Wall clock time and date at job start Tue Mar 31 2020 20:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99834 * 2 1 4 4 H 1.48502 * 109.46740 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47205 * 299.99869 * 3 2 1 6 6 H 1.48497 * 109.47257 * 59.99886 * 3 2 1 7 7 C 1.37875 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99733 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00080 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.88675 * 303.88153 * 9 7 2 11 11 C 1.55161 * 111.00232 * 179.97438 * 9 7 2 12 12 C 1.54321 * 102.93821 * 206.38873 * 11 9 7 13 13 N 1.47019 * 107.27421 * 22.19143 * 12 11 9 14 14 C 1.34780 * 125.64920 * 181.02102 * 13 12 11 15 15 O 1.21584 * 120.00059 * 180.02562 * 14 13 12 16 16 N 1.34783 * 120.00006 * 0.02955 * 14 13 12 17 17 C 1.46493 * 119.99933 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.47000 * 179.97438 * 17 16 14 19 19 O 1.42904 * 109.47066 * 65.00368 * 18 17 16 20 20 C 1.35891 * 116.99987 * 180.02562 * 19 18 17 21 21 C 1.38770 * 120.04384 * 179.97438 * 20 19 18 22 22 C 1.38125 * 119.99625 * 180.02562 * 21 20 19 23 23 C 1.38248 * 120.08325 * 359.97438 * 22 21 20 24 24 C 1.38475 * 120.08319 * 0.02562 * 23 22 21 25 25 F 1.35104 * 119.99849 * 179.72310 * 24 23 22 26 26 C 1.38383 * 120.00608 * 359.97438 * 24 23 22 27 27 C 1.47423 * 108.70378 * 1.28957 * 13 12 11 28 28 H 0.97004 * 119.99502 * 359.97438 * 1 2 3 29 29 H 0.96703 * 113.99800 * 56.11540 * 10 9 7 30 30 H 1.08996 * 110.71977 * 88.02345 * 11 9 7 31 31 H 1.08997 * 110.87214 * 324.81761 * 11 9 7 32 32 H 1.09003 * 109.88301 * 262.77352 * 12 11 9 33 33 H 1.09000 * 109.88590 * 141.61335 * 12 11 9 34 34 H 0.97003 * 119.99792 * 359.97438 * 16 14 13 35 35 H 1.09003 * 109.47475 * 60.00194 * 17 16 14 36 36 H 1.08999 * 109.47504 * 299.99851 * 17 16 14 37 37 H 1.08997 * 109.47213 * 305.00300 * 18 17 16 38 38 H 1.09002 * 109.46714 * 184.99815 * 18 17 16 39 39 H 1.08001 * 120.00162 * 0.02562 * 21 20 19 40 40 H 1.08009 * 119.95881 * 179.97438 * 22 21 20 41 41 H 1.08004 * 119.96068 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.04140 * 179.97438 * 26 24 23 43 43 H 1.09001 * 110.36934 * 94.48207 * 27 13 12 44 44 H 1.09000 * 110.36415 * 216.80563 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 0.3522 -2.5675 1.1105 11 6 2.2274 -3.7050 0.0015 12 6 1.3972 -4.8217 -0.6659 13 7 0.3452 -4.1691 -1.4588 14 6 -0.6020 -4.8017 -2.1792 15 8 -1.4254 -4.1574 -2.7998 16 7 -0.6365 -6.1487 -2.2118 17 6 -1.6664 -6.8363 -2.9944 18 6 -1.4817 -8.3495 -2.8626 19 8 -1.7120 -8.7413 -1.5078 20 6 -1.5869 -10.0630 -1.2180 21 6 -1.7960 -10.5130 0.0780 22 6 -1.6680 -11.8566 0.3715 23 6 -1.3322 -12.7546 -0.6245 24 6 -1.1228 -12.3093 -1.9189 25 9 -0.7892 -13.1876 -2.8898 26 6 -1.2500 -10.9639 -2.2169 27 6 0.5019 -2.7080 -1.3406 28 1 -0.4849 0.8401 0.0004 29 1 -0.2773 -1.8346 1.1522 30 1 2.4982 -3.9822 1.0203 31 1 3.1183 -3.4833 -0.5861 32 1 0.9464 -5.4554 0.0980 33 1 2.0353 -5.4194 -1.3169 34 1 0.0206 -6.6628 -1.7169 35 1 -1.5782 -6.5499 -4.0424 36 1 -2.6523 -6.5566 -2.6230 37 1 -0.4653 -8.6179 -3.1507 38 1 -2.1910 -8.8601 -3.5140 39 1 -2.0588 -9.8127 0.8570 40 1 -1.8305 -12.2061 1.3805 41 1 -1.2331 -13.8049 -0.3929 42 1 -1.0864 -10.6159 -3.2262 43 1 1.0923 -2.3213 -2.1713 44 1 -0.4738 -2.2231 -1.3094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591917930.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:41 Heat of formation + Delta-G solvation = -152.463564 kcal Electronic energy + Delta-G solvation = -28725.212484 eV Core-core repulsion = 24363.656988 eV Total energy + Delta-G solvation = -4361.555496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.95916 -41.38923 -40.97897 -39.16602 -38.37179 -36.06203 -35.82479 -34.14114 -32.20469 -31.70462 -31.20603 -30.01005 -29.40452 -26.93875 -24.97529 -24.04265 -23.53589 -22.70587 -21.44209 -21.07062 -19.68032 -19.32550 -18.87405 -17.87353 -17.50615 -17.18498 -17.07443 -16.92916 -16.73318 -16.71250 -16.31943 -16.16536 -15.63497 -15.32794 -14.99735 -14.82227 -14.76799 -14.60953 -14.14740 -13.81322 -13.64670 -13.48288 -13.34428 -13.20503 -12.95175 -12.85614 -12.51485 -12.46224 -12.29635 -12.22366 -12.18067 -12.09222 -11.93004 -11.34876 -11.21144 -10.64589 -10.34330 -10.21165 -9.95387 -9.31913 -9.29477 -8.24811 -6.41719 0.12485 0.27669 1.41718 1.45130 1.56077 1.67052 2.03472 2.16317 2.38900 2.59757 3.01298 3.08443 3.19624 3.61347 3.81426 3.83765 3.96289 4.02453 4.05573 4.12938 4.19734 4.25816 4.32173 4.35042 4.47137 4.62490 4.70632 4.75594 4.77258 5.00230 5.05795 5.07248 5.10523 5.21163 5.29964 5.36398 5.38858 5.45361 5.46316 5.71750 5.77994 6.02989 6.16481 6.29953 6.65965 7.05335 7.31093 7.40347 7.55985 8.81026 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024584 B = 0.002085 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.655832 B =13427.556426 C =13851.465858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.023 3.977 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.231 3.769 10 O -0.590 6.590 11 C -0.111 4.111 12 C 0.108 3.892 13 N -0.633 5.633 14 C 0.710 3.290 15 O -0.645 6.645 16 N -0.729 5.729 17 C 0.140 3.860 18 C 0.052 3.948 19 O -0.321 6.321 20 C 0.148 3.852 21 C -0.172 4.172 22 C -0.045 4.045 23 C -0.195 4.195 24 C 0.118 3.882 25 F -0.146 7.146 26 C -0.252 4.252 27 C 0.125 3.875 28 H 0.270 0.730 29 H 0.377 0.623 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.408 0.592 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.142 0.858 40 H 0.169 0.831 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.044 0.956 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.531 -25.429 -2.360 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.177 4.177 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.591 4.591 8 H 0.090 0.910 9 C 0.191 3.809 10 O -0.399 6.399 11 C -0.149 4.149 12 C -0.014 4.014 13 N -0.369 5.369 14 C 0.412 3.588 15 O -0.527 6.527 16 N -0.387 5.387 17 C 0.016 3.984 18 C -0.022 4.022 19 O -0.235 6.235 20 C 0.102 3.898 21 C -0.191 4.191 22 C -0.063 4.063 23 C -0.213 4.213 24 C 0.099 3.901 25 F -0.124 7.124 26 C -0.272 4.272 27 C 0.001 3.999 28 H 0.080 0.920 29 H 0.227 0.773 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.245 0.755 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.125 0.875 39 H 0.160 0.840 40 H 0.186 0.814 41 H 0.172 0.828 42 H 0.170 0.830 43 H 0.062 0.938 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.033 -25.333 -2.661 25.494 hybrid contribution 0.060 1.437 -0.468 1.512 sum -0.974 -23.897 -3.129 24.120 Atomic orbital electron populations 1.69704 1.07270 1.28424 1.50492 1.25869 0.95755 1.02994 0.93120 0.85372 0.79183 0.78810 0.77440 1.18613 1.20944 1.20600 1.21869 0.94074 0.91146 1.52043 0.91035 1.19905 0.86242 0.93303 0.81470 1.86049 1.51218 1.52562 1.50111 1.22602 0.97448 0.93386 1.01435 1.22094 0.88962 0.95848 0.94468 1.47833 1.31006 1.08219 1.49848 1.15736 0.80788 0.82594 0.79718 1.90847 1.43491 1.66914 1.51484 1.44896 1.35731 1.03200 1.54823 1.21337 0.91238 0.89088 0.96707 1.23252 1.03903 0.93500 0.81594 1.86177 1.85140 1.21349 1.30828 1.18889 0.94504 0.82495 0.93872 1.20852 1.06360 0.97283 0.94599 1.21163 0.93894 0.90823 1.00432 1.21368 1.06283 1.02600 0.91091 1.17648 0.99618 0.86608 0.86203 1.91493 1.89906 1.68506 1.62512 1.21305 1.11781 0.92506 1.01570 1.22747 0.99613 0.77596 0.99924 0.92041 0.77263 0.89745 0.89107 0.91254 0.89145 0.75537 0.88650 0.92160 0.89055 0.87519 0.83991 0.81356 0.82815 0.82982 0.93770 0.94462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.56 10.72 21.45 0.23 -50.33 16 2 C 0.02 1.20 5.30 84.65 0.45 1.65 16 3 Si 0.97 41.74 29.54 68.60 2.03 43.77 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.55 -28.65 8.25 25.60 0.21 -28.44 16 8 H 0.07 3.56 7.77 -2.91 -0.02 3.54 16 9 C 0.23 11.24 0.89 -10.07 -0.01 11.24 16 10 O -0.59 -30.99 13.19 -148.98 -1.97 -32.96 16 11 C -0.11 -4.15 6.12 31.78 0.19 -3.95 16 12 C 0.11 3.51 6.15 86.73 0.53 4.04 16 13 N -0.63 -26.09 3.32 -829.32 -2.76 -28.85 16 14 C 0.71 28.76 8.49 179.05 1.52 30.28 16 15 O -0.64 -31.93 16.60 -3.98 -0.07 -31.99 16 16 N -0.73 -20.58 5.46 -478.53 -2.61 -23.19 16 17 C 0.14 3.11 6.06 86.38 0.52 3.64 16 18 C 0.05 0.76 4.87 71.98 0.35 1.11 16 19 O -0.32 -6.15 10.08 -92.32 -0.93 -7.08 16 20 C 0.15 2.56 6.69 22.50 0.15 2.71 16 21 C -0.17 -2.62 9.99 22.37 0.22 -2.40 16 22 C -0.05 -0.51 10.04 22.25 0.22 -0.29 16 23 C -0.19 -2.47 10.02 22.33 0.22 -2.24 16 24 C 0.12 1.91 7.30 22.36 0.16 2.08 16 25 F -0.15 -2.61 17.27 44.97 0.78 -1.83 16 26 C -0.25 -3.94 9.02 22.41 0.20 -3.74 16 27 C 0.13 6.22 5.64 86.93 0.49 6.71 16 28 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.38 21.00 6.93 -74.06 -0.51 20.49 16 30 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.09 3.12 8.02 -2.39 -0.02 3.10 16 32 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.41 9.50 7.46 -92.71 -0.69 8.81 16 35 H 0.10 2.00 8.14 -2.39 -0.02 1.99 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.02 7.66 -2.39 -0.02 1.00 16 38 H 0.11 1.06 7.66 -2.39 -0.02 1.04 16 39 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 41 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 42 H 0.15 1.86 6.30 -2.91 -0.02 1.84 16 43 H 0.04 2.25 8.04 -2.39 -0.02 2.23 16 44 H 0.04 2.15 7.64 -2.39 -0.02 2.13 16 Total: -1.00 -70.47 372.99 -0.01 -70.48 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: -0.16 Total: 39.60 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 5.45 Total: 22.38 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -5.14 Total: -102.37 kcal Atomic # 8 Polarization: -69.07 SS G_CDS: -2.96 Total: -72.03 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.78 Total: -1.83 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -70.47 -0.01 -70.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591917930.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.987 kcal (2) G-P(sol) polarization free energy of solvation -70.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds