Wall clock time and date at job start Tue Mar 31 2020 20:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99690 * 2 1 4 4 H 1.48501 * 109.47294 * 239.99783 * 3 2 1 5 5 H 1.48498 * 109.47420 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46970 * 119.99787 * 3 2 1 7 7 C 1.37879 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99779 * 359.97438 * 7 2 1 10 10 O 1.42906 * 110.88756 * 62.43306 * 9 7 2 11 11 C 1.55161 * 111.03748 * 186.33165 * 9 7 2 12 12 C 1.54337 * 103.01905 * 153.39636 * 11 9 7 13 13 N 1.47026 * 107.26814 * 338.14586 * 12 11 9 14 14 C 1.34774 * 125.64818 * 178.85011 * 13 12 11 15 15 O 1.21586 * 120.00048 * 179.68837 * 14 13 12 16 16 N 1.34773 * 119.99940 * 359.69197 * 14 13 12 17 17 C 1.46506 * 119.99969 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47237 * 179.72043 * 17 16 14 19 19 O 1.42900 * 109.46823 * 64.99704 * 18 17 16 20 20 C 1.35962 * 116.99860 * 179.97438 * 19 18 17 21 21 C 1.38656 * 120.06176 * 359.72674 * 20 19 18 22 22 C 1.38184 * 119.96967 * 179.71932 * 21 20 19 23 23 C 1.38263 * 120.09326 * 0.56074 * 22 21 20 24 24 C 1.38254 * 120.12289 * 359.71635 * 23 22 21 25 25 C 1.38330 * 120.03402 * 0.02562 * 24 23 22 26 26 F 1.35098 * 120.04751 * 180.02562 * 25 24 23 27 27 C 1.47427 * 108.69950 * 358.58015 * 13 12 11 28 28 H 0.96997 * 120.00236 * 0.02562 * 1 2 3 29 29 H 0.96706 * 113.99182 * 297.57145 * 10 9 7 30 30 H 1.08991 * 110.72238 * 271.95729 * 11 9 7 31 31 H 1.08997 * 110.71284 * 35.23473 * 11 9 7 32 32 H 1.08997 * 109.99287 * 218.66973 * 12 11 9 33 33 H 1.08998 * 109.77915 * 97.50115 * 12 11 9 34 34 H 0.97005 * 120.00161 * 359.72198 * 16 14 13 35 35 H 1.09001 * 109.46512 * 299.72412 * 17 16 14 36 36 H 1.08998 * 109.47174 * 59.71534 * 17 16 14 37 37 H 1.09000 * 109.47230 * 184.99559 * 18 17 16 38 38 H 1.08995 * 109.47026 * 305.00375 * 18 17 16 39 39 H 1.07998 * 120.01499 * 359.97438 * 21 20 19 40 40 H 1.07992 * 119.95294 * 180.27543 * 22 21 20 41 41 H 1.07994 * 119.93524 * 179.74637 * 23 22 21 42 42 H 1.08005 * 119.98523 * 179.97438 * 24 23 22 43 43 H 1.09004 * 110.36238 * 143.19263 * 27 13 12 44 44 H 1.08994 * 110.37047 * 265.40505 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 0.4609 -2.6312 -1.1838 11 6 2.2193 -3.7011 0.1585 12 6 1.3293 -4.7804 0.8105 13 7 0.2065 -4.0871 1.4587 14 6 -0.8064 -4.6807 2.1207 15 8 -1.6823 -4.0044 2.6245 16 7 -0.8482 -6.0237 2.2244 17 6 -1.9495 -6.6690 2.9435 18 6 -1.7623 -8.1870 2.9072 19 8 -0.5810 -8.5387 3.6303 20 6 -0.2678 -9.8601 3.6959 21 6 -1.0835 -10.7985 3.0821 22 6 -0.7603 -12.1405 3.1450 23 6 0.3693 -12.5503 3.8291 24 6 1.1822 -11.6184 4.4474 25 6 0.8664 -10.2732 4.3832 26 9 1.6608 -9.3623 4.9868 27 6 0.3755 -2.6348 1.2701 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2252 -1.9558 -1.2759 30 1 2.5838 -4.0339 -0.8132 31 1 3.0498 -3.4429 0.8155 32 1 1.9010 -5.3357 1.5540 33 1 0.9535 -5.4600 0.0456 34 1 -0.1515 -6.5634 1.8190 35 1 -1.9562 -6.3283 3.9789 36 1 -2.8955 -6.4080 2.4692 37 1 -2.6256 -8.6706 3.3643 38 1 -1.6665 -8.5166 1.8727 39 1 -1.9688 -10.4803 2.5517 40 1 -1.3933 -12.8708 2.6631 41 1 0.6172 -13.6001 3.8801 42 1 2.0637 -11.9410 4.9815 43 1 -0.5922 -2.1571 1.1166 44 1 0.8817 -2.1968 2.1303 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591893407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:10 Heat of formation + Delta-G solvation = -127.981480 kcal Electronic energy + Delta-G solvation = -28998.629238 eV Core-core repulsion = 24638.135365 eV Total energy + Delta-G solvation = -4360.493873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.99861 -40.44214 -39.56589 -37.98443 -37.28923 -34.54637 -34.18135 -32.19707 -31.12143 -30.91016 -30.02712 -28.95241 -27.65382 -25.17283 -24.04186 -22.86113 -22.62016 -21.82298 -19.65798 -19.55028 -18.86802 -17.68729 -17.37995 -17.02618 -16.84705 -16.62207 -15.81321 -15.58607 -15.21401 -15.16843 -14.87303 -14.75295 -14.52440 -14.23488 -13.91890 -13.64158 -13.14868 -13.02495 -12.79640 -12.72988 -12.57924 -12.35279 -12.04910 -11.81358 -11.61833 -11.50535 -11.44395 -11.27506 -10.99148 -10.79290 -10.57201 -10.46556 -10.16596 -9.60934 -9.36009 -9.32980 -8.85143 -8.66052 -8.57599 -8.32886 -7.65185 -6.24106 -4.33873 0.71642 0.85854 2.65652 3.11931 3.17942 3.25353 3.30460 3.32475 3.77517 3.88507 4.25815 4.28399 4.39230 4.45931 4.59092 4.71440 4.76692 4.81896 4.91413 5.02864 5.05452 5.45084 5.50198 5.54607 5.64555 5.68759 5.70261 5.76886 5.81835 5.96245 6.04989 6.14588 6.25216 6.54721 6.71096 6.74309 6.92657 6.93135 6.99569 7.26922 7.36084 7.66661 7.77736 8.07054 8.55890 8.70176 9.15143 9.33215 9.41396 10.82901 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022587 B = 0.002243 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.328669 B =12480.554934 C =12917.610821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.627 5.627 14 C 0.717 3.283 15 O -0.598 6.598 16 N -0.750 5.750 17 C 0.144 3.856 18 C 0.047 3.953 19 O -0.302 6.302 20 C 0.101 3.899 21 C -0.184 4.184 22 C -0.090 4.090 23 C -0.132 4.132 24 C -0.117 4.117 25 C 0.069 3.931 26 F -0.130 7.130 27 C 0.114 3.886 28 H 0.270 0.730 29 H 0.381 0.619 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.396 0.604 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.085 0.915 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 -25.002 5.787 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.364 5.364 14 C 0.419 3.581 15 O -0.477 6.477 16 N -0.408 5.408 17 C 0.020 3.980 18 C -0.029 4.029 19 O -0.215 6.215 20 C 0.054 3.946 21 C -0.203 4.203 22 C -0.108 4.108 23 C -0.150 4.150 24 C -0.136 4.136 25 C 0.049 3.951 26 F -0.109 7.109 27 C -0.008 4.008 28 H 0.080 0.920 29 H 0.231 0.769 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.229 0.771 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.156 0.844 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.159 0.841 43 H 0.104 0.896 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.249 -24.689 6.220 25.560 hybrid contribution 0.367 1.107 -0.036 1.167 sum -1.882 -23.582 6.185 24.452 Atomic orbital electron populations 1.69711 1.05965 1.27980 1.49389 1.25083 0.95045 0.99733 0.93381 0.86463 0.79518 0.82135 0.78779 1.20026 1.21111 1.20029 1.21412 0.93590 0.90057 1.52562 0.91595 1.19628 0.86644 0.91532 0.81405 1.86102 1.51512 1.57144 1.44377 1.22590 0.97566 0.95177 1.00024 1.21931 0.88342 0.96051 0.95523 1.47919 1.23173 1.09784 1.55505 1.15476 0.81934 0.81209 0.79467 1.90885 1.39771 1.63248 1.53810 1.45023 1.29054 1.05613 1.61130 1.21134 0.90774 0.87619 0.98508 1.23254 0.86606 0.96525 0.96466 1.86241 1.44269 1.20022 1.70964 1.19064 0.94161 0.84264 0.97108 1.21216 1.01417 0.93425 1.04248 1.21034 0.96831 0.95106 0.97857 1.20940 0.95295 0.99698 0.99110 1.21062 1.01288 0.90216 1.01036 1.17060 0.90642 0.87020 1.00401 1.91535 1.72154 1.66060 1.81128 1.23135 1.02544 0.75612 0.99521 0.91962 0.76947 0.90797 0.90422 0.93057 0.92785 0.77053 0.90581 0.89334 0.90010 0.90893 0.84381 0.85034 0.84871 0.84071 0.89638 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.06 10.69 55.43 0.59 -23.47 16 2 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 3 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.11 8.27 -34.44 -0.28 -14.40 16 8 H 0.07 1.69 7.79 -52.49 -0.41 1.28 16 9 C 0.25 6.08 0.87 -89.62 -0.08 6.00 16 10 O -0.58 -14.92 13.16 -35.23 -0.46 -15.39 16 11 C -0.12 -2.33 6.13 -24.89 -0.15 -2.48 16 12 C 0.11 1.90 6.15 -3.05 -0.02 1.88 16 13 N -0.63 -13.40 3.33 -176.23 -0.59 -13.99 16 14 C 0.72 14.98 8.49 -86.92 -0.74 14.24 16 15 O -0.60 -14.70 16.60 5.29 0.09 -14.61 16 16 N -0.75 -11.65 5.46 -65.22 -0.36 -12.00 16 17 C 0.14 1.77 6.06 -4.04 -0.02 1.74 16 18 C 0.05 0.41 4.87 37.16 0.18 0.59 16 19 O -0.30 -3.47 9.95 -19.62 -0.20 -3.67 16 20 C 0.10 1.03 6.69 -39.18 -0.26 0.77 16 21 C -0.18 -1.38 9.04 -39.45 -0.36 -1.74 16 22 C -0.09 -0.55 10.04 -39.59 -0.40 -0.95 16 23 C -0.13 -0.82 10.04 -39.57 -0.40 -1.21 16 24 C -0.12 -0.92 10.02 -39.54 -0.40 -1.31 16 25 C 0.07 0.74 7.31 -39.30 -0.29 0.45 16 26 F -0.13 -1.69 17.11 2.25 0.04 -1.66 16 27 C 0.11 2.81 5.38 -2.53 -0.01 2.80 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.38 10.01 7.56 45.56 0.34 10.36 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.08 1.48 8.03 -51.93 -0.42 1.07 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.40 5.45 7.46 -40.82 -0.30 5.15 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 0.51 7.65 -51.93 -0.40 0.11 16 38 H 0.07 0.53 7.68 -51.93 -0.40 0.13 16 39 H 0.14 0.75 6.30 -52.49 -0.33 0.42 16 40 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 42 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 43 H 0.09 2.37 7.33 -51.93 -0.38 1.99 16 44 H 0.06 1.47 8.03 -51.93 -0.42 1.05 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -32.51 372.84 -8.83 -41.35 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -5.23 Total: 14.14 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -3.32 Total: 8.15 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.35 Total: -49.46 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.57 Total: -33.67 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.51 -8.83 -41.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591893407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.635 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds