Wall clock time and date at job start Tue Mar 31 2020 21:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38072 * 119.92554 * 2 1 4 4 C 1.38452 * 120.48040 * 180.02562 * 3 2 1 5 5 C 1.38117 * 120.32777 * 0.25921 * 4 3 2 6 6 F 1.35095 * 120.07549 * 179.74571 * 5 4 3 7 7 C 1.40019 * 119.84916 * 359.48824 * 5 4 3 8 8 C 1.47139 * 120.23437 * 180.23115 * 7 5 4 9 9 O 1.21541 * 119.99853 * 270.27841 * 8 7 5 10 10 O 1.34779 * 119.99807 * 90.28118 * 8 7 5 11 11 C 1.45204 * 116.99843 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.46871 * 330.00020 * 11 10 8 13 13 C 1.53004 * 109.46927 * 89.99594 * 11 10 8 14 14 C 1.50694 * 109.47081 * 209.99703 * 11 10 8 15 15 O 1.21281 * 120.00250 * 0.02562 * 14 11 10 16 16 N 1.34781 * 120.00017 * 179.97438 * 14 11 10 17 17 C 1.46509 * 119.99882 * 359.97438 * 16 14 11 18 18 C 1.46494 * 120.00103 * 180.02562 * 16 14 11 19 19 C 1.50698 * 109.47509 * 90.00201 * 18 16 14 20 20 H 1.08002 * 119.99895 * 359.97438 * 19 18 16 21 21 C 1.37874 * 120.00200 * 180.02562 * 19 18 16 22 22 N 1.31509 * 120.00163 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99806 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47095 * 89.99918 * 23 21 19 25 25 H 1.48499 * 109.47092 * 209.99733 * 23 21 19 26 26 H 1.48490 * 109.47334 * 329.99722 * 23 21 19 27 27 C 1.38828 * 119.93085 * 180.02562 * 2 1 3 28 28 N 1.38852 * 120.16745 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.46880 * 90.00179 * 1 2 3 30 30 H 1.08999 * 109.47194 * 209.99497 * 1 2 3 31 31 H 1.08995 * 109.47290 * 329.99958 * 1 2 3 32 32 H 1.07998 * 119.76379 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.83309 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47201 * 299.99918 * 13 11 10 35 35 H 1.08996 * 109.46997 * 60.00503 * 13 11 10 36 36 H 1.09001 * 109.46949 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.46307 * 89.99928 * 17 16 14 38 38 H 1.08991 * 109.46712 * 209.99910 * 17 16 14 39 39 H 1.08998 * 109.47155 * 330.00205 * 17 16 14 40 40 H 1.09009 * 109.47235 * 209.99876 * 18 16 14 41 41 H 1.09002 * 109.47370 * 329.99750 * 18 16 14 42 42 H 0.96998 * 120.00152 * 180.02562 * 22 21 19 43 43 H 0.97001 * 119.99777 * 0.02562 * 28 27 2 44 44 H 0.96995 * 119.99804 * 180.02562 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1966 0.0000 4 6 3.5803 1.2100 -0.0005 5 6 4.2892 0.0247 -0.0065 6 9 5.6400 0.0438 -0.0121 7 6 3.6047 -1.1967 -0.0011 8 6 4.3515 -2.4646 -0.0022 9 8 4.6595 -2.9875 -1.0553 10 8 4.6939 -3.0460 1.1645 11 6 5.4293 -4.2956 1.0874 12 1 5.1463 -4.8282 0.1795 13 6 6.9308 -4.0029 1.0600 14 6 5.1048 -5.1444 2.2896 15 8 4.3297 -4.7365 3.1285 16 7 5.6752 -6.3572 2.4320 17 6 6.6102 -6.8506 1.4177 18 6 5.3594 -7.1826 3.6004 19 6 4.1713 -8.0568 3.2916 20 1 3.6985 -8.0026 2.3221 21 6 3.6873 -8.9249 4.2471 22 7 4.2627 -8.9905 5.4279 23 14 2.2142 -10.0080 3.8646 24 1 2.6819 -11.2948 3.2895 25 1 1.4553 -10.2708 5.1137 26 1 1.3342 -9.3195 2.8865 27 6 2.1997 -1.2031 -0.0005 28 7 1.5075 -2.4068 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 1.6508 2.1290 -0.0004 33 1 4.1085 2.1521 -0.0009 34 1 7.1655 -3.3890 0.1904 35 1 7.2137 -3.4703 1.9679 36 1 7.4828 -4.9409 1.0016 37 1 7.6235 -6.5452 1.6786 38 1 6.5583 -7.9384 1.3743 39 1 6.3444 -6.4351 0.4457 40 1 6.2173 -7.8088 3.8455 41 1 5.1259 -6.5383 4.4480 42 1 3.9225 -9.6015 6.1000 43 1 0.5375 -2.4084 -0.0005 44 1 1.9940 -3.2460 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747268597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:32 Heat of formation + Delta-G solvation = -131.685281 kcal Electronic energy + Delta-G solvation = -29661.095026 eV Core-core repulsion = 25300.440544 eV Total energy + Delta-G solvation = -4360.654482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.16705 -40.88342 -39.67478 -38.77227 -36.35351 -34.98322 -34.96128 -33.07021 -32.74923 -31.50477 -29.74380 -27.70166 -26.83837 -26.29044 -25.13564 -24.03752 -22.49918 -21.94035 -20.72087 -18.92472 -18.37110 -18.22518 -17.76835 -16.89667 -16.56713 -15.98832 -15.89986 -15.80856 -15.54672 -15.38649 -15.29368 -14.66130 -14.55690 -14.19727 -14.13520 -13.61714 -13.52324 -13.32534 -12.92221 -12.51303 -12.46034 -12.43582 -12.25546 -12.13845 -12.12589 -11.81175 -11.66155 -11.40044 -11.17705 -10.95819 -10.94126 -10.73498 -10.67131 -10.59667 -10.20963 -9.69162 -9.06082 -8.91973 -8.48662 -7.94945 -7.76255 -6.09431 -4.14664 0.67448 1.10466 1.92276 2.44342 3.22174 3.25229 3.26595 3.32918 3.33378 3.37657 3.82458 4.01890 4.38441 4.41397 4.52196 4.63040 4.79376 4.82480 4.95891 5.04415 5.07488 5.18980 5.25140 5.29162 5.44425 5.50157 5.58075 5.62097 5.67181 5.75535 5.82256 5.83118 6.00043 6.07843 6.20389 6.29870 6.43726 6.94732 6.97231 7.29378 7.35852 7.42417 7.60045 7.86337 8.16310 8.25336 8.80571 8.95446 9.50408 10.98737 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.003080 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.107828 B = 9088.033858 C =10419.533180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.179 4.179 3 C -0.022 4.022 4 C -0.212 4.212 5 C 0.184 3.816 6 F -0.129 7.129 7 C -0.224 4.224 8 C 0.520 3.480 9 O -0.494 6.494 10 O -0.314 6.314 11 C 0.066 3.934 12 H 0.106 0.894 13 C -0.176 4.176 14 C 0.509 3.491 15 O -0.518 6.518 16 N -0.595 5.595 17 C 0.075 3.925 18 C 0.247 3.753 19 C -0.530 4.530 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.893 5.893 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.284 1.284 26 H -0.275 1.275 27 C 0.293 3.707 28 N -0.853 5.853 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.264 0.736 43 H 0.408 0.592 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.994 18.598 -13.496 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.184 4.184 3 C -0.041 4.041 4 C -0.233 4.233 5 C 0.164 3.836 6 F -0.108 7.108 7 C -0.232 4.232 8 C 0.362 3.638 9 O -0.382 6.382 10 O -0.229 6.229 11 C 0.008 3.992 12 H 0.124 0.876 13 C -0.233 4.233 14 C 0.293 3.707 15 O -0.394 6.394 16 N -0.328 5.328 17 C -0.069 4.069 18 C 0.128 3.872 19 C -0.569 4.569 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.206 1.206 25 H -0.210 1.210 26 H -0.199 1.199 27 C 0.183 3.817 28 N -0.390 5.390 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.240 0.760 44 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.263 18.495 -13.135 22.798 hybrid contribution -0.515 -1.208 -0.263 1.339 sum -2.778 17.287 -13.398 22.047 Atomic orbital electron populations 1.20609 0.90150 1.03058 1.02320 1.19322 0.96519 0.90908 1.11617 1.20761 0.92818 0.97368 0.93181 1.20752 0.94684 0.96529 1.11363 1.17225 0.76565 0.92428 0.97394 1.91533 1.28745 1.97287 1.93188 1.18305 0.92155 0.90406 1.22338 1.20843 0.76324 0.84311 0.82311 1.90858 1.51412 1.63305 1.32595 1.86831 1.66855 1.36351 1.32870 1.22702 0.92825 0.83476 1.00209 0.87645 1.22405 0.92726 1.04481 1.03707 1.19741 0.82098 0.82178 0.86688 1.90712 1.34260 1.71563 1.42850 1.48057 1.43543 1.16113 1.25132 1.21897 0.92461 1.01559 0.90960 1.19357 0.96222 0.89289 0.82323 1.21417 1.14306 1.21232 0.99897 0.92445 1.24933 0.97165 0.97158 0.94783 1.69925 1.41123 1.37594 1.04563 0.86482 0.82545 0.80454 0.77848 1.20573 1.21016 1.19950 1.17058 0.88016 0.87224 0.89408 1.42542 1.09963 1.05221 1.81280 0.91191 0.91822 0.90851 0.84408 0.84132 0.91260 0.90865 0.88765 0.92937 0.90262 0.92289 0.94558 0.93623 0.92619 0.76049 0.76673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 9.56 36.01 0.34 -0.31 16 2 C -0.18 -1.65 5.89 -104.46 -0.62 -2.26 16 3 C -0.02 -0.18 9.67 -39.56 -0.38 -0.56 16 4 C -0.21 -2.03 10.00 -39.55 -0.40 -2.43 16 5 C 0.18 2.37 7.29 -38.96 -0.28 2.09 16 6 F -0.13 -1.79 16.83 2.25 0.04 -1.75 16 7 C -0.22 -3.20 5.77 -104.77 -0.60 -3.81 16 8 C 0.52 8.60 5.75 34.34 0.20 8.79 16 9 O -0.49 -8.67 16.37 -19.30 -0.32 -8.99 16 10 O -0.31 -5.73 9.43 -47.39 -0.45 -6.18 16 11 C 0.07 1.15 2.18 -27.88 -0.06 1.09 16 12 H 0.11 1.72 6.42 -51.93 -0.33 1.39 16 13 C -0.18 -2.46 9.19 37.16 0.34 -2.12 16 14 C 0.51 11.02 7.15 -10.99 -0.08 10.94 16 15 O -0.52 -13.55 16.08 -14.10 -0.23 -13.77 16 16 N -0.59 -12.60 2.86 -182.95 -0.52 -13.12 16 17 C 0.08 1.16 8.80 59.85 0.53 1.69 16 18 C 0.25 6.40 5.16 -5.20 -0.03 6.38 16 19 C -0.53 -14.90 9.39 -34.44 -0.32 -15.23 16 20 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 23 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.29 3.51 6.74 -83.61 -0.56 2.94 16 28 N -0.85 -9.23 8.89 32.55 0.29 -8.94 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.38 6.54 -51.93 -0.34 0.04 16 31 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 33 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.13 4.54 -51.93 -0.24 0.90 16 37 H 0.05 0.68 6.95 -51.93 -0.36 0.32 16 38 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 39 H 0.06 0.78 6.01 -51.93 -0.31 0.46 16 40 H 0.04 0.94 8.07 -51.92 -0.42 0.52 16 41 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.41 3.22 6.80 -40.82 -0.28 2.94 16 44 H 0.40 4.98 7.68 -40.82 -0.31 4.67 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -35.57 375.87 -7.30 -42.87 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.48 Total: 4.33 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -2.02 Total: 8.86 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.50 Total: -47.66 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.99 Total: -28.94 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.57 -7.30 -42.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747268597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.812 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds