Wall clock time and date at job start Tue Mar 31 2020 20:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00145 * 2 1 4 4 H 1.48497 * 109.47136 * 270.00581 * 3 2 1 5 5 H 1.48508 * 109.46834 * 30.00014 * 3 2 1 6 6 H 1.48491 * 109.47253 * 149.99727 * 3 2 1 7 7 C 1.37878 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00324 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00059 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47380 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47231 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47161 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99968 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00360 * 359.73034 * 13 12 11 15 15 C 1.50706 * 120.00081 * 180.02562 * 13 12 11 16 16 H 1.08998 * 109.47012 * 59.72084 * 15 13 12 17 17 C 1.52998 * 109.46708 * 299.72691 * 15 13 12 18 18 O 1.42898 * 109.47603 * 304.99553 * 17 15 13 19 19 N 1.46493 * 109.47128 * 179.72554 * 15 13 12 20 20 C 1.34781 * 120.00043 * 204.99575 * 19 15 13 21 21 O 1.21564 * 119.99641 * 0.02562 * 20 19 15 22 22 C 1.47720 * 120.00242 * 180.02562 * 20 19 15 23 23 C 1.39650 * 120.11589 * 359.72735 * 22 20 19 24 24 C 1.37847 * 119.87785 * 179.74430 * 23 22 20 25 25 C 1.38656 * 120.11492 * 0.50507 * 24 23 22 26 26 F 1.35102 * 119.87508 * 179.74300 * 25 24 23 27 27 C 1.38652 * 120.24352 * 359.77333 * 25 24 23 28 28 C 1.37843 * 120.11389 * 359.97072 * 27 25 24 29 29 H 0.96995 * 120.00404 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47142 * 59.99655 * 9 7 2 31 31 H 1.09010 * 109.47143 * 300.00570 * 9 7 2 32 32 H 1.09004 * 109.46699 * 59.99971 * 10 9 7 33 33 H 1.08993 * 109.47124 * 300.00122 * 10 9 7 34 34 H 1.09004 * 109.47116 * 60.00455 * 11 10 9 35 35 H 1.08998 * 109.47794 * 300.00366 * 11 10 9 36 36 H 0.96998 * 119.99507 * 0.02562 * 12 11 10 37 37 H 1.09004 * 109.47474 * 65.00242 * 17 15 13 38 38 H 1.09000 * 109.47041 * 184.99421 * 17 15 13 39 39 H 0.96703 * 114.00328 * 179.97438 * 18 17 15 40 40 H 0.97001 * 120.00269 * 25.00728 * 19 15 13 41 41 H 1.07996 * 120.06550 * 359.97438 * 23 22 20 42 42 H 1.07997 * 119.93996 * 180.26037 * 24 23 22 43 43 H 1.07996 * 119.94409 * 179.97438 * 27 25 24 44 44 H 1.08000 * 120.05535 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5515 -2.6364 -0.0035 12 7 6.0399 -4.0177 -0.0040 13 6 7.3650 -4.2639 -0.0056 14 8 8.1531 -3.3420 -0.0116 15 6 7.8674 -5.6847 -0.0067 16 1 7.4990 -6.1997 -0.8940 17 6 7.3645 -6.4044 1.2463 18 8 7.7491 -5.6650 2.4070 19 7 9.3323 -5.6846 -0.0150 20 6 10.0035 -6.7431 -0.5107 21 8 9.3932 -7.6976 -0.9514 22 6 11.4807 -6.7433 -0.5186 23 6 12.1842 -5.6456 -0.0182 24 6 13.5627 -5.6532 -0.0231 25 6 14.2505 -6.7437 -0.5333 26 9 15.6015 -6.7438 -0.5404 27 6 13.5570 -7.8337 -1.0366 28 6 12.1786 -7.8386 -1.0317 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6804 0.8888 31 1 3.8746 -0.6799 -0.8912 32 1 3.6579 -3.1497 -0.8925 33 1 3.6587 -3.1509 0.8874 34 1 5.9156 -2.1231 0.8865 35 1 5.9142 -2.1221 -0.8934 36 1 5.4096 -4.7549 -0.0039 37 1 6.2779 -6.4827 1.2089 38 1 7.7993 -7.4029 1.2909 39 1 7.4625 -6.0636 3.2402 40 1 9.8193 -4.9229 0.3364 41 1 11.6494 -4.7939 0.3752 42 1 14.1077 -4.8067 0.3674 43 1 14.0976 -8.6803 -1.4331 44 1 11.6393 -8.6880 -1.4244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593454370.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:33 Heat of formation + Delta-G solvation = -177.056376 kcal Electronic energy + Delta-G solvation = -27877.412845 eV Core-core repulsion = 23514.790925 eV Total energy + Delta-G solvation = -4362.621920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.03882 -41.75439 -40.66558 -39.18072 -37.82301 -37.06061 -35.56572 -35.16677 -33.43152 -32.45326 -32.10280 -30.42992 -28.69660 -25.66727 -25.00169 -24.15463 -23.68357 -22.24919 -21.66227 -21.21826 -19.71232 -18.96651 -18.74853 -18.42378 -17.90178 -17.45809 -17.14825 -16.81424 -16.71816 -16.48263 -16.24585 -16.18232 -15.81145 -15.54403 -15.21301 -14.92053 -14.77756 -14.66881 -14.60238 -14.23974 -13.91538 -13.80537 -13.80358 -13.47052 -13.25441 -12.88162 -12.73470 -12.68201 -12.10745 -11.93513 -11.78506 -11.58776 -11.35779 -11.31653 -11.22316 -10.84448 -10.75506 -10.36153 -10.25282 -10.12477 -9.85232 -8.28644 -6.32435 -0.44747 0.14350 1.37426 1.39135 1.47894 1.50589 1.56876 1.70158 2.27922 2.36829 2.62511 3.07275 3.08051 3.19943 3.46294 3.58089 3.64999 3.80972 3.94048 4.09544 4.13004 4.19522 4.22064 4.30520 4.40130 4.50922 4.54909 4.71126 4.84356 4.89820 4.90793 4.98476 5.03790 5.04911 5.13014 5.17688 5.34748 5.50054 5.57186 5.65942 5.69212 6.28156 6.31849 6.44472 6.75939 6.81444 6.97591 7.10609 7.32464 8.87638 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023018 B = 0.001800 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.151099 B =15548.110758 C =16207.325555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.013 4.013 10 C -0.101 4.101 11 C 0.129 3.871 12 N -0.708 5.708 13 C 0.520 3.480 14 O -0.573 6.573 15 C 0.129 3.871 16 H 0.138 0.862 17 C 0.072 3.928 18 O -0.584 6.584 19 N -0.697 5.697 20 C 0.566 3.434 21 O -0.566 6.566 22 C -0.160 4.160 23 C -0.052 4.052 24 C -0.159 4.159 25 C 0.116 3.884 26 F -0.139 7.139 27 C -0.158 4.158 28 C -0.033 4.033 29 H 0.266 0.734 30 H 0.021 0.979 31 H 0.019 0.981 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.415 0.585 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.401 0.599 40 H 0.414 0.586 41 H 0.150 0.850 42 H 0.162 0.838 43 H 0.164 0.836 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.586 -18.143 1.832 33.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.170 1.170 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.051 4.051 10 C -0.139 4.139 11 C 0.005 3.995 12 N -0.359 5.359 13 C 0.305 3.695 14 O -0.452 6.452 15 C 0.020 3.980 16 H 0.156 0.844 17 C -0.007 4.007 18 O -0.393 6.393 19 N -0.350 5.350 20 C 0.355 3.645 21 O -0.446 6.446 22 C -0.163 4.163 23 C -0.070 4.070 24 C -0.178 4.178 25 C 0.097 3.903 26 F -0.118 7.118 27 C -0.177 4.177 28 C -0.052 4.052 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.252 0.748 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.251 0.749 40 H 0.253 0.747 41 H 0.167 0.833 42 H 0.179 0.821 43 H 0.181 0.819 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 28.844 -17.633 1.085 33.824 hybrid contribution -0.449 0.581 0.502 0.890 sum 28.395 -17.052 1.587 33.160 Atomic orbital electron populations 1.70054 1.08214 1.28092 1.52721 1.25982 0.95579 1.03421 0.94282 0.85711 0.79562 0.78572 0.79138 1.19330 1.21144 1.17032 1.21474 0.91952 0.93237 1.50162 0.94359 1.19472 0.94020 0.94778 0.96813 1.21483 0.91981 0.98085 1.02316 1.21317 0.94360 0.82272 1.01516 1.45817 1.06518 1.09652 1.73956 1.20577 0.82750 0.90961 0.75182 1.90666 1.56094 1.47017 1.51426 1.21051 0.82261 0.93254 1.01394 0.84441 1.22521 1.00079 0.94102 0.84020 1.86483 1.81917 1.53586 1.17322 1.45545 1.05786 1.21076 1.62580 1.18368 0.87782 0.81865 0.76523 1.90766 1.70193 1.35274 1.48376 1.19921 0.91948 0.97785 1.06646 1.21375 0.93750 0.97054 0.94841 1.21333 0.94562 0.99192 1.02697 1.18194 0.76836 0.96129 0.99178 1.91526 1.29278 1.96768 1.94183 1.21343 0.94286 0.99229 1.02833 1.21230 0.93169 0.97180 0.93638 0.92557 0.96064 0.96245 0.91609 0.91540 0.92293 0.92213 0.74792 0.89535 0.91470 0.74868 0.74746 0.83270 0.82067 0.81855 0.83165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 2 C 0.00 0.24 5.47 84.66 0.46 0.71 16 3 Si 0.95 43.74 27.47 68.60 1.88 45.63 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 7 C -0.53 -29.52 9.66 25.60 0.25 -29.28 16 8 H 0.04 2.32 7.99 -2.91 -0.02 2.29 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.10 -3.43 5.27 30.59 0.16 -3.27 16 11 C 0.13 3.80 5.67 86.38 0.49 4.29 16 12 N -0.71 -16.32 5.46 -463.05 -2.53 -18.85 16 13 C 0.52 12.80 6.74 87.66 0.59 13.39 16 14 O -0.57 -18.19 15.84 -3.04 -0.05 -18.24 16 15 C 0.13 2.43 2.78 44.25 0.12 2.55 16 16 H 0.14 2.35 7.58 -2.39 -0.02 2.34 16 17 C 0.07 1.03 6.72 71.98 0.48 1.52 16 18 O -0.58 -9.51 13.09 -148.98 -1.95 -11.46 16 19 N -0.70 -13.45 4.85 -449.10 -2.18 -15.63 16 20 C 0.57 11.37 7.73 86.75 0.67 12.04 16 21 O -0.57 -13.96 16.01 -3.92 -0.06 -14.02 16 22 C -0.16 -2.60 5.87 -20.09 -0.12 -2.72 16 23 C -0.05 -0.68 9.54 22.52 0.21 -0.46 16 24 C -0.16 -1.88 10.01 22.28 0.22 -1.65 16 25 C 0.12 1.52 7.31 22.47 0.16 1.69 16 26 F -0.14 -2.03 17.26 44.97 0.78 -1.25 16 27 C -0.16 -1.84 10.01 22.28 0.22 -1.62 16 28 C -0.03 -0.47 9.59 22.52 0.22 -0.25 16 29 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 30 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 31 H 0.02 0.84 7.57 -2.38 -0.02 0.82 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.42 7.09 8.01 -92.71 -0.74 6.35 16 37 H 0.09 0.85 7.72 -2.38 -0.02 0.83 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.40 3.11 9.12 -74.06 -0.68 2.43 16 40 H 0.41 7.90 5.82 -92.71 -0.54 7.36 16 41 H 0.15 1.62 6.40 -2.91 -0.02 1.60 16 42 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 43 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.15 1.98 7.65 -2.91 -0.02 1.96 16 Total: -1.00 -76.04 381.28 -0.48 -76.52 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -0.94 Total: 19.26 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 4.27 Total: -3.51 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -4.41 Total: -92.92 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -2.06 Total: -43.72 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.78 Total: -1.25 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.63 kcal Total: -76.04 -0.48 -76.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593454370.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.539 kcal (2) G-P(sol) polarization free energy of solvation -76.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds