Wall clock time and date at job start Tue Mar 31 2020 20:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00145 * 2 1 4 4 H 1.48497 * 109.47136 * 270.00581 * 3 2 1 5 5 H 1.48508 * 109.46834 * 30.00014 * 3 2 1 6 6 H 1.48491 * 109.47253 * 149.99727 * 3 2 1 7 7 C 1.37878 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00324 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00059 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47380 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47231 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47161 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99968 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00360 * 359.73034 * 13 12 11 15 15 C 1.50706 * 120.00081 * 180.02562 * 13 12 11 16 16 H 1.08998 * 109.47012 * 59.72084 * 15 13 12 17 17 C 1.52998 * 109.46708 * 299.72691 * 15 13 12 18 18 O 1.42898 * 109.47603 * 304.99553 * 17 15 13 19 19 N 1.46493 * 109.47128 * 179.72554 * 15 13 12 20 20 C 1.34781 * 120.00043 * 204.99575 * 19 15 13 21 21 O 1.21564 * 119.99641 * 0.02562 * 20 19 15 22 22 C 1.47720 * 120.00242 * 180.02562 * 20 19 15 23 23 C 1.39650 * 120.11589 * 359.72735 * 22 20 19 24 24 C 1.37847 * 119.87785 * 179.74430 * 23 22 20 25 25 C 1.38656 * 120.11492 * 0.50507 * 24 23 22 26 26 F 1.35102 * 119.87508 * 179.74300 * 25 24 23 27 27 C 1.38652 * 120.24352 * 359.77333 * 25 24 23 28 28 C 1.37843 * 120.11389 * 359.97072 * 27 25 24 29 29 H 0.96995 * 120.00404 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47142 * 59.99655 * 9 7 2 31 31 H 1.09010 * 109.47143 * 300.00570 * 9 7 2 32 32 H 1.09004 * 109.46699 * 59.99971 * 10 9 7 33 33 H 1.08993 * 109.47124 * 300.00122 * 10 9 7 34 34 H 1.09004 * 109.47116 * 60.00455 * 11 10 9 35 35 H 1.08998 * 109.47794 * 300.00366 * 11 10 9 36 36 H 0.96998 * 119.99507 * 0.02562 * 12 11 10 37 37 H 1.09004 * 109.47474 * 65.00242 * 17 15 13 38 38 H 1.09000 * 109.47041 * 184.99421 * 17 15 13 39 39 H 0.96703 * 114.00328 * 179.97438 * 18 17 15 40 40 H 0.97001 * 120.00269 * 25.00728 * 19 15 13 41 41 H 1.07996 * 120.06550 * 359.97438 * 23 22 20 42 42 H 1.07997 * 119.93996 * 180.26037 * 24 23 22 43 43 H 1.07996 * 119.94409 * 179.97438 * 27 25 24 44 44 H 1.08000 * 120.05535 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5515 -2.6364 -0.0035 12 7 6.0399 -4.0177 -0.0040 13 6 7.3650 -4.2639 -0.0056 14 8 8.1531 -3.3420 -0.0116 15 6 7.8674 -5.6847 -0.0067 16 1 7.4990 -6.1997 -0.8940 17 6 7.3645 -6.4044 1.2463 18 8 7.7491 -5.6650 2.4070 19 7 9.3323 -5.6846 -0.0150 20 6 10.0035 -6.7431 -0.5107 21 8 9.3932 -7.6976 -0.9514 22 6 11.4807 -6.7433 -0.5186 23 6 12.1842 -5.6456 -0.0182 24 6 13.5627 -5.6532 -0.0231 25 6 14.2505 -6.7437 -0.5333 26 9 15.6015 -6.7438 -0.5404 27 6 13.5570 -7.8337 -1.0366 28 6 12.1786 -7.8386 -1.0317 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6804 0.8888 31 1 3.8746 -0.6799 -0.8912 32 1 3.6579 -3.1497 -0.8925 33 1 3.6587 -3.1509 0.8874 34 1 5.9156 -2.1231 0.8865 35 1 5.9142 -2.1221 -0.8934 36 1 5.4096 -4.7549 -0.0039 37 1 6.2779 -6.4827 1.2089 38 1 7.7993 -7.4029 1.2909 39 1 7.4625 -6.0636 3.2402 40 1 9.8193 -4.9229 0.3364 41 1 11.6494 -4.7939 0.3752 42 1 14.1077 -4.8067 0.3674 43 1 14.0976 -8.6803 -1.4331 44 1 11.6393 -8.6880 -1.4244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593454370.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:34 Heat of formation + Delta-G solvation = -149.594516 kcal Electronic energy + Delta-G solvation = -27876.222010 eV Core-core repulsion = 23514.790925 eV Total energy + Delta-G solvation = -4361.431085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.45873 -40.93499 -39.78404 -38.47109 -37.09807 -35.74312 -34.70915 -33.42891 -32.03468 -31.62182 -31.36284 -29.54094 -27.14229 -24.88307 -23.92606 -23.49402 -22.54895 -20.97621 -20.71431 -20.10325 -18.90025 -18.12426 -17.79164 -17.25839 -16.83356 -16.50487 -16.32769 -16.14906 -15.78484 -15.55012 -15.25144 -15.12694 -14.67696 -14.30768 -14.30382 -14.13085 -13.98726 -13.73070 -13.57639 -13.18794 -12.92686 -12.74369 -12.61979 -12.23233 -11.98803 -11.95009 -11.59005 -11.14231 -10.93360 -10.64960 -10.40795 -10.24569 -10.03591 -9.85714 -9.74377 -9.73172 -9.49561 -9.26954 -9.24700 -8.98901 -8.58728 -6.09410 -4.08412 0.15729 0.66174 2.27272 2.46640 2.54908 3.18241 3.27749 3.28800 3.36553 3.40268 3.62902 3.81128 4.11978 4.20019 4.29509 4.41413 4.46964 4.63197 4.66116 4.73628 4.91279 5.04872 5.17211 5.24602 5.25974 5.34141 5.47974 5.50966 5.59125 5.59483 5.70827 5.90189 5.94805 6.22196 6.23566 6.38532 6.59804 6.72874 7.09299 7.18049 7.24209 7.31619 7.43744 7.72456 7.76053 8.10746 8.46703 8.94166 9.52698 11.03748 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023018 B = 0.001800 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.151099 B =15548.110758 C =16207.325555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.115 3.885 12 N -0.717 5.717 13 C 0.518 3.482 14 O -0.538 6.538 15 C 0.128 3.872 16 H 0.129 0.871 17 C 0.068 3.932 18 O -0.564 6.564 19 N -0.698 5.698 20 C 0.564 3.436 21 O -0.539 6.539 22 C -0.145 4.145 23 C -0.052 4.052 24 C -0.160 4.160 25 C 0.125 3.875 26 F -0.134 7.134 27 C -0.163 4.163 28 C -0.029 4.029 29 H 0.264 0.736 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.400 0.600 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.384 0.616 40 H 0.413 0.587 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.600 -17.951 1.590 32.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.368 5.368 13 C 0.303 3.697 14 O -0.415 6.415 15 C 0.019 3.981 16 H 0.147 0.853 17 C -0.012 4.012 18 O -0.370 6.370 19 N -0.351 5.351 20 C 0.352 3.648 21 O -0.417 6.417 22 C -0.148 4.148 23 C -0.071 4.071 24 C -0.179 4.179 25 C 0.105 3.895 26 F -0.113 7.113 27 C -0.182 4.182 28 C -0.048 4.048 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.234 0.766 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.231 0.769 40 H 0.252 0.748 41 H 0.158 0.842 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 26.858 -17.405 0.825 32.015 hybrid contribution 0.189 0.594 0.566 0.842 sum 27.047 -16.811 1.392 31.876 Atomic orbital electron populations 1.69905 1.06313 1.26991 1.50889 1.25028 0.94749 0.99239 0.94441 0.86778 0.80396 0.83539 0.78597 1.20240 1.21349 1.18911 1.21086 0.89277 0.94517 1.51223 0.90999 1.19503 0.97307 0.91403 0.96684 1.21711 0.90473 1.01154 1.01808 1.21696 0.96231 0.80673 1.02110 1.46024 1.06125 1.10352 1.74267 1.20132 0.83167 0.90109 0.76332 1.90682 1.55259 1.45663 1.49873 1.20966 0.82138 0.95210 0.99753 0.85326 1.22519 0.98859 0.94650 0.85122 1.86529 1.81433 1.52820 1.16201 1.45517 1.05716 1.21101 1.62808 1.18124 0.87080 0.82354 0.77223 1.90787 1.69523 1.34372 1.47048 1.19924 0.92904 0.96710 1.05299 1.21283 0.93497 0.97184 0.95112 1.21130 0.94724 0.98792 1.03255 1.18009 0.76965 0.95630 0.98887 1.91536 1.28920 1.96719 1.94115 1.21160 0.94661 0.98812 1.03562 1.21145 0.92741 0.97293 0.93605 0.92669 0.96280 0.96745 0.92045 0.92016 0.91539 0.91632 0.76570 0.91756 0.91816 0.76878 0.74821 0.84181 0.83820 0.83854 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -14.47 9.66 -34.44 -0.33 -14.81 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.02 5.27 -26.74 -0.14 -2.16 16 11 C 0.12 1.80 5.67 -4.04 -0.02 1.78 16 12 N -0.72 -8.96 5.46 -60.29 -0.33 -9.29 16 13 C 0.52 6.78 6.74 -10.98 -0.07 6.70 16 14 O -0.54 -8.82 15.84 5.56 0.09 -8.73 16 15 C 0.13 1.30 2.78 -69.08 -0.19 1.11 16 16 H 0.13 1.21 7.58 -51.93 -0.39 0.81 16 17 C 0.07 0.56 6.72 37.16 0.25 0.81 16 18 O -0.56 -5.12 13.09 -35.23 -0.46 -5.58 16 19 N -0.70 -7.08 4.85 -55.92 -0.27 -7.35 16 20 C 0.56 5.89 7.73 -12.38 -0.10 5.79 16 21 O -0.54 -6.83 16.01 5.31 0.08 -6.75 16 22 C -0.15 -1.24 5.87 -104.97 -0.62 -1.86 16 23 C -0.05 -0.37 9.54 -39.20 -0.37 -0.75 16 24 C -0.16 -1.07 10.01 -39.57 -0.40 -1.46 16 25 C 0.12 0.91 7.31 -39.27 -0.29 0.62 16 26 F -0.13 -1.08 17.26 2.25 0.04 -1.04 16 27 C -0.16 -1.07 10.01 -39.57 -0.40 -1.46 16 28 C -0.03 -0.22 9.59 -39.20 -0.38 -0.59 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 31 H 0.01 0.32 7.57 -51.92 -0.39 -0.07 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.40 3.90 8.01 -40.82 -0.33 3.57 16 37 H 0.06 0.41 7.72 -51.93 -0.40 0.01 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.38 1.87 9.12 45.56 0.42 2.28 16 40 H 0.41 4.12 5.82 -40.82 -0.24 3.88 16 41 H 0.14 0.84 6.40 -52.49 -0.34 0.50 16 42 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.15 1.02 7.65 -52.49 -0.40 0.62 16 LS Contribution 381.28 15.07 5.75 5.75 Total: -1.00 -35.30 381.28 -7.26 -42.56 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -4.99 Total: 5.10 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -3.26 Total: -4.82 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.17 Total: -43.27 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.29 Total: -21.06 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.30 -7.26 -42.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593454370.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.034 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds