Wall clock time and date at job start Tue Mar 31 2020 21:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00256 * 2 1 4 4 C 1.50700 * 109.47112 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99958 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99971 * 180.02562 * 4 3 2 7 7 C 1.46505 * 120.00141 * 359.97438 * 6 4 3 8 8 C 1.46499 * 120.00253 * 180.02562 * 6 4 3 9 9 C 1.50700 * 109.47184 * 269.99860 * 8 6 4 10 10 O 1.21284 * 119.99752 * 0.02562 * 9 8 6 11 11 N 1.34774 * 120.00475 * 179.97438 * 9 8 6 12 12 C 1.37130 * 119.99826 * 359.97438 * 11 9 8 13 13 H 1.08004 * 119.99603 * 359.97438 * 12 11 9 14 14 C 1.38878 * 120.00040 * 179.97438 * 12 11 9 15 15 N 1.31425 * 119.99901 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99984 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47074 * 59.99856 * 16 14 12 18 18 H 1.48497 * 109.47025 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46725 * 300.00089 * 16 14 12 20 20 C 1.39834 * 120.00239 * 180.02562 * 11 9 8 21 21 C 1.38983 * 120.04679 * 269.72384 * 20 11 9 22 22 C 1.38042 * 119.94300 * 180.27916 * 21 20 11 23 23 C 1.38542 * 120.05599 * 359.97438 * 22 21 20 24 24 F 1.35101 * 119.95021 * 180.02562 * 23 22 21 25 25 C 1.38498 * 120.10074 * 0.02562 * 23 22 21 26 26 C 1.38076 * 120.05575 * 0.02562 * 25 23 22 27 27 C 1.50700 * 120.03072 * 179.97438 * 26 25 23 28 28 H 1.09004 * 109.46578 * 60.00185 * 1 2 3 29 29 H 1.08996 * 109.47232 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47080 * 300.00463 * 1 2 3 31 31 H 1.08992 * 109.47402 * 59.99713 * 3 2 1 32 32 H 1.09004 * 109.47134 * 299.99473 * 3 2 1 33 33 H 1.08995 * 109.47103 * 270.00549 * 7 6 4 34 34 H 1.08997 * 109.46621 * 30.00525 * 7 6 4 35 35 H 1.09001 * 109.47063 * 150.00195 * 7 6 4 36 36 H 1.08994 * 109.47560 * 149.99479 * 8 6 4 37 37 H 1.09009 * 109.47303 * 29.99665 * 8 6 4 38 38 H 0.97009 * 119.99809 * 180.02562 * 15 14 12 39 39 H 1.07998 * 120.02809 * 0.24967 * 21 20 11 40 40 H 1.08010 * 119.97214 * 180.02562 * 22 21 20 41 41 H 1.08002 * 119.96864 * 180.02562 * 25 23 22 42 42 H 1.08997 * 109.47459 * 270.02423 * 27 26 25 43 43 H 1.09007 * 109.46750 * 30.01996 * 27 26 25 44 44 H 1.09000 * 109.47621 * 150.01643 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0914 0.0015 6 7 4.2766 2.2967 0.0013 7 6 3.6466 3.6194 0.0008 8 6 5.7370 2.1810 0.0013 9 6 6.2376 2.1406 1.4221 10 8 5.4518 2.2019 2.3439 11 7 7.5585 2.0354 1.6686 12 6 8.4468 1.9645 0.6263 13 1 8.0879 1.9926 -0.3920 14 6 9.8080 1.8565 0.8802 15 7 10.2446 1.8229 2.1193 16 14 11.0182 1.7607 -0.5396 17 1 10.9043 2.9860 -1.3707 18 1 12.3996 1.6517 -0.0059 19 1 10.7125 0.5686 -1.3708 20 6 8.0230 1.9974 2.9869 21 6 8.3550 3.1773 3.6421 22 6 8.8187 3.1368 4.9416 23 6 8.9529 1.9215 5.5930 24 9 9.4065 1.8844 6.8650 25 6 8.6226 0.7444 4.9421 26 6 8.1593 0.7797 3.6419 27 6 7.8007 -0.5015 2.9340 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6887 1.8464 0.8899 32 1 1.6888 1.8464 -0.8901 33 1 3.4911 3.9473 -1.0270 34 1 2.6865 3.5646 0.5139 35 1 4.2935 4.3301 0.5151 36 1 6.1695 3.0396 -0.5121 37 1 6.0290 1.2653 -0.5130 38 1 11.1954 1.7478 2.2966 39 1 8.2506 4.1250 3.1347 40 1 9.0765 4.0536 5.4513 41 1 8.7276 -0.2018 5.4521 42 1 8.6788 -0.8895 2.4179 43 1 7.4541 -1.2344 3.6627 44 1 7.0097 -0.3073 2.2097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602387907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:57 Heat of formation + Delta-G solvation = -123.015306 kcal Electronic energy + Delta-G solvation = -30409.987651 eV Core-core repulsion = 26049.709127 eV Total energy + Delta-G solvation = -4360.278524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.69096 -41.57399 -40.73823 -39.04881 -38.29349 -36.64984 -36.24544 -33.58001 -33.38510 -31.48987 -30.23342 -28.80090 -27.87723 -27.30036 -26.74419 -26.07670 -23.60379 -22.56688 -21.33215 -20.53954 -19.40580 -18.38526 -18.29025 -17.96710 -17.60212 -17.40310 -17.18777 -16.70851 -16.43882 -16.38332 -16.15124 -15.66357 -15.52151 -15.25145 -14.95074 -14.50683 -14.35787 -14.23887 -14.07957 -13.91112 -13.82037 -13.67129 -13.30975 -13.23609 -13.09733 -12.90579 -12.82845 -12.71075 -12.45934 -12.29800 -12.24907 -12.14754 -11.98598 -11.26112 -10.85765 -10.77073 -10.73117 -9.95221 -9.61165 -9.57987 -9.34090 -7.91999 -5.92341 0.55582 0.59724 1.45073 1.48306 1.53222 1.58783 1.80356 1.92022 2.29618 2.85553 2.92865 3.07523 3.22109 3.49327 3.62051 3.97604 4.05705 4.09890 4.20646 4.23653 4.32259 4.33002 4.36823 4.52562 4.55147 4.59638 4.60916 4.72716 4.78320 4.78825 4.87475 4.88087 4.93991 5.06173 5.28894 5.30676 5.38402 5.45220 5.53108 5.73887 5.92707 6.05773 6.15524 6.41292 6.53894 7.10209 7.16674 7.48771 7.90022 8.75249 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.004029 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.839396 B = 6948.061955 C = 8291.454724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.055 3.945 4 C 0.503 3.497 5 O -0.579 6.579 6 N -0.596 5.596 7 C 0.074 3.926 8 C 0.124 3.876 9 C 0.441 3.559 10 O -0.619 6.619 11 N -0.421 5.421 12 C -0.357 4.357 13 H 0.120 0.880 14 C 0.002 3.998 15 N -0.873 5.873 16 Si 0.988 3.012 17 H -0.261 1.261 18 H -0.291 1.291 19 H -0.272 1.272 20 C 0.238 3.762 21 C -0.088 4.088 22 C -0.147 4.147 23 C 0.058 3.942 24 F -0.152 7.152 25 C -0.151 4.151 26 C -0.064 4.064 27 C -0.084 4.084 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.130 0.870 37 H 0.091 0.909 38 H 0.268 0.732 39 H 0.112 0.888 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.465 5.010 -5.277 13.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.024 4.024 4 C 0.292 3.708 5 O -0.458 6.458 6 N -0.329 5.329 7 C -0.067 4.067 8 C -0.003 4.003 9 C 0.231 3.769 10 O -0.506 6.506 11 N -0.138 5.138 12 C -0.483 4.483 13 H 0.138 0.862 14 C -0.201 4.201 15 N -0.510 5.510 16 Si 0.812 3.188 17 H -0.186 1.186 18 H -0.216 1.216 19 H -0.197 1.197 20 C 0.147 3.853 21 C -0.108 4.108 22 C -0.166 4.166 23 C 0.039 3.961 24 F -0.131 7.131 25 C -0.170 4.170 26 C -0.065 4.065 27 C -0.141 4.141 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.138 0.862 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.148 0.852 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.130 0.870 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.258 4.303 -4.717 12.943 hybrid contribution 1.188 0.002 -0.108 1.193 sum -10.070 4.305 -4.825 11.967 Atomic orbital electron populations 1.23048 0.78136 1.04180 1.01746 1.87976 1.22369 1.26828 1.95775 1.22347 0.88379 0.86662 1.04984 1.21126 0.90687 0.83675 0.75360 1.90683 1.75837 1.28545 1.50779 1.47546 1.05198 1.07758 1.72414 1.22131 0.99153 0.81583 1.03842 1.21047 0.80567 1.05374 0.93286 1.21197 0.81439 0.81581 0.92647 1.90537 1.55650 1.57108 1.47297 1.41575 1.05267 1.63004 1.03992 1.20083 0.87452 1.52967 0.87798 0.86213 1.25970 0.99112 0.95626 0.99415 1.69997 1.15352 1.46667 1.18978 0.85044 0.76684 0.79193 0.77845 1.18579 1.21646 1.19740 1.17084 0.91775 0.92352 0.84105 1.20740 0.98755 0.97291 0.94005 1.20809 1.03755 0.96836 0.95245 1.17455 1.03968 0.94931 0.79724 1.91390 1.87393 1.97474 1.36833 1.20708 1.03902 0.97472 0.94965 1.19677 0.98209 0.95109 0.93533 1.20397 1.00333 0.94156 0.99209 0.91564 0.88769 0.92554 0.88300 0.86249 0.88713 0.89257 0.91341 0.85233 0.89074 0.92046 0.86963 0.83837 0.84483 0.91867 0.91044 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -11.72 10.24 -129.94 -1.33 -13.05 16 3 C 0.06 1.32 4.97 71.24 0.35 1.68 16 4 C 0.50 17.74 7.75 87.66 0.68 18.41 16 5 O -0.58 -27.09 16.08 16.01 0.26 -26.83 16 6 N -0.60 -18.77 2.36 -851.14 -2.01 -20.78 16 7 C 0.07 1.46 10.24 127.77 1.31 2.77 16 8 C 0.12 4.55 4.26 85.63 0.36 4.92 16 9 C 0.44 20.50 6.99 87.66 0.61 21.11 16 10 O -0.62 -32.17 16.40 -3.04 -0.05 -32.22 16 11 N -0.42 -20.32 1.80 -458.87 -0.83 -21.14 16 12 C -0.36 -16.64 9.39 84.02 0.79 -15.85 16 13 H 0.12 5.03 6.30 -2.91 -0.02 5.02 16 14 C 0.00 0.11 5.45 84.91 0.46 0.58 16 15 N -0.87 -43.08 9.31 21.65 0.20 -42.88 16 16 Si 0.99 37.65 29.55 68.60 2.03 39.68 16 17 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 18 H -0.29 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 20 C 0.24 11.67 2.20 38.21 0.08 11.75 16 21 C -0.09 -4.05 9.05 22.40 0.20 -3.85 16 22 C -0.15 -6.11 10.02 22.30 0.22 -5.88 16 23 C 0.06 2.46 7.30 22.40 0.16 2.62 16 24 F -0.15 -5.93 17.27 44.97 0.78 -5.16 16 25 C -0.15 -6.53 9.67 22.29 0.22 -6.31 16 26 C -0.06 -3.01 5.00 -19.74 -0.10 -3.11 16 27 C -0.08 -3.80 9.77 71.24 0.70 -3.11 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 1.96 7.40 -2.39 -0.02 1.94 16 32 H 0.12 1.78 8.11 -2.38 -0.02 1.76 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.37 6.44 -2.39 -0.02 1.35 16 35 H 0.07 1.48 8.07 -2.39 -0.02 1.46 16 36 H 0.13 3.91 7.84 -2.39 -0.02 3.89 16 37 H 0.09 3.66 7.18 -2.38 -0.02 3.64 16 38 H 0.27 13.05 8.31 -92.70 -0.77 12.28 16 39 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 40 H 0.14 5.01 8.06 -2.91 -0.02 4.99 16 41 H 0.14 5.18 8.06 -2.91 -0.02 5.15 16 42 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.07 2.80 8.09 -2.38 -0.02 2.78 16 44 H 0.04 1.86 6.90 -2.39 -0.02 1.84 16 Total: -1.00 -73.44 376.90 7.37 -66.06 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 1.02 Total: 28.93 kcal Atomic # 6 Polarization: 20.08 SS G_CDS: 7.31 Total: 27.38 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -2.64 Total: -84.81 kcal Atomic # 8 Polarization: -70.97 SS G_CDS: -1.12 Total: -72.09 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.78 Total: -5.16 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -73.44 7.37 -66.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602387907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.952 kcal (2) G-P(sol) polarization free energy of solvation -73.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds