Wall clock time and date at job start Tue Mar 31 2020 21:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00256 * 2 1 4 4 C 1.50700 * 109.47112 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99958 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99971 * 180.02562 * 4 3 2 7 7 C 1.46505 * 120.00141 * 359.97438 * 6 4 3 8 8 C 1.46499 * 120.00253 * 180.02562 * 6 4 3 9 9 C 1.50700 * 109.47184 * 269.99860 * 8 6 4 10 10 O 1.21284 * 119.99752 * 0.02562 * 9 8 6 11 11 N 1.34774 * 120.00475 * 179.97438 * 9 8 6 12 12 C 1.37130 * 119.99826 * 359.97438 * 11 9 8 13 13 H 1.08004 * 119.99603 * 359.97438 * 12 11 9 14 14 C 1.38878 * 120.00040 * 179.97438 * 12 11 9 15 15 N 1.31425 * 119.99901 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99984 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47074 * 59.99856 * 16 14 12 18 18 H 1.48497 * 109.47025 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46725 * 300.00089 * 16 14 12 20 20 C 1.39834 * 120.00239 * 180.02562 * 11 9 8 21 21 C 1.38983 * 120.04679 * 269.72384 * 20 11 9 22 22 C 1.38042 * 119.94300 * 180.27916 * 21 20 11 23 23 C 1.38542 * 120.05599 * 359.97438 * 22 21 20 24 24 F 1.35101 * 119.95021 * 180.02562 * 23 22 21 25 25 C 1.38498 * 120.10074 * 0.02562 * 23 22 21 26 26 C 1.38076 * 120.05575 * 0.02562 * 25 23 22 27 27 C 1.50700 * 120.03072 * 179.97438 * 26 25 23 28 28 H 1.09004 * 109.46578 * 60.00185 * 1 2 3 29 29 H 1.08996 * 109.47232 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47080 * 300.00463 * 1 2 3 31 31 H 1.08992 * 109.47402 * 59.99713 * 3 2 1 32 32 H 1.09004 * 109.47134 * 299.99473 * 3 2 1 33 33 H 1.08995 * 109.47103 * 270.00549 * 7 6 4 34 34 H 1.08997 * 109.46621 * 30.00525 * 7 6 4 35 35 H 1.09001 * 109.47063 * 150.00195 * 7 6 4 36 36 H 1.08994 * 109.47560 * 149.99479 * 8 6 4 37 37 H 1.09009 * 109.47303 * 29.99665 * 8 6 4 38 38 H 0.97009 * 119.99809 * 180.02562 * 15 14 12 39 39 H 1.07998 * 120.02809 * 0.24967 * 21 20 11 40 40 H 1.08010 * 119.97214 * 180.02562 * 22 21 20 41 41 H 1.08002 * 119.96864 * 180.02562 * 25 23 22 42 42 H 1.08997 * 109.47459 * 270.02423 * 27 26 25 43 43 H 1.09007 * 109.46750 * 30.01996 * 27 26 25 44 44 H 1.09000 * 109.47621 * 150.01643 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0914 0.0015 6 7 4.2766 2.2967 0.0013 7 6 3.6466 3.6194 0.0008 8 6 5.7370 2.1810 0.0013 9 6 6.2376 2.1406 1.4221 10 8 5.4518 2.2019 2.3439 11 7 7.5585 2.0354 1.6686 12 6 8.4468 1.9645 0.6263 13 1 8.0879 1.9926 -0.3920 14 6 9.8080 1.8565 0.8802 15 7 10.2446 1.8229 2.1193 16 14 11.0182 1.7607 -0.5396 17 1 10.9043 2.9860 -1.3707 18 1 12.3996 1.6517 -0.0059 19 1 10.7125 0.5686 -1.3708 20 6 8.0230 1.9974 2.9869 21 6 8.3550 3.1773 3.6421 22 6 8.8187 3.1368 4.9416 23 6 8.9529 1.9215 5.5930 24 9 9.4065 1.8844 6.8650 25 6 8.6226 0.7444 4.9421 26 6 8.1593 0.7797 3.6419 27 6 7.8007 -0.5015 2.9340 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6887 1.8464 0.8899 32 1 1.6888 1.8464 -0.8901 33 1 3.4911 3.9473 -1.0270 34 1 2.6865 3.5646 0.5139 35 1 4.2935 4.3301 0.5151 36 1 6.1695 3.0396 -0.5121 37 1 6.0290 1.2653 -0.5130 38 1 11.1954 1.7478 2.2966 39 1 8.2506 4.1250 3.1347 40 1 9.0765 4.0536 5.4513 41 1 8.7276 -0.2018 5.4521 42 1 8.6788 -0.8895 2.4179 43 1 7.4541 -1.2344 3.6627 44 1 7.0097 -0.3073 2.2097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602387907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:58 Heat of formation + Delta-G solvation = -104.501333 kcal Electronic energy + Delta-G solvation = -30409.184825 eV Core-core repulsion = 26049.709127 eV Total energy + Delta-G solvation = -4359.475698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.02971 -40.02265 -39.25927 -37.63814 -36.97411 -35.13305 -34.61557 -31.80543 -31.61564 -30.09334 -28.79810 -27.61015 -26.39139 -26.13936 -25.23320 -24.69251 -21.92441 -20.86483 -19.73227 -19.04315 -17.81020 -17.16514 -16.77758 -16.48451 -16.25810 -16.08242 -15.70963 -15.24709 -14.89952 -14.74145 -14.68143 -14.34728 -14.13504 -13.76295 -13.32841 -13.07035 -12.82599 -12.71250 -12.66690 -12.47698 -12.37484 -12.26635 -12.14329 -11.95443 -11.54054 -11.52990 -11.29664 -11.15382 -11.04821 -10.72974 -10.53019 -10.49532 -10.27081 -9.86845 -9.52314 -9.48600 -9.13861 -8.17674 -8.14146 -7.84482 -7.60139 -6.14616 -4.10158 2.28842 2.34131 2.78469 2.96807 3.04949 3.14107 3.15566 3.64010 3.90458 3.99609 4.56286 4.67948 4.69803 4.97451 4.99801 5.06135 5.18830 5.20273 5.20811 5.29389 5.47400 5.51257 5.66411 5.70728 5.73390 5.77540 5.93122 6.04545 6.07637 6.32274 6.44466 6.55386 6.59928 6.65850 6.80075 6.92973 7.05087 7.12658 7.18505 7.28853 7.49391 7.58622 7.68451 7.88816 8.31258 8.45689 8.90541 9.24988 9.67151 10.54162 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.004029 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.839396 B = 6948.061955 C = 8291.454724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.048 3.952 4 C 0.518 3.482 5 O -0.516 6.516 6 N -0.596 5.596 7 C 0.083 3.917 8 C 0.117 3.883 9 C 0.450 3.550 10 O -0.586 6.586 11 N -0.414 5.414 12 C -0.346 4.346 13 H 0.105 0.895 14 C 0.040 3.960 15 N -0.853 5.853 16 Si 0.926 3.074 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.257 3.743 21 C -0.072 4.072 22 C -0.152 4.152 23 C 0.064 3.936 24 F -0.160 7.160 25 C -0.149 4.149 26 C -0.038 4.038 27 C -0.096 4.096 28 H 0.041 0.959 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.274 0.726 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.068 0.932 43 H 0.048 0.952 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.524 3.666 -4.424 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.032 4.032 4 C 0.304 3.696 5 O -0.390 6.390 6 N -0.331 5.331 7 C -0.061 4.061 8 C -0.009 4.009 9 C 0.239 3.761 10 O -0.470 6.470 11 N -0.132 5.132 12 C -0.471 4.471 13 H 0.123 0.877 14 C -0.166 4.166 15 N -0.489 5.489 16 Si 0.752 3.248 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.197 1.197 20 C 0.166 3.834 21 C -0.092 4.092 22 C -0.172 4.172 23 C 0.044 3.956 24 F -0.139 7.139 25 C -0.169 4.169 26 C -0.040 4.040 27 C -0.153 4.153 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.086 0.914 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.286 2.905 -3.851 11.361 hybrid contribution 0.938 0.400 -0.433 1.108 sum -9.348 3.305 -4.285 10.801 Atomic orbital electron populations 1.22811 0.80768 1.03120 0.99920 1.88032 1.19445 1.25549 1.95363 1.22268 0.92157 0.86594 1.02175 1.20077 0.88402 0.84352 0.76747 1.90724 1.74356 1.26164 1.47734 1.47333 1.06158 1.05995 1.73620 1.21774 0.98806 0.84394 1.01094 1.21172 0.78569 1.04974 0.96150 1.20433 0.81917 0.82566 0.91186 1.90585 1.54982 1.55599 1.45809 1.41352 1.04749 1.63247 1.03824 1.19671 0.87207 1.53111 0.87156 0.87695 1.25244 0.97874 0.96031 0.97462 1.69845 1.15724 1.45877 1.17462 0.85997 0.79347 0.79003 0.80434 1.19828 1.20776 1.19713 1.16754 0.91444 0.91635 0.83582 1.20619 0.97894 0.97531 0.93131 1.20533 1.05128 0.95680 0.95822 1.17396 1.03951 0.94851 0.79358 1.91372 1.87536 1.97500 1.37500 1.20466 1.04749 0.96228 0.95416 1.19463 0.97013 0.94933 0.92609 1.20526 1.01576 0.93758 0.99412 0.94021 0.89250 0.93889 0.90208 0.90564 0.92591 0.91454 0.90552 0.88118 0.87488 0.91372 0.87032 0.86633 0.86582 0.91354 0.93316 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.37 -5.41 10.24 -55.14 -0.56 -5.97 16 3 C 0.05 0.62 4.97 36.01 0.18 0.80 16 4 C 0.52 9.19 7.75 -10.99 -0.09 9.10 16 5 O -0.52 -11.59 16.08 -14.35 -0.23 -11.82 16 6 N -0.60 -9.66 2.36 -182.95 -0.43 -10.09 16 7 C 0.08 0.93 10.24 59.85 0.61 1.54 16 8 C 0.12 2.14 4.26 -5.19 -0.02 2.12 16 9 C 0.45 10.23 6.99 -10.99 -0.08 10.16 16 10 O -0.59 -14.83 16.40 5.55 0.09 -14.74 16 11 N -0.41 -9.79 1.80 -58.97 -0.11 -9.89 16 12 C -0.35 -7.98 9.39 -14.94 -0.14 -8.13 16 13 H 0.11 2.21 6.30 -52.48 -0.33 1.88 16 14 C 0.04 0.94 5.45 -17.49 -0.10 0.84 16 15 N -0.85 -20.88 9.31 55.49 0.52 -20.36 16 16 Si 0.93 18.46 29.55 -169.99 -5.02 13.43 16 17 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 C 0.26 6.19 2.20 -83.67 -0.18 6.01 16 21 C -0.07 -1.64 9.05 -39.38 -0.36 -2.00 16 22 C -0.15 -3.21 10.02 -39.54 -0.40 -3.61 16 23 C 0.06 1.37 7.30 -39.37 -0.29 1.08 16 24 F -0.16 -3.25 17.27 2.25 0.04 -3.21 16 25 C -0.15 -3.24 9.67 -39.54 -0.38 -3.63 16 26 C -0.04 -0.90 5.00 -104.42 -0.52 -1.42 16 27 C -0.10 -2.11 9.77 36.01 0.35 -1.76 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.90 7.40 -51.93 -0.38 0.52 16 32 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.63 6.44 -51.93 -0.33 0.30 16 35 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 36 H 0.10 1.57 7.84 -51.93 -0.41 1.16 16 37 H 0.11 2.08 7.18 -51.92 -0.37 1.70 16 38 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 39 H 0.11 2.45 8.06 -52.49 -0.42 2.02 16 40 H 0.12 2.12 8.06 -52.48 -0.42 1.69 16 41 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 42 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.05 0.94 8.09 -51.92 -0.42 0.52 16 44 H 0.06 1.55 6.90 -51.93 -0.36 1.19 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -32.41 376.90 -6.29 -38.70 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.96 Total: 5.76 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: -0.29 Total: 12.51 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -0.02 Total: -40.35 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.70 Total: -32.53 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.04 Total: -3.21 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.43 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.41 -6.29 -38.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602387907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.802 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds