Wall clock time and date at job start Tue Mar 31 2020 21:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38072 * 119.92554 * 2 1 4 4 C 1.38452 * 120.48040 * 180.02562 * 3 2 1 5 5 C 1.38117 * 120.32777 * 0.25921 * 4 3 2 6 6 F 1.35095 * 120.07549 * 179.74571 * 5 4 3 7 7 C 1.40019 * 119.84916 * 359.48824 * 5 4 3 8 8 C 1.47139 * 120.23437 * 180.23115 * 7 5 4 9 9 O 1.21541 * 119.99853 * 270.27841 * 8 7 5 10 10 O 1.34779 * 119.99807 * 90.28118 * 8 7 5 11 11 C 1.45204 * 116.99843 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.46871 * 330.00020 * 11 10 8 13 13 C 1.53004 * 109.46927 * 89.99594 * 11 10 8 14 14 C 1.50694 * 109.47081 * 209.99703 * 11 10 8 15 15 O 1.21281 * 120.00250 * 0.02562 * 14 11 10 16 16 N 1.34781 * 120.00017 * 179.97438 * 14 11 10 17 17 C 1.46509 * 119.99882 * 359.97438 * 16 14 11 18 18 C 1.46494 * 120.00103 * 180.02562 * 16 14 11 19 19 C 1.50698 * 109.47509 * 90.00201 * 18 16 14 20 20 H 1.08002 * 119.99895 * 359.97438 * 19 18 16 21 21 C 1.37874 * 120.00200 * 180.02562 * 19 18 16 22 22 N 1.31509 * 120.00163 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99806 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47095 * 89.99918 * 23 21 19 25 25 H 1.48499 * 109.47092 * 209.99733 * 23 21 19 26 26 H 1.48490 * 109.47334 * 329.99722 * 23 21 19 27 27 C 1.38828 * 119.93085 * 180.02562 * 2 1 3 28 28 N 1.38852 * 120.16745 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.46880 * 90.00179 * 1 2 3 30 30 H 1.08999 * 109.47194 * 209.99497 * 1 2 3 31 31 H 1.08995 * 109.47290 * 329.99958 * 1 2 3 32 32 H 1.07998 * 119.76379 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.83309 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47201 * 299.99918 * 13 11 10 35 35 H 1.08996 * 109.46997 * 60.00503 * 13 11 10 36 36 H 1.09001 * 109.46949 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.46307 * 89.99928 * 17 16 14 38 38 H 1.08991 * 109.46712 * 209.99910 * 17 16 14 39 39 H 1.08998 * 109.47155 * 330.00205 * 17 16 14 40 40 H 1.09009 * 109.47235 * 209.99876 * 18 16 14 41 41 H 1.09002 * 109.47370 * 329.99750 * 18 16 14 42 42 H 0.96998 * 120.00152 * 180.02562 * 22 21 19 43 43 H 0.97001 * 119.99777 * 0.02562 * 28 27 2 44 44 H 0.96995 * 119.99804 * 180.02562 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1966 0.0000 4 6 3.5803 1.2100 -0.0005 5 6 4.2892 0.0247 -0.0065 6 9 5.6400 0.0438 -0.0121 7 6 3.6047 -1.1967 -0.0011 8 6 4.3515 -2.4646 -0.0022 9 8 4.6595 -2.9875 -1.0553 10 8 4.6939 -3.0460 1.1645 11 6 5.4293 -4.2956 1.0874 12 1 5.1463 -4.8282 0.1795 13 6 6.9308 -4.0029 1.0600 14 6 5.1048 -5.1444 2.2896 15 8 4.3297 -4.7365 3.1285 16 7 5.6752 -6.3572 2.4320 17 6 6.6102 -6.8506 1.4177 18 6 5.3594 -7.1826 3.6004 19 6 4.1713 -8.0568 3.2916 20 1 3.6985 -8.0026 2.3221 21 6 3.6873 -8.9249 4.2471 22 7 4.2627 -8.9905 5.4279 23 14 2.2142 -10.0080 3.8646 24 1 2.6819 -11.2948 3.2895 25 1 1.4553 -10.2708 5.1137 26 1 1.3342 -9.3195 2.8865 27 6 2.1997 -1.2031 -0.0005 28 7 1.5075 -2.4068 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 1.6508 2.1290 -0.0004 33 1 4.1085 2.1521 -0.0009 34 1 7.1655 -3.3890 0.1904 35 1 7.2137 -3.4703 1.9679 36 1 7.4828 -4.9409 1.0016 37 1 7.6235 -6.5452 1.6786 38 1 6.5583 -7.9384 1.3743 39 1 6.3444 -6.4351 0.4457 40 1 6.2173 -7.8088 3.8455 41 1 5.1259 -6.5383 4.4480 42 1 3.9225 -9.6015 6.1000 43 1 0.5375 -2.4084 -0.0005 44 1 1.9940 -3.2460 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747268597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:31 Heat of formation + Delta-G solvation = -154.612526 kcal Electronic energy + Delta-G solvation = -29662.089226 eV Core-core repulsion = 25300.440544 eV Total energy + Delta-G solvation = -4361.648682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.12528 -42.14363 -40.89487 -40.09727 -37.72599 -36.77996 -35.76423 -34.96659 -33.74772 -32.90264 -30.58379 -29.58828 -27.80420 -27.49892 -26.33826 -25.61243 -24.05051 -22.80772 -21.87767 -20.54763 -19.49169 -19.12959 -18.76639 -18.67351 -18.31533 -17.51308 -17.14066 -17.01246 -16.74384 -16.48078 -16.37426 -16.30554 -15.84370 -15.34143 -14.91958 -14.81656 -14.78636 -14.38071 -14.32222 -14.18806 -13.77252 -13.61234 -13.38534 -13.16378 -13.12294 -13.05495 -12.94713 -12.85229 -12.63905 -12.50614 -12.48285 -12.24297 -12.05327 -11.85664 -11.74727 -11.70969 -10.70178 -10.66985 -9.87006 -9.56668 -8.75201 -8.26005 -6.40968 -0.17523 0.30807 0.67980 1.19037 1.35060 1.37862 1.47533 1.54980 2.24572 2.39044 2.47350 2.51210 3.04038 3.16247 3.30126 3.37672 3.65119 3.72551 3.79219 3.86099 4.15634 4.25165 4.30023 4.44910 4.52297 4.57476 4.62044 4.73045 4.81440 4.87031 4.90106 4.93644 5.02464 5.03180 5.12315 5.17755 5.26855 5.38258 5.47379 5.70880 5.74286 6.00299 6.10294 6.29618 6.53490 6.54754 6.67279 7.14728 7.32096 8.81542 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.003080 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.107828 B = 9088.033858 C =10419.533180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.174 4.174 3 C -0.011 4.011 4 C -0.202 4.202 5 C 0.155 3.845 6 F -0.143 7.143 7 C -0.261 4.261 8 C 0.524 3.476 9 O -0.512 6.512 10 O -0.335 6.335 11 C 0.074 3.926 12 H 0.118 0.882 13 C -0.169 4.169 14 C 0.502 3.498 15 O -0.576 6.576 16 N -0.597 5.597 17 C 0.066 3.934 18 C 0.260 3.740 19 C -0.548 4.548 20 H 0.053 0.947 21 C 0.010 3.990 22 N -0.926 5.926 23 Si 0.969 3.031 24 H -0.262 1.262 25 H -0.280 1.280 26 H -0.274 1.274 27 C 0.276 3.724 28 N -0.854 5.854 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.182 0.818 33 H 0.168 0.832 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.034 0.966 41 H 0.000 1.000 42 H 0.268 0.732 43 H 0.419 0.581 44 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.051 19.865 -15.303 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.179 4.179 3 C -0.030 4.030 4 C -0.223 4.223 5 C 0.135 3.865 6 F -0.122 7.122 7 C -0.269 4.269 8 C 0.368 3.632 9 O -0.400 6.400 10 O -0.251 6.251 11 C 0.016 3.984 12 H 0.136 0.864 13 C -0.225 4.225 14 C 0.289 3.711 15 O -0.456 6.456 16 N -0.329 5.329 17 C -0.076 4.076 18 C 0.139 3.861 19 C -0.586 4.586 20 H 0.071 0.929 21 C -0.190 4.190 22 N -0.566 5.566 23 Si 0.793 3.207 24 H -0.187 1.187 25 H -0.205 1.205 26 H -0.198 1.198 27 C 0.166 3.834 28 N -0.391 5.391 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.199 0.801 33 H 0.185 0.815 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.136 0.864 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.052 0.948 41 H 0.019 0.981 42 H 0.077 0.923 43 H 0.253 0.747 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.294 19.763 -14.987 25.020 hybrid contribution -0.208 -1.524 0.307 1.569 sum -3.502 18.239 -14.680 23.673 Atomic orbital electron populations 1.20721 0.87794 1.04114 1.03547 1.19792 0.98201 0.90171 1.09753 1.21303 0.92303 0.98634 0.90755 1.21159 0.95491 0.96234 1.09384 1.17604 0.76277 0.93212 0.99406 1.91486 1.29744 1.97374 1.93556 1.18492 0.93216 0.89704 1.25465 1.21301 0.75748 0.84726 0.81455 1.90817 1.52300 1.64065 1.32836 1.86840 1.67352 1.36552 1.34324 1.22640 0.94830 0.83143 0.97799 0.86448 1.22424 0.90169 1.05914 1.04033 1.20511 0.80973 0.82342 0.87319 1.90669 1.36828 1.72886 1.45223 1.48027 1.44211 1.15688 1.24957 1.22265 0.92842 1.01733 0.90720 1.18865 0.95654 0.88536 0.83004 1.21682 1.15180 1.21837 0.99917 0.92856 1.25848 1.00089 0.98537 0.94497 1.70040 1.42652 1.38376 1.05491 0.85404 0.78668 0.78924 0.77743 1.18702 1.20526 1.19848 1.17373 0.87471 0.88489 0.90094 1.42558 1.10559 1.04644 1.81354 0.89751 0.91916 0.88706 0.80057 0.81482 0.89929 0.91432 0.86380 0.89606 0.90364 0.89404 0.94781 0.98145 0.92266 0.74667 0.77890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.56 71.24 0.68 -0.30 16 2 C -0.17 -2.82 5.89 -19.76 -0.12 -2.94 16 3 C -0.01 -0.15 9.67 22.28 0.22 0.07 16 4 C -0.20 -3.42 10.00 22.29 0.22 -3.20 16 5 C 0.15 3.97 7.29 22.67 0.17 4.14 16 6 F -0.14 -4.03 16.83 44.97 0.76 -3.28 16 7 C -0.26 -7.59 5.77 -19.96 -0.12 -7.71 16 8 C 0.52 17.86 5.75 70.16 0.40 18.27 16 9 O -0.51 -18.28 16.37 19.70 0.32 -17.95 16 10 O -0.34 -12.69 9.43 -50.52 -0.48 -13.17 16 11 C 0.07 2.59 2.18 29.85 0.07 2.65 16 12 H 0.12 3.79 6.42 -2.39 -0.02 3.78 16 13 C -0.17 -4.54 9.19 71.98 0.66 -3.88 16 14 C 0.50 22.45 7.15 87.65 0.63 23.08 16 15 O -0.58 -31.89 16.08 15.77 0.25 -31.63 16 16 N -0.60 -25.71 2.86 -851.13 -2.43 -28.15 16 17 C 0.07 1.95 8.80 127.77 1.12 3.07 16 18 C 0.26 14.04 5.16 85.63 0.44 14.49 16 19 C -0.55 -31.56 9.39 25.60 0.24 -31.32 16 20 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 21 C 0.01 0.55 5.46 84.65 0.46 1.02 16 22 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 23 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 27 C 0.28 6.52 6.74 38.72 0.26 6.78 16 28 N -0.85 -18.76 8.89 -50.94 -0.45 -19.21 16 29 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.06 0.62 6.54 -2.39 -0.02 0.60 16 31 H 0.09 0.52 8.08 -2.39 -0.02 0.50 16 32 H 0.18 0.73 8.06 -2.91 -0.02 0.70 16 33 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.12 2.55 4.54 -2.39 -0.01 2.54 16 37 H 0.09 2.00 6.95 -2.39 -0.02 1.98 16 38 H 0.08 2.36 8.07 -2.39 -0.02 2.34 16 39 H 0.09 2.11 6.01 -2.39 -0.01 2.09 16 40 H 0.03 1.83 8.07 -2.38 -0.02 1.81 16 41 H 0.00 0.03 7.42 -2.39 -0.02 0.01 16 42 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 43 H 0.42 6.52 6.80 -92.71 -0.63 5.89 16 44 H 0.39 10.22 7.68 -92.71 -0.71 9.51 16 Total: -1.00 -82.15 375.87 5.36 -76.79 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -0.27 Total: 21.18 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 5.34 Total: 24.22 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -2.60 Total: -102.79 kcal Atomic # 8 Polarization: -62.85 SS G_CDS: 0.10 Total: -62.75 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.76 Total: -3.28 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -82.15 5.36 -76.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747268597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.821 kcal (2) G-P(sol) polarization free energy of solvation -82.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds