 7.34 16 24 N -0.84 -3.57 8.87 -173.53 -1.54 -5.11 16 25 O -0.59 -14.98 16.87 -3.02 -0.05 -15.03 16 26 C -0.11 -2.04 9.70 22.27 0.22 -1.82 16 27 C -0.11 -2.36 9.70 22.27 0.22 -2.14 16 28 C -0.13 -7.43 8.23 23.01 0.19 -7.24 16 29 H 0.29 15.03 8.30 -92.71 -0.77 14.26 16 30 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 31 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 32 H 0.13 4.12 6.38 -2.91 -0.02 4.10 16 33 H 0.41 11.72 6.48 -92.71 -0.60 11.12 16 34 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 35 H 0.06 2.04 8.08 -2.38 -0.02 2.02 16 36 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 37 H 0.14 1.92 8.06 -2.92 -0.02 1.89 16 38 H 0.13 0.27 8.09 -2.39 -0.02 0.25 16 39 H 0.13 0.25 8.09 -2.38 -0.02 0.23 16 40 H 0.42 -1.38 8.83 -92.71 -0.82 -2.20 16 41 H 0.40 1.70 8.93 -92.71 -0.83 0.87 16 42 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 43 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 44 H 0.10 6.16 5.77 -2.91 -0.02 6.15 16 Total: -1.00 -82.07 381.85 0.85 -81.22 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: -1.17 Total: 32.42 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 3.99 Total: -30.53 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -3.88 Total: -78.40 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -0.11 Total: -47.00 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -82.07 0.85 -81.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589533115.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.486 kcal (2) G-P(sol) polarization free energy of solvation -82.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds