Wall clock time and date at job start Tue Mar 31 2020 20:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00400 * 2 1 4 4 H 1.48495 * 109.47272 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46812 * 299.99535 * 3 2 1 6 6 H 1.48504 * 109.47052 * 59.99692 * 3 2 1 7 7 C 1.37874 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99925 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00302 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.88293 * 303.87670 * 9 7 2 11 11 C 1.55155 * 111.00564 * 179.97438 * 9 7 2 12 12 C 1.54324 * 102.94312 * 206.38580 * 11 9 7 13 13 N 1.47025 * 107.27004 * 22.19108 * 12 11 9 14 14 C 1.34775 * 125.64672 * 181.02814 * 13 12 11 15 15 O 1.21581 * 119.99739 * 180.02562 * 14 13 12 16 16 N 1.34778 * 120.00027 * 0.02562 * 14 13 12 17 17 C 1.46498 * 119.99827 * 180.02562 * 16 14 13 18 18 C 1.53007 * 109.47082 * 180.02562 * 17 16 14 19 19 O 1.42898 * 109.47223 * 64.99894 * 18 17 16 20 20 C 1.35950 * 116.99886 * 180.02562 * 19 18 17 21 21 C 1.38667 * 120.06437 * 0.02562 * 20 19 18 22 22 C 1.38178 * 119.96764 * 180.02562 * 21 20 19 23 23 C 1.38256 * 120.09980 * 359.95351 * 22 21 20 24 24 C 1.38255 * 120.12621 * 0.02562 * 23 22 21 25 25 C 1.38335 * 120.03003 * 359.97438 * 24 23 22 26 26 F 1.35100 * 120.04871 * 179.72780 * 25 24 23 27 27 C 1.47425 * 108.70348 * 1.28749 * 13 12 11 28 28 H 0.97002 * 119.99861 * 0.02562 * 1 2 3 29 29 H 0.96701 * 114.00037 * 56.11963 * 10 9 7 30 30 H 1.09001 * 110.72310 * 88.01717 * 11 9 7 31 31 H 1.09004 * 110.87110 * 324.81799 * 11 9 7 32 32 H 1.08999 * 109.87847 * 262.77435 * 12 11 9 33 33 H 1.08998 * 109.88301 * 141.61324 * 12 11 9 34 34 H 0.96998 * 120.00100 * 0.02562 * 16 14 13 35 35 H 1.08994 * 109.47187 * 60.00577 * 17 16 14 36 36 H 1.09008 * 109.47234 * 300.00050 * 17 16 14 37 37 H 1.09000 * 109.46353 * 305.00171 * 18 17 16 38 38 H 1.08998 * 109.47054 * 185.00115 * 18 17 16 39 39 H 1.08001 * 120.01092 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.95183 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.93822 * 180.02562 * 23 22 21 42 42 H 1.07998 * 119.98790 * 179.97438 * 24 23 22 43 43 H 1.08998 * 110.36103 * 94.48228 * 27 13 12 44 44 H 1.08997 * 110.36588 * 216.80492 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 8 0.3512 -2.5679 1.1087 11 6 2.2271 -3.7051 0.0005 12 6 1.3974 -4.8215 -0.6679 13 7 0.3460 -4.1684 -1.4614 14 6 -0.6008 -4.8007 -2.1826 15 8 -1.4237 -4.1561 -2.8035 16 7 -0.6353 -6.1477 -2.2157 17 6 -1.6641 -6.8350 -3.0002 18 6 -1.4805 -8.3482 -2.8676 19 8 -1.7136 -8.7395 -1.5132 20 6 -1.5897 -10.0618 -1.2228 21 6 -1.2505 -10.9633 -2.2203 22 6 -1.1257 -12.3070 -1.9230 23 6 -1.3375 -12.7540 -0.6319 24 6 -1.6755 -11.8586 0.3658 25 6 -1.8019 -10.5123 0.0740 26 9 -2.1375 -9.6378 1.0476 27 6 0.5027 -2.7074 -1.3424 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2783 -1.8351 1.1503 30 1 2.4972 -3.9827 1.0194 31 1 3.1185 -3.4831 -0.5863 32 1 0.9461 -5.4554 0.0954 33 1 2.0360 -5.4189 -1.3186 34 1 0.0210 -6.6620 -1.7201 35 1 -1.5742 -6.5482 -4.0478 36 1 -2.6506 -6.5552 -2.6302 37 1 -0.4637 -8.6171 -3.1537 38 1 -2.1887 -8.8586 -3.5203 39 1 -1.0840 -10.6154 -3.2290 40 1 -0.8618 -13.0089 -2.7002 41 1 -1.2388 -13.8047 -0.4024 42 1 -1.8409 -12.2103 1.3734 43 1 1.0936 -2.3205 -2.1725 44 1 -0.4730 -2.2225 -1.3117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591893403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:05 Heat of formation + Delta-G solvation = -151.934139 kcal Electronic energy + Delta-G solvation = -29047.869454 eV Core-core repulsion = 24686.336916 eV Total energy + Delta-G solvation = -4361.532538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.81731 -41.37559 -40.91624 -39.18908 -38.47840 -36.08589 -35.85914 -34.15837 -32.21507 -31.64469 -31.18357 -29.98824 -29.42040 -26.95758 -25.03559 -24.07640 -23.45288 -22.66957 -21.46251 -21.09420 -19.54108 -19.34041 -18.89160 -18.11955 -17.68938 -17.48552 -17.13376 -16.89662 -16.80717 -16.23453 -16.10088 -15.97621 -15.53682 -15.34685 -15.20693 -14.79350 -14.71004 -14.60874 -14.07850 -13.82342 -13.69069 -13.49583 -13.32194 -13.21024 -12.96097 -12.86289 -12.54051 -12.49344 -12.30803 -12.19464 -12.11528 -12.08881 -11.97676 -11.37009 -11.23022 -10.65934 -10.36459 -10.23282 -9.91807 -9.34423 -9.20969 -8.25653 -6.42970 0.15437 0.29359 1.41258 1.44219 1.55656 1.65052 2.00291 2.13803 2.38161 2.63797 3.00285 3.05978 3.27774 3.59191 3.79112 3.84969 4.00850 4.02974 4.10771 4.17214 4.21032 4.31313 4.33292 4.35581 4.43491 4.59079 4.67536 4.74684 4.75532 5.01219 5.03343 5.08028 5.12643 5.27576 5.28871 5.36602 5.43281 5.44246 5.45820 5.73009 5.76478 6.01132 6.13762 6.30110 6.64766 7.02207 7.29718 7.38590 7.53205 8.80378 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.002293 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.802715 B =12210.635691 C =12734.269147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.022 3.978 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.230 3.770 10 O -0.592 6.592 11 C -0.110 4.110 12 C 0.108 3.892 13 N -0.633 5.633 14 C 0.709 3.291 15 O -0.644 6.644 16 N -0.730 5.730 17 C 0.138 3.862 18 C 0.054 3.946 19 O -0.333 6.333 20 C 0.080 3.920 21 C -0.183 4.183 22 C -0.084 4.084 23 C -0.127 4.127 24 C -0.121 4.121 25 C 0.024 3.976 26 F -0.157 7.157 27 C 0.125 3.875 28 H 0.270 0.730 29 H 0.377 0.623 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.407 0.593 35 H 0.101 0.899 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.163 0.837 40 H 0.166 0.834 41 H 0.164 0.836 42 H 0.153 0.847 43 H 0.046 0.954 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 -28.309 -6.103 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.178 4.178 3 Si 0.794 3.206 4 H -0.185 1.185 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.591 4.591 8 H 0.091 0.909 9 C 0.190 3.810 10 O -0.401 6.401 11 C -0.148 4.148 12 C -0.014 4.014 13 N -0.369 5.369 14 C 0.411 3.589 15 O -0.527 6.527 16 N -0.387 5.387 17 C 0.014 3.986 18 C -0.020 4.020 19 O -0.248 6.248 20 C 0.034 3.966 21 C -0.201 4.201 22 C -0.101 4.101 23 C -0.145 4.145 24 C -0.139 4.139 25 C 0.005 3.995 26 F -0.136 7.136 27 C 0.001 3.999 28 H 0.080 0.920 29 H 0.227 0.773 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.243 0.757 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.180 0.820 40 H 0.183 0.817 41 H 0.182 0.818 42 H 0.170 0.830 43 H 0.065 0.935 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.221 -28.144 -6.322 28.846 hybrid contribution -0.240 1.994 0.376 2.043 sum -0.019 -26.150 -5.946 26.818 Atomic orbital electron populations 1.69706 1.07350 1.28457 1.50465 1.25895 0.95759 1.03097 0.93077 0.85343 0.79177 0.78659 0.77451 1.18521 1.20851 1.20636 1.21860 0.94089 0.91054 1.52099 0.90926 1.19928 0.86237 0.93384 0.81467 1.86058 1.51213 1.52579 1.50240 1.22605 0.97500 0.93332 1.01373 1.22086 0.89007 0.95893 0.94398 1.47841 1.31066 1.08284 1.49749 1.15741 0.80786 0.82594 0.79751 1.90840 1.43445 1.66865 1.51519 1.44921 1.35833 1.03251 1.54728 1.21380 0.90983 0.89459 0.96753 1.23302 1.04269 0.93289 0.81184 1.86187 1.85702 1.21367 1.31545 1.19300 0.99815 0.84191 0.93330 1.21534 1.05212 0.94014 0.99352 1.21501 0.96139 0.94845 0.97656 1.21366 1.00020 1.00985 0.92149 1.21334 1.00448 0.89506 1.02662 1.17654 1.09404 0.88667 0.83791 1.91462 1.90665 1.69529 1.61942 1.22756 0.99613 0.77505 0.99977 0.92032 0.77273 0.89895 0.88836 0.91830 0.88945 0.75695 0.88134 0.92795 0.88439 0.86922 0.81971 0.81667 0.81832 0.82950 0.93533 0.94523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.54 10.72 21.45 0.23 -51.31 16 2 C 0.02 1.17 5.30 84.65 0.45 1.61 16 3 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.55 -29.15 8.25 25.60 0.21 -28.94 16 8 H 0.07 3.66 7.77 -2.91 -0.02 3.64 16 9 C 0.23 11.52 0.89 -10.07 -0.01 11.51 16 10 O -0.59 -32.19 13.19 -148.98 -1.97 -34.15 16 11 C -0.11 -4.29 6.12 31.78 0.19 -4.09 16 12 C 0.11 3.72 6.15 86.73 0.53 4.25 16 13 N -0.63 -27.21 3.32 -829.32 -2.76 -29.96 16 14 C 0.71 30.02 8.49 179.05 1.52 31.54 16 15 O -0.64 -32.83 16.60 -3.97 -0.07 -32.89 16 16 N -0.73 -22.12 5.46 -478.53 -2.61 -24.73 16 17 C 0.14 3.27 6.06 86.38 0.52 3.79 16 18 C 0.05 0.82 4.87 71.98 0.35 1.17 16 19 O -0.33 -7.66 9.95 -92.98 -0.92 -8.59 16 20 C 0.08 1.59 6.69 22.53 0.15 1.74 16 21 C -0.18 -2.17 9.04 22.36 0.20 -1.97 16 22 C -0.08 -0.69 10.04 22.26 0.22 -0.47 16 23 C -0.13 -1.19 10.04 22.28 0.22 -0.97 16 24 C -0.12 -1.82 10.02 22.30 0.22 -1.60 16 25 C 0.02 0.55 7.31 22.45 0.16 0.71 16 26 F -0.16 -4.58 17.11 44.97 0.77 -3.81 16 27 C 0.13 6.39 5.64 86.93 0.49 6.88 16 28 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.38 21.65 6.93 -74.06 -0.51 21.14 16 30 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.09 3.29 8.02 -2.38 -0.02 3.28 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.41 10.50 7.46 -92.71 -0.69 9.81 16 35 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.10 1.00 7.66 -2.39 -0.02 0.98 16 38 H 0.11 1.03 7.67 -2.39 -0.02 1.01 16 39 H 0.16 1.01 6.30 -2.91 -0.02 0.99 16 40 H 0.17 0.27 8.06 -2.91 -0.02 0.24 16 41 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 42 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.05 2.41 8.04 -2.39 -0.02 2.39 16 44 H 0.04 2.16 7.64 -2.39 -0.02 2.14 16 Total: -1.00 -76.41 372.80 -0.01 -76.41 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: -0.16 Total: 39.52 kcal Atomic # 6 Polarization: 19.72 SS G_CDS: 5.45 Total: 25.17 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -5.14 Total: -106.01 kcal Atomic # 8 Polarization: -72.68 SS G_CDS: -2.96 Total: -75.64 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.77 Total: -3.81 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -76.41 -0.01 -76.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591893403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.520 kcal (2) G-P(sol) polarization free energy of solvation -76.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds