Wall clock time and date at job start Tue Mar 31 2020 20:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00381 * 2 1 4 4 H 1.48508 * 109.46822 * 269.99826 * 3 2 1 5 5 H 1.48504 * 109.47200 * 29.99108 * 3 2 1 6 6 H 1.48495 * 109.47587 * 149.99625 * 3 2 1 7 7 C 1.37883 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99762 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00089 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.88510 * 62.42780 * 9 7 2 11 11 C 1.55158 * 111.03732 * 186.33226 * 9 7 2 12 12 C 1.54328 * 103.02217 * 153.39658 * 11 9 7 13 13 N 1.47025 * 107.26292 * 338.13982 * 12 11 9 14 14 C 1.34777 * 125.64714 * 178.85164 * 13 12 11 15 15 O 1.21587 * 120.00216 * 179.69227 * 14 13 12 16 16 N 1.34782 * 119.99652 * 359.68848 * 14 13 12 17 17 C 1.46507 * 119.99767 * 180.02562 * 16 14 13 18 18 C 1.52993 * 109.47265 * 180.02562 * 17 16 14 19 19 O 1.42904 * 109.47104 * 64.99859 * 18 17 16 20 20 C 1.35945 * 116.99976 * 180.02562 * 19 18 17 21 21 C 1.38702 * 120.02745 * 180.02562 * 20 19 18 22 22 C 1.38153 * 119.96923 * 179.97438 * 21 20 19 23 23 C 1.38449 * 120.03127 * 0.02562 * 22 21 20 24 24 F 1.35104 * 119.97249 * 179.97438 * 23 22 21 25 25 C 1.38454 * 120.06119 * 0.24974 * 23 22 21 26 26 C 1.38160 * 120.02817 * 359.49261 * 25 23 22 27 27 C 1.47420 * 108.70419 * 358.58595 * 13 12 11 28 28 H 0.96997 * 120.00121 * 0.02562 * 1 2 3 29 29 H 0.96701 * 113.99688 * 297.57543 * 10 9 7 30 30 H 1.09003 * 110.71817 * 271.95569 * 11 9 7 31 31 H 1.09000 * 110.71901 * 35.22412 * 11 9 7 32 32 H 1.08995 * 109.99070 * 218.66622 * 12 11 9 33 33 H 1.09001 * 109.77782 * 97.49381 * 12 11 9 34 34 H 0.96996 * 120.00575 * 0.02562 * 16 14 13 35 35 H 1.09005 * 109.47025 * 59.99918 * 17 16 14 36 36 H 1.09001 * 109.47299 * 300.00783 * 17 16 14 37 37 H 1.09003 * 109.47395 * 305.00355 * 18 17 16 38 38 H 1.08993 * 109.47331 * 185.00311 * 18 17 16 39 39 H 1.07998 * 120.01822 * 359.97438 * 21 20 19 40 40 H 1.08004 * 119.98726 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.99315 * 179.72775 * 25 23 22 42 42 H 1.07994 * 120.01446 * 180.23098 * 26 25 23 43 43 H 1.08994 * 110.36686 * 143.19578 * 27 13 12 44 44 H 1.09005 * 110.36708 * 265.40680 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.4615 -2.6317 -1.1832 11 6 2.2189 -3.7012 0.1609 12 6 1.3284 -4.7802 0.8126 13 7 0.2052 -4.0864 1.4597 14 6 -0.8081 -4.6796 2.1213 15 8 -1.6844 -4.0031 2.6242 16 7 -0.8502 -6.0227 2.2254 17 6 -1.9520 -6.6676 2.9441 18 6 -1.7609 -8.1853 2.9150 19 8 -0.5809 -8.5309 3.6433 20 6 -0.2642 -9.8510 3.7147 21 6 0.8676 -10.2568 4.4063 22 6 1.1880 -11.5987 4.4785 23 6 0.3804 -12.5382 3.8605 24 9 0.6952 -13.8501 3.9314 25 6 -0.7465 -12.1340 3.1650 26 6 -1.0722 -10.7932 3.0956 27 6 0.3744 -2.6342 1.2706 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2244 -1.9563 -1.2761 30 1 2.5841 -4.0345 -0.8105 31 1 3.0490 -3.4428 0.8183 32 1 1.8996 -5.3351 1.5567 33 1 0.9531 -5.4600 0.0477 34 1 -0.1510 -6.5624 1.8246 35 1 -2.8973 -6.4108 2.4660 36 1 -1.9625 -6.3228 3.9781 37 1 -1.6612 -8.5192 1.8822 38 1 -2.6244 -8.6690 3.3715 39 1 1.4980 -9.5241 4.8881 40 1 2.0694 -11.9150 5.0166 41 1 -1.3732 -12.8675 2.6796 42 1 -1.9533 -10.4785 2.5562 43 1 -0.5931 -2.1566 1.1163 44 1 0.8801 -2.1960 2.1310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591915550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:19 Heat of formation + Delta-G solvation = -129.961449 kcal Electronic energy + Delta-G solvation = -28603.397679 eV Core-core repulsion = 24242.817948 eV Total energy + Delta-G solvation = -4360.579731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.15478 -40.54743 -39.60309 -37.85160 -37.26746 -34.54487 -34.20848 -32.21900 -31.72235 -30.73066 -29.84222 -28.84943 -27.67727 -25.18482 -24.09208 -23.01801 -22.57536 -21.83028 -19.68553 -19.57796 -18.79959 -17.79221 -17.63082 -17.06753 -16.85592 -16.50897 -15.87593 -15.49691 -15.37852 -15.09647 -14.94045 -14.68089 -14.35032 -14.07443 -14.01588 -13.78050 -13.36482 -13.09946 -12.95756 -12.82012 -12.70134 -12.50611 -12.11799 -11.90515 -11.63844 -11.42309 -11.26317 -11.15082 -11.02895 -10.81769 -10.59608 -10.46187 -10.18732 -9.64449 -9.61679 -9.35668 -8.88439 -8.68605 -8.49424 -8.34923 -7.68330 -6.26404 -4.36112 0.72818 0.81502 2.71931 3.08844 3.16361 3.22376 3.29463 3.31797 3.74337 3.92366 4.22050 4.26402 4.33910 4.43169 4.51698 4.67194 4.73831 4.84832 4.93255 5.00708 5.11249 5.41755 5.42731 5.53865 5.64521 5.66830 5.69291 5.74488 5.78324 5.81675 6.02002 6.11610 6.28644 6.51917 6.68100 6.71482 6.89812 6.95426 6.96769 7.24255 7.33621 7.63745 7.75631 8.04661 8.52879 8.68162 9.11973 9.31068 9.39259 10.80636 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024697 B = 0.002014 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.482969 B =13899.981880 C =14426.548747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.627 5.627 14 C 0.717 3.283 15 O -0.598 6.598 16 N -0.750 5.750 17 C 0.144 3.856 18 C 0.046 3.954 19 O -0.305 6.305 20 C 0.125 3.875 21 C -0.123 4.123 22 C -0.112 4.112 23 C 0.055 3.945 24 F -0.143 7.143 25 C -0.112 4.112 26 C -0.183 4.183 27 C 0.114 3.886 28 H 0.270 0.730 29 H 0.381 0.619 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.396 0.604 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.085 0.915 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.297 -22.482 6.447 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.392 6.392 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.364 5.364 14 C 0.419 3.581 15 O -0.477 6.477 16 N -0.408 5.408 17 C 0.019 3.981 18 C -0.029 4.029 19 O -0.219 6.219 20 C 0.080 3.920 21 C -0.142 4.142 22 C -0.131 4.131 23 C 0.036 3.964 24 F -0.122 7.122 25 C -0.131 4.131 26 C -0.201 4.201 27 C -0.008 4.008 28 H 0.080 0.920 29 H 0.231 0.769 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.230 0.770 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.104 0.896 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.680 -22.264 6.857 23.357 hybrid contribution 0.250 0.690 -0.166 0.753 sum -1.430 -21.574 6.691 22.633 Atomic orbital electron populations 1.69719 1.05967 1.27884 1.49449 1.25086 0.95047 0.99757 0.93386 0.86406 0.79771 0.82471 0.78260 1.20427 1.21026 1.19713 1.21453 0.93621 0.90039 1.52469 0.91544 1.19637 0.86657 0.91550 0.81411 1.86100 1.51569 1.57140 1.44346 1.22592 0.97561 0.95189 1.00045 1.21926 0.88317 0.96044 0.95522 1.47926 1.23145 1.09795 1.55535 1.15486 0.81931 0.81229 0.79481 1.90889 1.39737 1.63233 1.53829 1.45028 1.28869 1.05598 1.61340 1.21136 0.90744 0.87721 0.98459 1.23229 0.86789 0.96481 0.96424 1.86195 1.44196 1.20798 1.70692 1.19054 0.94287 0.83210 0.95496 1.20343 0.96725 0.95485 1.01597 1.20983 1.00100 0.91901 1.00119 1.17591 0.97365 0.78152 1.03341 1.91494 1.92794 1.32769 1.95093 1.20946 0.96358 0.96509 0.99284 1.21158 1.01962 0.92613 1.04415 1.23131 1.02547 0.75609 0.99510 0.92009 0.76928 0.90793 0.90421 0.93074 0.92765 0.77046 0.89429 0.90587 0.90966 0.90077 0.83951 0.84035 0.84486 0.84349 0.89647 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.77 10.69 55.43 0.59 -23.17 16 2 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 3 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -13.89 8.27 -34.44 -0.28 -14.17 16 8 H 0.07 1.68 7.79 -52.48 -0.41 1.27 16 9 C 0.25 5.95 0.87 -89.62 -0.08 5.87 16 10 O -0.58 -14.72 13.16 -35.23 -0.46 -15.18 16 11 C -0.12 -2.27 6.13 -24.89 -0.15 -2.42 16 12 C 0.11 1.82 6.15 -3.06 -0.02 1.81 16 13 N -0.63 -12.96 3.33 -176.24 -0.59 -13.54 16 14 C 0.72 14.41 8.49 -86.91 -0.74 13.67 16 15 O -0.60 -14.31 16.60 5.29 0.09 -14.22 16 16 N -0.75 -10.93 5.46 -65.22 -0.36 -11.29 16 17 C 0.14 1.64 6.06 -4.04 -0.02 1.61 16 18 C 0.05 0.36 4.87 37.15 0.18 0.54 16 19 O -0.31 -2.97 10.08 -19.57 -0.20 -3.17 16 20 C 0.13 1.11 6.69 -39.24 -0.26 0.85 16 21 C -0.12 -1.01 9.98 -39.44 -0.39 -1.41 16 22 C -0.11 -0.87 10.02 -39.54 -0.40 -1.26 16 23 C 0.05 0.47 7.30 -39.42 -0.29 0.18 16 24 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 25 C -0.11 -0.84 10.02 -39.53 -0.40 -1.24 16 26 C -0.18 -1.36 9.04 -39.44 -0.36 -1.71 16 27 C 0.11 2.75 5.38 -2.53 -0.01 2.74 16 28 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.38 9.90 7.56 45.56 0.34 10.24 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.40 5.01 7.46 -40.82 -0.30 4.71 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 38 H 0.08 0.45 7.66 -51.93 -0.40 0.05 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 41 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.14 0.75 6.30 -52.49 -0.33 0.42 16 43 H 0.09 2.33 7.33 -51.93 -0.38 1.95 16 44 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -31.35 373.02 -8.83 -40.18 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -5.23 Total: 14.01 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -3.32 Total: 6.80 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.35 Total: -48.00 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.57 Total: -32.58 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.35 -8.83 -40.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591915550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.781 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds