Wall clock time and date at job start Tue Mar 31 2020 21:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38070 * 119.93415 * 2 1 4 4 C 1.38450 * 120.48467 * 180.02562 * 3 2 1 5 5 C 1.38118 * 120.32868 * 359.97438 * 4 3 2 6 6 F 1.35097 * 120.07213 * 179.97438 * 5 4 3 7 7 C 1.40021 * 119.84850 * 359.97438 * 5 4 3 8 8 C 1.47137 * 120.23537 * 179.97438 * 7 5 4 9 9 O 1.21540 * 119.99674 * 89.99703 * 8 7 5 10 10 O 1.34783 * 119.99684 * 270.00313 * 8 7 5 11 11 C 1.45205 * 116.99445 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.47479 * 29.99628 * 11 10 8 13 13 C 1.53006 * 109.46889 * 269.99623 * 11 10 8 14 14 C 1.50700 * 109.47131 * 150.00137 * 11 10 8 15 15 O 1.21281 * 119.99959 * 16.01307 * 14 11 10 16 16 N 1.34778 * 119.99806 * 196.02476 * 14 11 10 17 17 C 1.46494 * 120.00128 * 5.36099 * 16 14 11 18 18 C 1.46499 * 119.99700 * 185.35729 * 16 14 11 19 19 C 1.50702 * 109.46860 * 89.99917 * 18 16 14 20 20 H 1.07999 * 120.00293 * 0.02562 * 19 18 16 21 21 C 1.37877 * 120.00108 * 179.97438 * 19 18 16 22 22 N 1.31522 * 119.99787 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00333 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46945 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47162 * 120.00051 * 23 21 19 26 26 H 1.48502 * 109.47218 * 240.00148 * 23 21 19 27 27 C 1.38840 * 119.92688 * 180.25343 * 2 1 3 28 28 N 1.38852 * 120.16829 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.47140 * 90.00064 * 1 2 3 30 30 H 1.09001 * 109.47551 * 210.00100 * 1 2 3 31 31 H 1.09008 * 109.47098 * 330.00286 * 1 2 3 32 32 H 1.07999 * 119.75926 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.83489 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47515 * 66.13540 * 13 11 10 35 35 H 1.09009 * 109.47113 * 306.13843 * 13 11 10 36 36 H 1.09000 * 109.47126 * 186.14076 * 13 11 10 37 37 H 1.08998 * 109.47479 * 84.82343 * 17 16 14 38 38 H 1.09002 * 109.47016 * 204.82429 * 17 16 14 39 39 H 1.09000 * 109.46810 * 324.81906 * 17 16 14 40 40 H 1.08994 * 109.47566 * 209.99742 * 18 16 14 41 41 H 1.09008 * 109.47508 * 330.00271 * 18 16 14 42 42 H 0.96998 * 120.00000 * 179.97438 * 22 21 19 43 43 H 0.96995 * 120.00040 * 180.20818 * 28 27 2 44 44 H 0.97003 * 119.99519 * 0.20582 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1965 0.0000 4 6 3.5804 1.2098 -0.0005 5 6 4.2892 0.0244 -0.0005 6 9 5.6401 0.0435 -0.0016 7 6 3.6046 -1.1970 0.0005 8 6 4.3512 -2.4649 0.0000 9 8 4.6608 -2.9882 1.0523 10 8 4.6918 -3.0458 -1.1676 11 6 5.4272 -4.2956 -1.0921 12 1 5.1456 -4.8286 -0.1840 13 6 6.9288 -4.0030 -1.0669 14 6 5.1009 -5.1438 -2.2942 15 8 4.5700 -4.6437 -3.2632 16 7 5.3989 -6.4582 -2.2923 17 6 5.9312 -7.0869 -1.0810 18 6 5.1902 -7.2583 -3.5017 19 6 6.4408 -7.2334 -4.3423 20 1 7.3047 -6.6777 -4.0088 21 6 6.4825 -7.9211 -5.5366 22 7 5.4306 -8.5982 -5.9425 23 14 8.0323 -7.8897 -6.5789 24 1 9.0651 -7.0621 -5.9054 25 1 8.5420 -9.2740 -6.7498 26 1 7.7221 -7.3087 -7.9099 27 6 2.1996 -1.2033 -0.0053 28 7 1.5074 -2.4069 -0.0101 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8901 0.5138 32 1 1.6509 2.1289 0.0004 33 1 4.1086 2.1518 -0.0009 34 1 7.1823 -3.4833 -0.1429 35 1 7.1914 -3.3768 -1.9197 36 1 7.4826 -4.9403 -1.1203 37 1 5.1067 -7.3769 -0.4296 38 1 6.5071 -7.9713 -1.3537 39 1 6.5760 -6.3804 -0.5583 40 1 4.9608 -8.2864 -3.2222 41 1 4.3600 -6.8432 -4.0733 42 1 5.4597 -9.0817 -6.7829 43 1 1.9937 -3.2461 -0.0108 44 1 0.5373 -2.4084 -0.0128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747268599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:35 Heat of formation + Delta-G solvation = -158.140088 kcal Electronic energy + Delta-G solvation = -29593.560377 eV Core-core repulsion = 25231.758728 eV Total energy + Delta-G solvation = -4361.801649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.12660 -42.13969 -40.87920 -40.09423 -37.73402 -36.73537 -35.76249 -34.89494 -33.76115 -32.91312 -30.57262 -29.73270 -27.63958 -27.49096 -26.43034 -25.61790 -24.06250 -22.80756 -21.86420 -20.49367 -19.47968 -19.12685 -18.73253 -18.70999 -18.32414 -17.55264 -17.09971 -17.00986 -16.74783 -16.41173 -16.35993 -16.26184 -16.04987 -15.30828 -14.92338 -14.81243 -14.75018 -14.37490 -14.30117 -14.11385 -13.72471 -13.61694 -13.40584 -13.16386 -13.13115 -13.06675 -12.99897 -12.86630 -12.74108 -12.55513 -12.49880 -12.24095 -12.07897 -11.85158 -11.71422 -11.70987 -10.71155 -10.67055 -9.86961 -9.56881 -8.74667 -8.25611 -6.40260 -0.17538 0.30674 0.67837 1.17934 1.35999 1.38361 1.48262 1.53865 2.25701 2.39317 2.45488 2.53696 3.04779 3.17087 3.30600 3.37565 3.64784 3.71315 3.79131 3.86564 4.15956 4.22844 4.28563 4.43215 4.49880 4.58497 4.59990 4.73250 4.80854 4.87860 4.88838 4.94160 5.00385 5.02941 5.12863 5.17718 5.27584 5.38850 5.48225 5.70945 5.75025 6.00495 6.11014 6.29516 6.53514 6.56184 6.68453 7.14080 7.32545 8.82215 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017208 B = 0.002716 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.781835 B =10308.045223 C =10603.644291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.174 4.174 3 C -0.012 4.012 4 C -0.203 4.203 5 C 0.153 3.847 6 F -0.144 7.144 7 C -0.261 4.261 8 C 0.524 3.476 9 O -0.509 6.509 10 O -0.336 6.336 11 C 0.076 3.924 12 H 0.125 0.875 13 C -0.161 4.161 14 C 0.504 3.496 15 O -0.576 6.576 16 N -0.598 5.598 17 C 0.065 3.935 18 C 0.259 3.741 19 C -0.545 4.545 20 H 0.057 0.943 21 C 0.009 3.991 22 N -0.927 5.927 23 Si 0.968 3.032 24 H -0.266 1.266 25 H -0.268 1.268 26 H -0.282 1.282 27 C 0.277 3.723 28 N -0.853 5.853 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.182 0.818 33 H 0.166 0.834 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.033 0.967 41 H 0.001 0.999 42 H 0.268 0.732 43 H 0.395 0.605 44 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.093 18.226 17.637 26.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.179 4.179 3 C -0.030 4.030 4 C -0.224 4.224 5 C 0.133 3.867 6 F -0.123 7.123 7 C -0.269 4.269 8 C 0.367 3.633 9 O -0.397 6.397 10 O -0.252 6.252 11 C 0.018 3.982 12 H 0.142 0.858 13 C -0.218 4.218 14 C 0.290 3.710 15 O -0.455 6.455 16 N -0.330 5.330 17 C -0.077 4.077 18 C 0.138 3.862 19 C -0.584 4.584 20 H 0.075 0.925 21 C -0.190 4.190 22 N -0.567 5.567 23 Si 0.792 3.208 24 H -0.190 1.190 25 H -0.193 1.193 26 H -0.208 1.208 27 C 0.167 3.833 28 N -0.390 5.390 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.199 0.801 33 H 0.183 0.817 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.051 0.949 41 H 0.019 0.981 42 H 0.077 0.923 43 H 0.222 0.778 44 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -8.294 18.134 17.304 26.402 hybrid contribution 1.066 -1.076 -0.921 1.773 sum -7.228 17.058 16.384 24.731 Atomic orbital electron populations 1.20723 0.87673 1.04377 1.03387 1.19799 0.98251 0.90150 1.09666 1.21305 0.92227 0.98747 0.90770 1.21157 0.95573 0.96209 1.09430 1.17644 0.76257 0.93357 0.99435 1.91489 1.29867 1.97385 1.93560 1.18504 0.93297 0.89634 1.25430 1.21301 0.75786 0.84721 0.81454 1.90815 1.52133 1.63983 1.32814 1.86870 1.67226 1.36713 1.34343 1.22661 0.94392 0.83088 0.98090 0.85764 1.22181 0.90677 1.04815 1.04107 1.20485 0.79125 0.82939 0.88407 1.90665 1.44344 1.72888 1.37634 1.48051 1.62475 1.07607 1.14849 1.22177 0.99999 1.00007 0.85476 1.18887 0.95989 0.89625 0.81678 1.21728 0.99606 1.31125 1.05910 0.92496 1.25852 0.99993 0.94605 0.98573 1.70054 1.30953 1.32839 1.22818 0.85358 0.78927 0.78357 0.78120 1.19017 1.19336 1.20838 1.17343 0.87347 0.88579 0.90023 1.42522 1.10549 1.04545 1.81429 0.90385 0.91342 0.88499 0.80107 0.81663 0.89192 0.91903 0.87983 0.90635 0.89905 0.89310 0.94936 0.98096 0.92314 0.77760 0.74584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.56 71.23 0.68 -0.16 16 2 C -0.17 -2.62 5.89 -19.76 -0.12 -2.74 16 3 C -0.01 -0.15 9.67 22.28 0.22 0.07 16 4 C -0.20 -3.43 10.00 22.29 0.22 -3.21 16 5 C 0.15 3.92 7.29 22.67 0.17 4.09 16 6 F -0.14 -4.16 16.83 44.97 0.76 -3.40 16 7 C -0.26 -7.37 5.77 -19.96 -0.12 -7.49 16 8 C 0.52 17.30 5.75 70.16 0.40 17.71 16 9 O -0.51 -17.47 16.37 19.71 0.32 -17.14 16 10 O -0.34 -12.54 9.48 -50.70 -0.48 -13.02 16 11 C 0.08 2.65 2.14 29.85 0.06 2.71 16 12 H 0.12 3.75 6.32 -2.39 -0.02 3.73 16 13 C -0.16 -4.82 9.19 71.98 0.66 -4.16 16 14 C 0.50 22.49 6.95 87.66 0.61 23.10 16 15 O -0.58 -31.76 16.13 15.23 0.25 -31.52 16 16 N -0.60 -25.82 2.86 -851.14 -2.43 -28.25 16 17 C 0.07 1.96 9.79 127.77 1.25 3.21 16 18 C 0.26 13.97 5.18 85.63 0.44 14.42 16 19 C -0.55 -31.25 9.39 25.60 0.24 -31.01 16 20 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 21 C 0.01 0.52 5.46 84.65 0.46 0.98 16 22 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 23 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 27 C 0.28 6.13 6.74 38.73 0.26 6.40 16 28 N -0.85 -16.51 8.89 -50.93 -0.45 -16.96 16 29 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.07 0.47 6.56 -2.39 -0.02 0.46 16 31 H 0.10 0.35 8.08 -2.38 -0.02 0.33 16 32 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 33 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.10 2.74 6.33 -2.39 -0.02 2.73 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 2.51 8.03 -2.39 -0.02 2.49 16 39 H 0.09 2.17 4.92 -2.39 -0.01 2.15 16 40 H 0.03 1.75 8.07 -2.39 -0.02 1.73 16 41 H 0.00 0.06 7.36 -2.38 -0.02 0.04 16 42 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 43 H 0.39 8.89 7.68 -92.71 -0.71 8.18 16 44 H 0.42 5.36 6.81 -92.71 -0.63 4.73 16 Total: -1.00 -81.67 378.44 5.45 -76.22 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -0.27 Total: 18.87 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 5.45 Total: 23.92 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -2.60 Total: -100.72 kcal Atomic # 8 Polarization: -61.77 SS G_CDS: 0.09 Total: -61.68 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.76 Total: -3.40 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -81.67 5.45 -76.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747268599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.920 kcal (2) G-P(sol) polarization free energy of solvation -81.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds