Wall clock time and date at job start Tue Mar 31 2020 20:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86794 * 119.99999 * 2 1 4 4 H 1.48501 * 109.47718 * 270.00540 * 3 2 1 5 5 H 1.48499 * 109.47288 * 30.01040 * 3 2 1 6 6 H 1.48513 * 109.47011 * 150.00784 * 3 2 1 7 7 C 1.39936 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99953 * 162.59704 * 7 2 1 9 9 C 1.41436 * 119.99932 * 342.59790 * 7 2 1 10 10 C 1.40784 * 120.17906 * 154.91577 * 9 7 2 11 11 C 1.37718 * 120.03902 * 180.02562 * 10 9 7 12 12 C 1.38373 * 120.41347 * 359.73990 * 11 10 9 13 13 C 1.39874 * 120.35408 * 0.51621 * 12 11 10 14 14 C 1.47887 * 120.02112 * 179.76234 * 13 12 11 15 15 O 1.21555 * 120.00035 * 180.02562 * 14 13 12 16 16 N 1.34770 * 120.00244 * 359.72279 * 14 13 12 17 17 C 1.46498 * 120.00253 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47421 * 180.02562 * 17 16 14 19 19 C 1.38357 * 120.52788 * 104.72087 * 18 17 16 20 20 C 1.38877 * 118.64348 * 179.73648 * 19 18 17 21 21 C 1.38094 * 119.44996 * 0.51156 * 20 19 18 22 22 N 1.32354 * 120.32755 * 359.76166 * 21 20 19 23 23 C 1.32104 * 121.97897 * 359.97438 * 22 21 20 24 24 O 1.35670 * 119.67466 * 179.97438 * 23 22 21 25 25 C 1.51494 * 109.60339 * 179.79564 * 21 20 19 26 26 C 1.54334 * 105.20686 * 342.78050 * 25 21 20 27 27 C 1.51250 * 130.59557 * 180.20076 * 20 19 18 28 28 C 1.39035 * 119.95310 * 359.48676 * 13 12 11 29 29 H 0.97007 * 119.99826 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.97631 * 0.03952 * 10 9 7 31 31 H 1.07995 * 119.78766 * 179.97438 * 11 10 9 32 32 H 1.07998 * 119.82068 * 180.27853 * 12 11 10 33 33 H 0.97002 * 119.99977 * 0.02562 * 16 14 13 34 34 H 1.08999 * 109.47240 * 300.00069 * 17 16 14 35 35 H 1.09005 * 109.47169 * 59.99753 * 17 16 14 36 36 H 1.08003 * 120.67442 * 0.02562 * 19 18 17 37 37 H 0.96700 * 114.00423 * 269.97814 * 24 23 22 38 38 H 1.09006 * 110.29215 * 101.70564 * 25 21 20 39 39 H 1.08993 * 110.29475 * 223.84437 * 25 21 20 40 40 H 1.09006 * 110.82218 * 268.12437 * 26 25 21 41 41 H 1.09003 * 110.99794 * 144.65409 * 26 25 21 42 42 H 1.09002 * 110.31634 * 316.33915 * 27 20 19 43 43 H 1.08999 * 110.31279 * 78.41356 * 27 20 19 44 44 H 1.08004 * 120.20436 * 180.23089 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0466 -1.4000 5 1 1.4398 2.6526 0.7002 6 1 3.5400 1.4400 0.6999 7 6 2.0079 -1.2119 -0.0005 8 1 3.0508 -1.2332 -0.2803 9 6 1.3492 -2.4089 0.3653 10 6 1.8187 -3.6485 -0.1092 11 6 1.1749 -4.8122 0.2484 12 6 0.0683 -4.7739 1.0783 13 6 -0.4157 -3.5512 1.5551 14 6 -1.6021 -3.5185 2.4374 15 8 -2.0227 -2.4557 2.8511 16 7 -2.2207 -4.6664 2.7778 17 6 -3.3956 -4.6341 3.6523 18 6 -3.8932 -6.0386 3.8774 19 6 -3.6633 -6.6813 5.0809 20 6 -4.1442 -7.9733 5.2482 21 6 -4.8251 -8.5837 4.2134 22 7 -5.0226 -7.9418 3.0729 23 6 -4.5850 -6.7106 2.8781 24 8 -4.8132 -6.0967 1.6900 25 6 -5.2415 -9.9788 4.6319 26 6 -4.3672 -10.3110 5.8596 27 6 -4.0538 -8.9117 6.4309 28 6 0.2227 -2.3672 1.2036 29 1 -0.4850 0.8401 0.0004 30 1 2.6844 -3.6868 -0.7537 31 1 1.5382 -5.7608 -0.1182 32 1 -0.4266 -5.6927 1.3563 33 1 -1.8875 -5.5142 2.4444 34 1 -3.1244 -4.1874 4.6089 35 1 -4.1809 -4.0406 3.1839 36 1 -3.1250 -6.1864 5.8758 37 1 -4.1172 -6.2386 1.0338 38 1 -6.2968 -9.9926 4.9044 39 1 -5.0486 -10.6883 3.8273 40 1 -3.4520 -10.8201 5.5573 41 1 -4.9209 -10.9098 6.5828 42 1 -3.0493 -8.8920 6.8538 43 1 -4.7880 -8.6375 7.1885 44 1 -0.1453 -1.4212 1.5724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609584683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:52 Heat of formation + Delta-G solvation = -52.499615 kcal Electronic energy + Delta-G solvation = -27685.319226 eV Core-core repulsion = 23758.867717 eV Total energy + Delta-G solvation = -3926.451509 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.10047 -40.85675 -39.11320 -38.77238 -36.63474 -35.87010 -35.55917 -33.80604 -32.10119 -31.29549 -30.29423 -28.76268 -27.37134 -26.66722 -24.51490 -24.00368 -22.82769 -22.30760 -21.59868 -21.26047 -19.57870 -19.53589 -18.35182 -17.95473 -17.31810 -16.99070 -16.77505 -16.45798 -16.14754 -16.08604 -15.59188 -15.22465 -15.08749 -14.88838 -14.41915 -14.27995 -14.10727 -13.99901 -13.78000 -13.74335 -13.45902 -13.21910 -12.95840 -12.78420 -12.72517 -12.57442 -12.55156 -12.20877 -12.06967 -11.94110 -11.77005 -11.52278 -11.07409 -11.04989 -10.68230 -10.41467 -10.22065 -9.56228 -9.47972 -9.39439 -8.67067 -6.38796 -0.22013 0.09500 0.36261 1.00037 1.36212 1.45894 1.52314 2.07296 2.10562 2.19061 2.40238 2.62716 2.78120 3.21053 3.43790 3.64459 3.69196 3.85971 3.89298 4.01635 4.12414 4.21070 4.36725 4.40242 4.44011 4.56716 4.63734 4.82182 4.85736 4.88809 4.90397 4.97226 5.01147 5.08046 5.13331 5.17852 5.23863 5.28944 5.33409 5.36228 5.49363 5.50936 5.84781 5.91030 6.04440 6.27532 6.43621 6.48815 6.64301 6.84391 6.87357 6.93713 7.24934 8.29718 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.002277 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.515373 B =12291.459314 C =12610.766085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.029 3.971 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.497 4.497 8 H 0.084 0.916 9 C 0.067 3.933 10 C -0.216 4.216 11 C -0.095 4.095 12 C -0.196 4.196 13 C -0.136 4.136 14 C 0.564 3.436 15 O -0.586 6.586 16 N -0.707 5.707 17 C 0.179 3.821 18 C -0.173 4.173 19 C -0.033 4.033 20 C -0.160 4.160 21 C 0.130 3.870 22 N -0.527 5.527 23 C 0.317 3.683 24 O -0.491 6.491 25 C -0.073 4.073 26 C -0.110 4.110 27 C -0.076 4.076 28 C -0.130 4.130 29 H 0.286 0.714 30 H 0.108 0.892 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.409 0.591 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.161 0.839 37 H 0.413 0.587 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 -20.443 12.251 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.526 4.526 8 H 0.102 0.898 9 C 0.064 3.936 10 C -0.235 4.235 11 C -0.113 4.113 12 C -0.216 4.216 13 C -0.139 4.139 14 C 0.354 3.646 15 O -0.467 6.467 16 N -0.360 5.360 17 C 0.056 3.944 18 C -0.177 4.177 19 C -0.058 4.058 20 C -0.162 4.162 21 C -0.008 4.008 22 N -0.246 5.246 23 C 0.138 3.862 24 O -0.300 6.300 25 C -0.111 4.111 26 C -0.147 4.147 27 C -0.113 4.113 28 C -0.151 4.151 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.246 0.754 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.178 0.822 37 H 0.273 0.727 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.127 0.873 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.000 -19.712 12.073 24.806 hybrid contribution 0.995 1.387 -0.403 1.754 sum -8.005 -18.325 11.670 23.153 Atomic orbital electron populations 1.69889 1.09239 1.30619 1.35355 1.26860 0.95416 1.04986 0.91362 0.85206 0.79103 0.75785 0.79681 1.18196 1.19778 1.17779 1.19854 0.98428 0.92125 1.42171 0.89759 1.17954 0.91807 0.93952 0.89839 1.21411 1.03880 0.92821 1.05436 1.20915 0.95392 0.97674 0.97333 1.20794 1.00670 0.94969 1.05179 1.19720 0.96869 0.95499 1.01835 1.18712 0.83089 0.83307 0.79458 1.90689 1.67306 1.31881 1.56798 1.45702 1.30328 1.08725 1.51242 1.19865 0.87229 0.92306 0.95033 1.20644 1.02919 0.97423 0.96717 1.21217 0.95457 0.93178 0.95988 1.21879 0.99772 0.95228 0.99313 1.22375 0.93235 0.97934 0.87233 1.66314 1.22055 1.09482 1.26767 1.18896 0.92540 0.87158 0.87633 1.84738 1.51363 1.70866 1.23050 1.21224 1.01799 0.88791 0.99258 1.22354 1.00297 0.96152 0.95940 1.21088 1.04246 0.92137 0.93825 1.21443 0.98234 0.96418 0.99006 0.90312 0.87345 0.84419 0.84898 0.75357 0.90204 0.91725 0.82171 0.72660 0.88099 0.89265 0.89996 0.87302 0.88827 0.88286 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.30 10.97 21.82 0.24 -46.06 16 2 C 0.03 1.50 5.14 85.25 0.44 1.94 16 3 Si 0.98 39.73 29.59 68.60 2.03 41.76 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.50 -27.01 9.05 23.47 0.21 -26.79 16 8 H 0.08 4.31 7.90 -2.91 -0.02 4.29 16 9 C 0.07 3.62 5.57 -21.32 -0.12 3.50 16 10 C -0.22 -9.98 9.78 22.77 0.22 -9.75 16 11 C -0.10 -3.70 10.01 22.18 0.22 -3.48 16 12 C -0.20 -7.52 9.55 22.70 0.22 -7.31 16 13 C -0.14 -6.34 5.87 -20.13 -0.12 -6.46 16 14 C 0.56 24.45 7.77 86.80 0.67 25.12 16 15 O -0.59 -30.31 16.33 -3.89 -0.06 -30.37 16 16 N -0.71 -22.04 5.50 -469.66 -2.58 -24.63 16 17 C 0.18 5.03 5.44 85.63 0.47 5.50 16 18 C -0.17 -4.06 5.28 -19.68 -0.10 -4.17 16 19 C -0.03 -0.61 9.80 22.45 0.22 -0.39 16 20 C -0.16 -2.60 6.16 -19.57 -0.12 -2.72 16 21 C 0.13 2.53 7.32 42.70 0.31 2.84 16 22 N -0.53 -13.51 10.38 -296.14 -3.07 -16.59 16 23 C 0.32 8.23 7.72 84.80 0.65 8.88 16 24 O -0.49 -13.05 12.92 -89.87 -1.16 -14.21 16 25 C -0.07 -0.83 6.77 30.55 0.21 -0.62 16 26 C -0.11 -0.66 7.08 31.51 0.22 -0.44 16 27 C -0.08 -0.63 6.77 30.48 0.21 -0.43 16 28 C -0.13 -7.21 8.23 23.01 0.19 -7.02 16 29 H 0.29 14.83 8.30 -92.70 -0.77 14.06 16 30 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 31 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 32 H 0.13 3.83 6.38 -2.91 -0.02 3.81 16 33 H 0.41 10.53 6.48 -92.71 -0.60 9.93 16 34 H 0.08 2.18 8.00 -2.39 -0.02 2.16 16 35 H 0.06 2.08 8.02 -2.38 -0.02 2.06 16 36 H 0.16 2.25 8.05 -2.91 -0.02 2.23 16 37 H 0.41 8.08 9.06 -74.06 -0.67 7.41 16 38 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 41 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.09 0.59 8.14 -2.39 -0.02 0.58 16 43 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.10 6.09 5.77 -2.91 -0.02 6.08 16 Total: -1.00 -75.15 373.23 -0.81 -75.95 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: -0.20 Total: 35.94 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 4.00 Total: -21.79 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -5.42 Total: -87.28 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -1.22 Total: -44.59 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -75.15 -0.81 -75.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609584683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.455 kcal (2) G-P(sol) polarization free energy of solvation -75.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds