Wall clock time and date at job start Tue Mar 31 2020 20:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48498 * 109.47445 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47030 * 299.99757 * 3 2 1 6 6 H 1.48496 * 109.47392 * 59.99461 * 3 2 1 7 7 C 1.38637 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99671 * 180.02562 * 7 2 1 9 9 O 1.34804 * 120.00586 * 0.02562 * 7 2 1 10 10 C 1.35774 * 117.00360 * 174.47331 * 9 7 2 11 11 C 1.38740 * 120.08871 * 354.12283 * 10 9 7 12 12 C 1.38340 * 119.97578 * 179.97438 * 11 10 9 13 13 F 1.35105 * 119.91887 * 180.02562 * 12 11 10 14 14 C 1.38544 * 120.15413 * 359.97438 * 12 11 10 15 15 C 1.38198 * 120.17556 * 0.29730 * 14 12 11 16 16 C 1.38700 * 120.01613 * 359.45342 * 15 14 12 17 17 N 1.40140 * 120.07359 * 180.25560 * 16 15 14 18 18 C 1.34781 * 120.00052 * 33.98575 * 17 16 15 19 19 O 1.21597 * 119.99834 * 5.66666 * 18 17 16 20 20 N 1.34770 * 119.99890 * 185.66579 * 18 17 16 21 21 C 1.46502 * 120.00000 * 180.02562 * 20 18 17 22 22 H 1.08998 * 109.47130 * 324.99803 * 21 20 18 23 23 C 1.53005 * 109.47084 * 84.99798 * 21 20 18 24 24 O 1.42893 * 109.47249 * 65.00145 * 23 21 20 25 25 C 1.53002 * 109.47170 * 204.99582 * 21 20 18 26 26 C 1.53001 * 109.46760 * 64.99849 * 25 21 20 27 27 C 1.52997 * 117.50040 * 243.61854 * 26 25 21 28 28 C 1.53000 * 117.49488 * 174.99637 * 26 25 21 29 29 H 0.96996 * 120.00131 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00588 * 359.97438 * 11 10 9 31 31 H 1.07996 * 119.91119 * 180.02562 * 14 12 11 32 32 H 1.08000 * 119.99048 * 179.72035 * 15 14 12 33 33 H 0.96994 * 119.99666 * 213.99450 * 17 16 15 34 34 H 0.96996 * 120.00231 * 359.97438 * 20 18 17 35 35 H 1.09000 * 109.46921 * 185.00319 * 23 21 20 36 36 H 1.09004 * 109.46807 * 304.99742 * 23 21 20 37 37 H 0.96702 * 114.00045 * 180.02562 * 24 23 21 38 38 H 1.09004 * 109.46916 * 184.99595 * 25 21 20 39 39 H 1.09000 * 109.47040 * 305.00169 * 25 21 20 40 40 H 1.08998 * 115.54898 * 29.33526 * 26 25 21 41 41 H 1.09006 * 117.49930 * 0.02562 * 27 26 25 42 42 H 1.08995 * 117.50315 * 145.02249 * 27 26 25 43 43 H 1.08995 * 117.49969 * 214.97694 * 28 26 25 44 44 H 1.08999 * 117.50372 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3463 0.0006 5 1 1.8911 2.3963 -1.2125 6 1 1.8910 2.3964 1.2124 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0695 -3.5041 -0.1154 11 6 3.4350 -3.4285 -0.3492 12 6 4.1813 -4.5874 -0.4664 13 9 5.5110 -4.5124 -0.6935 14 6 3.5686 -5.8245 -0.3504 15 6 2.2079 -5.9072 -0.1232 16 6 1.4536 -4.7499 0.0007 17 7 0.0746 -4.8323 0.2365 18 6 -0.4219 -5.8354 0.9874 19 8 0.3330 -6.6086 1.5450 20 7 -1.7551 -5.9814 1.1203 21 6 -2.2948 -7.0714 1.9370 22 1 -1.6550 -7.9486 1.8408 23 6 -2.3442 -6.6344 3.4025 24 8 -3.2727 -5.5579 3.5475 25 6 -3.7071 -7.4153 1.4595 26 6 -3.6428 -7.9703 0.0351 27 6 -4.3363 -7.1680 -1.0677 28 6 -4.9448 -8.4850 -0.5819 29 1 -0.4850 0.8400 -0.0004 30 1 3.9149 -2.4653 -0.4396 31 1 4.1551 -6.7267 -0.4422 32 1 1.7326 -6.8732 -0.0378 33 1 -0.5225 -4.1675 -0.1408 34 1 -2.3573 -5.3644 0.6759 35 1 -2.6615 -7.4737 4.0213 36 1 -1.3539 -6.3049 3.7169 37 1 -3.3553 -5.2290 4.4531 38 1 -4.1423 -8.1638 2.1217 39 1 -4.3237 -6.5166 1.4717 40 1 -2.7219 -8.4921 -0.2250 41 1 -4.8381 -6.2445 -0.7785 42 1 -3.8716 -7.1616 -2.0536 43 1 -4.8804 -9.3451 -1.2483 44 1 -5.8471 -8.4288 0.0270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754988322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:05 Heat of formation + Delta-G solvation = -101.823736 kcal Electronic energy + Delta-G solvation = -29316.263669 eV Core-core repulsion = 24956.904080 eV Total energy + Delta-G solvation = -4359.359588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.21804 -40.30135 -39.03543 -37.98931 -36.83866 -36.29124 -34.40083 -33.96688 -32.38672 -30.74782 -29.34843 -27.93657 -26.76355 -25.47763 -22.91046 -22.49512 -21.92419 -21.20833 -20.60865 -20.30252 -18.32058 -18.27624 -17.62007 -17.38989 -16.78961 -15.99600 -15.56676 -15.22756 -15.09169 -14.96545 -14.94012 -14.56820 -14.28810 -14.09347 -13.87413 -13.56604 -13.49830 -13.30298 -13.23393 -12.84781 -12.41141 -12.22735 -12.07353 -11.67727 -11.60818 -11.41388 -11.39057 -11.25304 -10.97229 -10.70101 -10.50364 -10.41437 -10.10566 -10.03725 -9.82902 -9.75083 -9.43931 -8.94967 -8.87680 -7.84745 -7.04365 -6.58255 -4.15568 1.88571 2.15161 2.96198 3.06959 3.09385 3.14715 3.50546 3.64348 3.86657 4.23977 4.35035 4.39739 4.53389 4.70590 4.81155 4.89984 4.97680 4.99123 5.14786 5.15031 5.25332 5.36174 5.45334 5.48905 5.59900 5.66504 5.72741 5.77127 5.83198 5.87547 5.97740 6.06105 6.19152 6.26138 6.56429 6.68793 6.74277 6.94719 6.95440 7.11094 7.20244 7.37894 7.55200 7.69330 7.86131 8.34234 8.87397 8.92799 9.50096 10.58956 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.003393 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.277279 B = 8251.207891 C = 9829.558070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.391 4.391 8 H 0.094 0.906 9 O -0.169 6.169 10 C 0.156 3.844 11 C -0.257 4.257 12 C 0.126 3.874 13 F -0.152 7.152 14 C -0.227 4.227 15 C -0.051 4.051 16 C 0.084 3.916 17 N -0.665 5.665 18 C 0.705 3.295 19 O -0.591 6.591 20 N -0.730 5.730 21 C 0.174 3.826 22 H 0.100 0.900 23 C 0.059 3.941 24 O -0.568 6.568 25 C -0.092 4.092 26 C -0.150 4.150 27 C -0.179 4.179 28 C -0.184 4.184 29 H 0.271 0.729 30 H 0.142 0.858 31 H 0.122 0.878 32 H 0.136 0.864 33 H 0.411 0.589 34 H 0.400 0.600 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.377 0.623 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.464 -12.703 1.958 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.111 0.889 9 O -0.072 6.072 10 C 0.100 3.900 11 C -0.278 4.278 12 C 0.106 3.894 13 F -0.131 7.131 14 C -0.247 4.247 15 C -0.072 4.072 16 C -0.011 4.011 17 N -0.312 5.312 18 C 0.406 3.594 19 O -0.469 6.469 20 N -0.385 5.385 21 C 0.068 3.932 22 H 0.118 0.882 23 C -0.020 4.020 24 O -0.373 6.373 25 C -0.129 4.129 26 C -0.168 4.168 27 C -0.216 4.216 28 C -0.221 4.221 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.154 0.846 33 H 0.247 0.753 34 H 0.234 0.766 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.224 0.776 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.292 -13.290 1.838 15.772 hybrid contribution 0.311 1.623 0.219 1.667 sum -7.981 -11.667 2.057 14.285 Atomic orbital electron populations 1.70020 1.05913 1.27826 1.45550 1.25277 0.95899 0.98823 0.96235 0.85626 0.79300 0.80133 0.78324 1.18962 1.20036 1.20072 1.21384 0.91970 0.80450 1.52861 0.88851 1.83938 1.33847 1.11289 1.78086 1.18814 0.89512 0.87014 0.94661 1.20850 0.94117 0.98351 1.14520 1.17436 0.76658 0.94262 1.01021 1.91408 1.32037 1.97360 1.92291 1.20439 0.95179 0.95594 1.13492 1.20478 0.92589 0.97038 0.97071 1.16617 0.82671 0.90963 1.10864 1.42222 1.06528 1.29295 1.53157 1.15897 0.82379 0.81868 0.79292 1.90883 1.57388 1.46552 1.52119 1.44981 1.04954 1.33910 1.54651 1.20857 0.94644 0.89842 0.87857 0.88218 1.22720 0.92934 0.89342 0.96987 1.86459 1.64126 1.53010 1.33712 1.21383 0.95978 1.01451 0.94121 1.22323 0.96596 1.03856 0.94035 1.23037 1.04058 0.95436 0.99035 1.22948 0.97052 0.97947 1.04106 0.91920 0.84005 0.86018 0.84642 0.75316 0.76612 0.93160 0.92680 0.77635 0.90259 0.90193 0.87791 0.88683 0.88927 0.89077 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.62 13.67 55.48 0.76 -22.86 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 19.88 29.55 -169.99 -5.02 14.86 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.41 9.44 30.88 0.29 -10.12 16 8 H 0.09 2.35 5.30 -52.48 -0.28 2.08 16 9 O -0.17 -4.45 9.30 0.05 0.00 -4.45 16 10 C 0.16 3.64 6.66 -38.94 -0.26 3.39 16 11 C -0.26 -5.70 9.11 -39.36 -0.36 -6.05 16 12 C 0.13 2.55 7.29 -39.43 -0.29 2.27 16 13 F -0.15 -2.95 17.26 2.25 0.04 -2.91 16 14 C -0.23 -4.26 10.02 -39.48 -0.40 -4.66 16 15 C -0.05 -0.99 8.65 -39.43 -0.34 -1.33 16 16 C 0.08 1.76 6.29 -83.43 -0.52 1.24 16 17 N -0.67 -12.49 5.21 -14.07 -0.07 -12.56 16 18 C 0.70 12.30 8.26 -86.92 -0.72 11.58 16 19 O -0.59 -11.74 13.76 5.28 0.07 -11.66 16 20 N -0.73 -9.85 4.75 -58.67 -0.28 -10.12 16 21 C 0.17 1.97 2.33 -67.93 -0.16 1.82 16 22 H 0.10 1.20 7.58 -51.93 -0.39 0.81 16 23 C 0.06 0.66 6.85 37.16 0.25 0.91 16 24 O -0.57 -6.26 12.83 -35.23 -0.45 -6.72 16 25 C -0.09 -0.84 4.75 -26.73 -0.13 -0.96 16 26 C -0.15 -1.37 5.47 -90.62 -0.50 -1.87 16 27 C -0.18 -1.61 10.18 -26.73 -0.27 -1.88 16 28 C -0.18 -1.49 10.25 -26.73 -0.27 -1.77 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.14 3.14 5.72 -52.49 -0.30 2.84 16 31 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.14 2.53 6.47 -52.49 -0.34 2.19 16 33 H 0.41 7.47 8.56 -40.82 -0.35 7.12 16 34 H 0.40 5.00 8.62 -40.82 -0.35 4.65 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.38 2.76 9.12 45.56 0.42 3.17 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.79 7.46 -51.93 -0.39 0.40 16 40 H 0.10 1.04 8.07 -51.93 -0.42 0.62 16 41 H 0.09 0.84 8.03 -51.93 -0.42 0.43 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -31.00 378.85 -7.92 -38.93 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -4.92 Total: 18.22 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -3.76 Total: -6.42 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.41 Total: -45.55 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.38 Total: -22.83 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.00 -7.92 -38.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754988322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.897 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds