Wall clock time and date at job start Tue Mar 31 2020 20:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86794 * 119.99999 * 2 1 4 4 H 1.48501 * 109.47718 * 270.00540 * 3 2 1 5 5 H 1.48499 * 109.47288 * 30.01040 * 3 2 1 6 6 H 1.48513 * 109.47011 * 150.00784 * 3 2 1 7 7 C 1.39936 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99953 * 162.59704 * 7 2 1 9 9 C 1.41436 * 119.99932 * 342.59790 * 7 2 1 10 10 C 1.40784 * 120.17906 * 154.91577 * 9 7 2 11 11 C 1.37718 * 120.03902 * 180.02562 * 10 9 7 12 12 C 1.38373 * 120.41347 * 359.73990 * 11 10 9 13 13 C 1.39874 * 120.35408 * 0.51621 * 12 11 10 14 14 C 1.47887 * 120.02112 * 179.76234 * 13 12 11 15 15 O 1.21555 * 120.00035 * 180.02562 * 14 13 12 16 16 N 1.34770 * 120.00244 * 359.72279 * 14 13 12 17 17 C 1.46498 * 120.00253 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47421 * 180.02562 * 17 16 14 19 19 C 1.38357 * 120.52788 * 104.72087 * 18 17 16 20 20 C 1.38877 * 118.64348 * 179.73648 * 19 18 17 21 21 C 1.38094 * 119.44996 * 0.51156 * 20 19 18 22 22 N 1.32354 * 120.32755 * 359.76166 * 21 20 19 23 23 C 1.32104 * 121.97897 * 359.97438 * 22 21 20 24 24 O 1.35670 * 119.67466 * 179.97438 * 23 22 21 25 25 C 1.51494 * 109.60339 * 179.79564 * 21 20 19 26 26 C 1.54334 * 105.20686 * 342.78050 * 25 21 20 27 27 C 1.51250 * 130.59557 * 180.20076 * 20 19 18 28 28 C 1.39035 * 119.95310 * 359.48676 * 13 12 11 29 29 H 0.97007 * 119.99826 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.97631 * 0.03952 * 10 9 7 31 31 H 1.07995 * 119.78766 * 179.97438 * 11 10 9 32 32 H 1.07998 * 119.82068 * 180.27853 * 12 11 10 33 33 H 0.97002 * 119.99977 * 0.02562 * 16 14 13 34 34 H 1.08999 * 109.47240 * 300.00069 * 17 16 14 35 35 H 1.09005 * 109.47169 * 59.99753 * 17 16 14 36 36 H 1.08003 * 120.67442 * 0.02562 * 19 18 17 37 37 H 0.96700 * 114.00423 * 269.97814 * 24 23 22 38 38 H 1.09006 * 110.29215 * 101.70564 * 25 21 20 39 39 H 1.08993 * 110.29475 * 223.84437 * 25 21 20 40 40 H 1.09006 * 110.82218 * 268.12437 * 26 25 21 41 41 H 1.09003 * 110.99794 * 144.65409 * 26 25 21 42 42 H 1.09002 * 110.31634 * 316.33915 * 27 20 19 43 43 H 1.08999 * 110.31279 * 78.41356 * 27 20 19 44 44 H 1.08004 * 120.20436 * 180.23089 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0466 -1.4000 5 1 1.4398 2.6526 0.7002 6 1 3.5400 1.4400 0.6999 7 6 2.0079 -1.2119 -0.0005 8 1 3.0508 -1.2332 -0.2803 9 6 1.3492 -2.4089 0.3653 10 6 1.8187 -3.6485 -0.1092 11 6 1.1749 -4.8122 0.2484 12 6 0.0683 -4.7739 1.0783 13 6 -0.4157 -3.5512 1.5551 14 6 -1.6021 -3.5185 2.4374 15 8 -2.0227 -2.4557 2.8511 16 7 -2.2207 -4.6664 2.7778 17 6 -3.3956 -4.6341 3.6523 18 6 -3.8932 -6.0386 3.8774 19 6 -3.6633 -6.6813 5.0809 20 6 -4.1442 -7.9733 5.2482 21 6 -4.8251 -8.5837 4.2134 22 7 -5.0226 -7.9418 3.0729 23 6 -4.5850 -6.7106 2.8781 24 8 -4.8132 -6.0967 1.6900 25 6 -5.2415 -9.9788 4.6319 26 6 -4.3672 -10.3110 5.8596 27 6 -4.0538 -8.9117 6.4309 28 6 0.2227 -2.3672 1.2036 29 1 -0.4850 0.8401 0.0004 30 1 2.6844 -3.6868 -0.7537 31 1 1.5382 -5.7608 -0.1182 32 1 -0.4266 -5.6927 1.3563 33 1 -1.8875 -5.5142 2.4444 34 1 -3.1244 -4.1874 4.6089 35 1 -4.1809 -4.0406 3.1839 36 1 -3.1250 -6.1864 5.8758 37 1 -4.1172 -6.2386 1.0338 38 1 -6.2968 -9.9926 4.9044 39 1 -5.0486 -10.6883 3.8273 40 1 -3.4520 -10.8201 5.5573 41 1 -4.9209 -10.9098 6.5828 42 1 -3.0493 -8.8920 6.8538 43 1 -4.7880 -8.6375 7.1885 44 1 -0.1453 -1.4212 1.5724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609584683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:53 Heat of formation + Delta-G solvation = -29.625535 kcal Electronic energy + Delta-G solvation = -27684.327332 eV Core-core repulsion = 23758.867717 eV Total energy + Delta-G solvation = -3925.459615 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.24707 -39.23769 -38.18713 -37.05122 -35.65198 -34.70744 -33.76847 -32.69441 -30.48231 -29.50115 -29.23970 -28.12568 -25.91762 -25.17037 -23.69179 -22.40831 -21.50951 -21.07534 -20.81826 -19.61332 -18.61542 -17.84787 -17.40366 -16.44454 -16.30850 -15.61898 -15.37493 -15.14813 -14.82524 -14.67551 -14.39295 -14.06078 -13.74434 -13.38623 -13.25289 -13.20304 -13.08082 -12.68168 -12.66049 -12.51780 -12.39834 -11.90393 -11.75336 -11.66593 -11.62673 -11.31282 -11.17505 -11.08853 -10.78805 -10.52055 -10.11377 -9.97937 -9.72796 -9.53860 -9.23703 -9.13796 -8.77587 -8.67905 -7.66597 -7.55163 -6.82240 -4.44028 0.64816 0.93227 2.17030 2.78749 3.06067 3.06643 3.09163 3.14469 3.36770 3.76237 3.83023 3.90617 4.03192 4.08084 4.50703 4.53209 4.58891 4.61169 4.67577 4.85693 5.08534 5.25012 5.29253 5.36134 5.46225 5.53496 5.54266 5.57915 5.63360 5.73019 5.86896 5.90023 5.96666 6.04744 6.22314 6.23366 6.68367 6.73860 6.95531 6.98009 7.18194 7.32472 7.34685 7.65795 7.69352 7.71766 7.88515 8.03212 8.15389 8.47472 8.77490 8.80236 8.88960 10.12503 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.002277 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.515373 B =12291.459314 C =12610.766085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.211 4.211 11 C -0.097 4.097 12 C -0.219 4.219 13 C -0.127 4.127 14 C 0.566 3.434 15 O -0.543 6.543 16 N -0.734 5.734 17 C 0.173 3.827 18 C -0.166 4.166 19 C -0.033 4.033 20 C -0.164 4.164 21 C 0.144 3.856 22 N -0.500 5.500 23 C 0.333 3.667 24 O -0.474 6.474 25 C -0.071 4.071 26 C -0.119 4.119 27 C -0.077 4.077 28 C -0.092 4.092 29 H 0.285 0.715 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.396 0.604 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.141 0.859 37 H 0.404 0.596 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.870 -17.062 10.771 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.115 4.115 12 C -0.240 4.240 13 C -0.130 4.130 14 C 0.356 3.644 15 O -0.420 6.420 16 N -0.388 5.388 17 C 0.049 3.951 18 C -0.170 4.170 19 C -0.059 4.059 20 C -0.166 4.166 21 C 0.006 3.994 22 N -0.218 5.218 23 C 0.153 3.847 24 O -0.282 6.282 25 C -0.109 4.109 26 C -0.157 4.157 27 C -0.114 4.114 28 C -0.112 4.112 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.231 0.769 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.158 0.842 37 H 0.262 0.738 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.355 -16.258 10.598 21.544 hybrid contribution 1.201 0.646 -0.002 1.363 sum -8.154 -15.613 10.596 20.555 Atomic orbital electron populations 1.69785 1.07576 1.29848 1.33453 1.25971 0.94787 1.01580 0.92314 0.86284 0.80607 0.80486 0.79244 1.19419 1.19929 1.18377 1.19581 0.98054 0.90983 1.40171 0.90065 1.17606 0.91184 0.92483 0.89099 1.21102 1.03486 0.92808 1.05718 1.20429 0.96068 0.96728 0.98306 1.20295 1.01585 0.94489 1.07590 1.19435 0.96491 0.95326 1.01742 1.18857 0.83223 0.82629 0.79653 1.90711 1.66188 1.29972 1.55143 1.45966 1.30726 1.09860 1.52285 1.19900 0.88738 0.90802 0.95664 1.20906 1.01736 0.98606 0.95729 1.20961 0.95778 0.92723 0.96396 1.21448 1.01368 0.95437 0.98335 1.21606 0.93687 0.96416 0.87712 1.66284 1.21144 1.09266 1.25147 1.18773 0.91657 0.86691 0.87538 1.84766 1.50459 1.70511 1.22419 1.21039 1.00740 0.90916 0.98222 1.22317 1.00206 0.96509 0.96621 1.20945 1.02936 0.92585 0.94949 1.21637 0.96402 0.96411 0.96733 0.90379 0.88598 0.88939 0.89498 0.76874 0.90748 0.89907 0.84157 0.73766 0.89116 0.89518 0.90467 0.89789 0.90171 0.89766 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.63 10.97 55.55 0.61 -20.02 16 2 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.66 29.59 -169.99 -5.03 13.63 16 4 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.46 -11.95 9.05 -37.73 -0.34 -12.29 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 9 C 0.10 2.59 5.57 -106.87 -0.59 1.99 16 10 C -0.21 -4.95 9.78 -38.81 -0.38 -5.33 16 11 C -0.10 -2.03 10.01 -39.72 -0.40 -2.43 16 12 C -0.22 -4.49 9.55 -38.92 -0.37 -4.86 16 13 C -0.13 -2.93 5.87 -105.04 -0.62 -3.54 16 14 C 0.57 12.07 7.77 -12.31 -0.10 11.97 16 15 O -0.54 -13.41 16.33 5.32 0.09 -13.32 16 16 N -0.73 -11.75 5.50 -62.41 -0.34 -12.10 16 17 C 0.17 2.45 5.44 -5.19 -0.03 2.43 16 18 C -0.17 -2.04 5.28 -104.34 -0.55 -2.59 16 19 C -0.03 -0.34 9.80 -39.30 -0.39 -0.72 16 20 C -0.16 -1.56 6.16 -104.17 -0.64 -2.20 16 21 C 0.14 1.55 7.32 -82.03 -0.60 0.95 16 22 N -0.50 -6.65 10.38 -9.26 -0.10 -6.75 16 23 C 0.33 4.42 7.72 -17.20 -0.13 4.29 16 24 O -0.47 -6.27 12.92 -18.71 -0.24 -6.51 16 25 C -0.07 -0.51 6.77 -26.79 -0.18 -0.69 16 26 C -0.12 -0.60 7.08 -25.32 -0.18 -0.78 16 27 C -0.08 -0.47 6.77 -26.90 -0.18 -0.66 16 28 C -0.09 -2.42 8.23 -38.44 -0.32 -2.73 16 29 H 0.29 6.91 8.30 -40.82 -0.34 6.57 16 30 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.09 1.46 6.38 -52.49 -0.33 1.12 16 33 H 0.40 5.56 6.48 -40.82 -0.26 5.30 16 34 H 0.07 1.03 8.00 -51.93 -0.42 0.62 16 35 H 0.08 1.29 8.02 -51.93 -0.42 0.88 16 36 H 0.14 1.19 8.05 -52.48 -0.42 0.77 16 37 H 0.40 3.97 9.06 45.56 0.41 4.38 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.13 3.82 5.77 -52.48 -0.30 3.51 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -32.03 373.23 -10.15 -42.18 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -4.67 Total: 12.72 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -6.08 Total: -15.45 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.17 Total: -38.86 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.15 Total: -19.83 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.03 -10.15 -42.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609584683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.550 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds