Wall clock time and date at job start Tue Mar 31 2020 21:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38070 * 119.93415 * 2 1 4 4 C 1.38450 * 120.48467 * 180.02562 * 3 2 1 5 5 C 1.38118 * 120.32868 * 359.97438 * 4 3 2 6 6 F 1.35097 * 120.07213 * 179.97438 * 5 4 3 7 7 C 1.40021 * 119.84850 * 359.97438 * 5 4 3 8 8 C 1.47137 * 120.23537 * 179.97438 * 7 5 4 9 9 O 1.21540 * 119.99674 * 89.99703 * 8 7 5 10 10 O 1.34783 * 119.99684 * 270.00313 * 8 7 5 11 11 C 1.45205 * 116.99445 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.47479 * 29.99628 * 11 10 8 13 13 C 1.53006 * 109.46889 * 269.99623 * 11 10 8 14 14 C 1.50700 * 109.47131 * 150.00137 * 11 10 8 15 15 O 1.21281 * 119.99959 * 16.01307 * 14 11 10 16 16 N 1.34778 * 119.99806 * 196.02476 * 14 11 10 17 17 C 1.46494 * 120.00128 * 5.36099 * 16 14 11 18 18 C 1.46499 * 119.99700 * 185.35729 * 16 14 11 19 19 C 1.50702 * 109.46860 * 89.99917 * 18 16 14 20 20 H 1.07999 * 120.00293 * 0.02562 * 19 18 16 21 21 C 1.37877 * 120.00108 * 179.97438 * 19 18 16 22 22 N 1.31522 * 119.99787 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00333 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46945 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47162 * 120.00051 * 23 21 19 26 26 H 1.48502 * 109.47218 * 240.00148 * 23 21 19 27 27 C 1.38840 * 119.92688 * 180.25343 * 2 1 3 28 28 N 1.38852 * 120.16829 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.47140 * 90.00064 * 1 2 3 30 30 H 1.09001 * 109.47551 * 210.00100 * 1 2 3 31 31 H 1.09008 * 109.47098 * 330.00286 * 1 2 3 32 32 H 1.07999 * 119.75926 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.83489 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47515 * 66.13540 * 13 11 10 35 35 H 1.09009 * 109.47113 * 306.13843 * 13 11 10 36 36 H 1.09000 * 109.47126 * 186.14076 * 13 11 10 37 37 H 1.08998 * 109.47479 * 84.82343 * 17 16 14 38 38 H 1.09002 * 109.47016 * 204.82429 * 17 16 14 39 39 H 1.09000 * 109.46810 * 324.81906 * 17 16 14 40 40 H 1.08994 * 109.47566 * 209.99742 * 18 16 14 41 41 H 1.09008 * 109.47508 * 330.00271 * 18 16 14 42 42 H 0.96998 * 120.00000 * 179.97438 * 22 21 19 43 43 H 0.96995 * 120.00040 * 180.20818 * 28 27 2 44 44 H 0.97003 * 119.99519 * 0.20582 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1965 0.0000 4 6 3.5804 1.2098 -0.0005 5 6 4.2892 0.0244 -0.0005 6 9 5.6401 0.0435 -0.0016 7 6 3.6046 -1.1970 0.0005 8 6 4.3512 -2.4649 0.0000 9 8 4.6608 -2.9882 1.0523 10 8 4.6918 -3.0458 -1.1676 11 6 5.4272 -4.2956 -1.0921 12 1 5.1456 -4.8286 -0.1840 13 6 6.9288 -4.0030 -1.0669 14 6 5.1009 -5.1438 -2.2942 15 8 4.5700 -4.6437 -3.2632 16 7 5.3989 -6.4582 -2.2923 17 6 5.9312 -7.0869 -1.0810 18 6 5.1902 -7.2583 -3.5017 19 6 6.4408 -7.2334 -4.3423 20 1 7.3047 -6.6777 -4.0088 21 6 6.4825 -7.9211 -5.5366 22 7 5.4306 -8.5982 -5.9425 23 14 8.0323 -7.8897 -6.5789 24 1 9.0651 -7.0621 -5.9054 25 1 8.5420 -9.2740 -6.7498 26 1 7.7221 -7.3087 -7.9099 27 6 2.1996 -1.2033 -0.0053 28 7 1.5074 -2.4069 -0.0101 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8901 0.5138 32 1 1.6509 2.1289 0.0004 33 1 4.1086 2.1518 -0.0009 34 1 7.1823 -3.4833 -0.1429 35 1 7.1914 -3.3768 -1.9197 36 1 7.4826 -4.9403 -1.1203 37 1 5.1067 -7.3769 -0.4296 38 1 6.5071 -7.9713 -1.3537 39 1 6.5760 -6.3804 -0.5583 40 1 4.9608 -8.2864 -3.2222 41 1 4.3600 -6.8432 -4.0733 42 1 5.4597 -9.0817 -6.7829 43 1 1.9937 -3.2461 -0.0108 44 1 0.5373 -2.4084 -0.0128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747268599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:36 Heat of formation + Delta-G solvation = -135.354793 kcal Electronic energy + Delta-G solvation = -29592.572332 eV Core-core repulsion = 25231.758728 eV Total energy + Delta-G solvation = -4360.813604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.17042 -40.90111 -39.68191 -38.76537 -36.37792 -35.00854 -34.91700 -33.03456 -32.72938 -31.54093 -29.77336 -27.81485 -26.86800 -26.11341 -25.20349 -24.05998 -22.50535 -21.96451 -20.72308 -18.87364 -18.38529 -18.26271 -17.79088 -16.90992 -16.56076 -16.05126 -15.92999 -15.79775 -15.57669 -15.39234 -15.20825 -14.71945 -14.51543 -14.27446 -14.19064 -13.63929 -13.51530 -13.21077 -12.87028 -12.51338 -12.50385 -12.40584 -12.20545 -12.15820 -12.09367 -11.84339 -11.75237 -11.43855 -11.26453 -10.97509 -10.92710 -10.75373 -10.69638 -10.59223 -10.20015 -9.66742 -9.08296 -8.92565 -8.48087 -7.99037 -7.75544 -6.08992 -4.14235 0.65073 1.07399 1.89426 2.42675 3.19509 3.21370 3.27682 3.28963 3.35709 3.40004 3.82984 3.99717 4.37707 4.41045 4.49856 4.62063 4.77181 4.82115 4.97021 5.04704 5.07919 5.14540 5.25858 5.27486 5.43365 5.50730 5.55192 5.64814 5.71400 5.76800 5.80657 5.82769 6.04960 6.07477 6.22516 6.29490 6.40826 6.91504 6.94864 7.23243 7.36033 7.43204 7.58040 7.87187 8.16553 8.25318 8.80584 8.95733 9.51166 10.99170 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017208 B = 0.002716 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.781835 B =10308.045223 C =10603.644291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.179 4.179 3 C -0.022 4.022 4 C -0.211 4.211 5 C 0.185 3.815 6 F -0.128 7.128 7 C -0.224 4.224 8 C 0.519 3.481 9 O -0.494 6.494 10 O -0.315 6.315 11 C 0.067 3.933 12 H 0.102 0.898 13 C -0.165 4.165 14 C 0.510 3.490 15 O -0.519 6.519 16 N -0.596 5.596 17 C 0.073 3.927 18 C 0.245 3.755 19 C -0.529 4.529 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 C 0.292 3.708 28 N -0.855 5.855 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.263 0.737 43 H 0.403 0.597 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 16.592 16.275 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.184 4.184 3 C -0.041 4.041 4 C -0.232 4.232 5 C 0.165 3.835 6 F -0.106 7.106 7 C -0.231 4.231 8 C 0.361 3.639 9 O -0.382 6.382 10 O -0.230 6.230 11 C 0.008 3.992 12 H 0.120 0.880 13 C -0.223 4.223 14 C 0.294 3.706 15 O -0.394 6.394 16 N -0.329 5.329 17 C -0.071 4.071 18 C 0.127 3.873 19 C -0.568 4.568 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.208 1.208 27 C 0.182 3.818 28 N -0.392 5.392 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.232 0.768 44 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -8.230 16.512 15.885 24.345 hybrid contribution 1.172 -0.613 -0.535 1.426 sum -7.058 15.899 15.350 23.200 Atomic orbital electron populations 1.20607 0.90149 1.02789 1.02560 1.19320 0.96508 0.90913 1.11616 1.20765 0.92818 0.97389 0.93154 1.20770 0.94696 0.96577 1.11161 1.17241 0.76632 0.92432 0.97242 1.91543 1.28686 1.97279 1.93142 1.18326 0.92152 0.90445 1.22217 1.20859 0.76351 0.84336 0.82342 1.90855 1.51348 1.63294 1.32661 1.86856 1.66804 1.36568 1.32766 1.22763 0.93185 0.83255 0.99956 0.87980 1.22170 0.92259 1.04143 1.03711 1.19735 0.80383 0.82762 0.87724 1.90705 1.41788 1.71759 1.35141 1.48078 1.62688 1.07638 1.14539 1.21843 0.98482 0.99497 0.87286 1.19377 0.98067 0.89688 0.80185 1.21466 0.99191 1.31076 1.05080 0.92279 1.24942 0.96664 0.95132 0.97335 1.69943 1.28903 1.32207 1.22196 0.86425 0.82929 0.77653 0.80327 1.19742 1.20922 1.20809 1.17045 0.87996 0.87196 0.89587 1.42503 1.09890 1.05165 1.81648 0.90985 0.91998 0.90902 0.84379 0.84084 0.91164 0.90496 0.89349 0.93432 0.90001 0.92218 0.94601 0.93583 0.92691 0.76833 0.76080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 9.56 36.00 0.34 -0.24 16 2 C -0.18 -1.56 5.89 -104.46 -0.62 -2.17 16 3 C -0.02 -0.17 9.67 -39.56 -0.38 -0.56 16 4 C -0.21 -2.00 10.00 -39.55 -0.40 -2.39 16 5 C 0.18 2.37 7.29 -38.96 -0.28 2.09 16 6 F -0.13 -1.80 16.83 2.25 0.04 -1.76 16 7 C -0.22 -3.12 5.77 -104.77 -0.60 -3.72 16 8 C 0.52 8.38 5.75 34.34 0.20 8.58 16 9 O -0.49 -8.43 16.37 -19.30 -0.32 -8.74 16 10 O -0.32 -5.70 9.48 -47.25 -0.45 -6.15 16 11 C 0.07 1.17 2.14 -27.88 -0.06 1.11 16 12 H 0.10 1.59 6.32 -51.93 -0.33 1.26 16 13 C -0.17 -2.54 9.19 37.16 0.34 -2.20 16 14 C 0.51 11.05 6.95 -10.98 -0.08 10.97 16 15 O -0.52 -13.55 16.13 -13.54 -0.22 -13.77 16 16 N -0.60 -12.67 2.86 -182.96 -0.52 -13.19 16 17 C 0.07 1.15 9.79 59.84 0.59 1.73 16 18 C 0.25 6.37 5.18 -5.19 -0.03 6.35 16 19 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 20 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 23 Si 0.90 21.75 29.54 -169.99 -5.02 16.72 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.29 3.31 6.74 -83.61 -0.56 2.74 16 28 N -0.85 -8.33 8.89 32.55 0.29 -8.04 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.30 6.56 -51.93 -0.34 -0.04 16 31 H 0.07 0.30 8.08 -51.92 -0.42 -0.12 16 32 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 36 H 0.09 1.26 6.33 -51.93 -0.33 0.93 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 39 H 0.06 0.80 4.92 -51.93 -0.26 0.54 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.05 1.35 7.36 -51.92 -0.38 0.97 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.40 4.39 7.68 -40.82 -0.31 4.07 16 44 H 0.41 2.75 6.81 -40.82 -0.28 2.48 16 LS Contribution 378.44 15.07 5.70 5.70 Total: -1.00 -35.61 378.44 -7.28 -42.89 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.56 Total: 3.22 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: -1.96 Total: 8.74 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.50 Total: -46.85 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.98 Total: -28.66 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.61 -7.28 -42.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747268599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.462 kcal (2) G-P(sol) polarization free energy of solvation -35.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds