Wall clock time and date at job start Tue Mar 31 2020 20:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48498 * 109.47445 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47030 * 299.99757 * 3 2 1 6 6 H 1.48496 * 109.47392 * 59.99461 * 3 2 1 7 7 C 1.38637 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99671 * 180.02562 * 7 2 1 9 9 O 1.34804 * 120.00586 * 0.02562 * 7 2 1 10 10 C 1.35774 * 117.00360 * 174.47331 * 9 7 2 11 11 C 1.38740 * 120.08871 * 354.12283 * 10 9 7 12 12 C 1.38340 * 119.97578 * 179.97438 * 11 10 9 13 13 F 1.35105 * 119.91887 * 180.02562 * 12 11 10 14 14 C 1.38544 * 120.15413 * 359.97438 * 12 11 10 15 15 C 1.38198 * 120.17556 * 0.29730 * 14 12 11 16 16 C 1.38700 * 120.01613 * 359.45342 * 15 14 12 17 17 N 1.40140 * 120.07359 * 180.25560 * 16 15 14 18 18 C 1.34781 * 120.00052 * 33.98575 * 17 16 15 19 19 O 1.21597 * 119.99834 * 5.66666 * 18 17 16 20 20 N 1.34770 * 119.99890 * 185.66579 * 18 17 16 21 21 C 1.46502 * 120.00000 * 180.02562 * 20 18 17 22 22 H 1.08998 * 109.47130 * 324.99803 * 21 20 18 23 23 C 1.53005 * 109.47084 * 84.99798 * 21 20 18 24 24 O 1.42893 * 109.47249 * 65.00145 * 23 21 20 25 25 C 1.53002 * 109.47170 * 204.99582 * 21 20 18 26 26 C 1.53001 * 109.46760 * 64.99849 * 25 21 20 27 27 C 1.52997 * 117.50040 * 243.61854 * 26 25 21 28 28 C 1.53000 * 117.49488 * 174.99637 * 26 25 21 29 29 H 0.96996 * 120.00131 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00588 * 359.97438 * 11 10 9 31 31 H 1.07996 * 119.91119 * 180.02562 * 14 12 11 32 32 H 1.08000 * 119.99048 * 179.72035 * 15 14 12 33 33 H 0.96994 * 119.99666 * 213.99450 * 17 16 15 34 34 H 0.96996 * 120.00231 * 359.97438 * 20 18 17 35 35 H 1.09000 * 109.46921 * 185.00319 * 23 21 20 36 36 H 1.09004 * 109.46807 * 304.99742 * 23 21 20 37 37 H 0.96702 * 114.00045 * 180.02562 * 24 23 21 38 38 H 1.09004 * 109.46916 * 184.99595 * 25 21 20 39 39 H 1.09000 * 109.47040 * 305.00169 * 25 21 20 40 40 H 1.08998 * 115.54898 * 29.33526 * 26 25 21 41 41 H 1.09006 * 117.49930 * 0.02562 * 27 26 25 42 42 H 1.08995 * 117.50315 * 145.02249 * 27 26 25 43 43 H 1.08995 * 117.49969 * 214.97694 * 28 26 25 44 44 H 1.08999 * 117.50372 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3463 0.0006 5 1 1.8911 2.3963 -1.2125 6 1 1.8910 2.3964 1.2124 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0695 -3.5041 -0.1154 11 6 3.4350 -3.4285 -0.3492 12 6 4.1813 -4.5874 -0.4664 13 9 5.5110 -4.5124 -0.6935 14 6 3.5686 -5.8245 -0.3504 15 6 2.2079 -5.9072 -0.1232 16 6 1.4536 -4.7499 0.0007 17 7 0.0746 -4.8323 0.2365 18 6 -0.4219 -5.8354 0.9874 19 8 0.3330 -6.6086 1.5450 20 7 -1.7551 -5.9814 1.1203 21 6 -2.2948 -7.0714 1.9370 22 1 -1.6550 -7.9486 1.8408 23 6 -2.3442 -6.6344 3.4025 24 8 -3.2727 -5.5579 3.5475 25 6 -3.7071 -7.4153 1.4595 26 6 -3.6428 -7.9703 0.0351 27 6 -4.3363 -7.1680 -1.0677 28 6 -4.9448 -8.4850 -0.5819 29 1 -0.4850 0.8400 -0.0004 30 1 3.9149 -2.4653 -0.4396 31 1 4.1551 -6.7267 -0.4422 32 1 1.7326 -6.8732 -0.0378 33 1 -0.5225 -4.1675 -0.1408 34 1 -2.3573 -5.3644 0.6759 35 1 -2.6615 -7.4737 4.0213 36 1 -1.3539 -6.3049 3.7169 37 1 -3.3553 -5.2290 4.4531 38 1 -4.1423 -8.1638 2.1217 39 1 -4.3237 -6.5166 1.4717 40 1 -2.7219 -8.4921 -0.2250 41 1 -4.8381 -6.2445 -0.7785 42 1 -3.8716 -7.1616 -2.0536 43 1 -4.8804 -9.3451 -1.2483 44 1 -5.8471 -8.4288 0.0270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754988322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:04 Heat of formation + Delta-G solvation = -123.199721 kcal Electronic energy + Delta-G solvation = -29317.190601 eV Core-core repulsion = 24956.904080 eV Total energy + Delta-G solvation = -4360.286521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.81636 -41.76041 -40.55009 -39.06931 -38.02307 -37.57895 -35.54503 -35.44810 -34.30733 -31.86627 -31.02253 -29.48973 -27.60777 -27.38003 -24.38289 -23.54067 -23.17228 -22.45090 -21.58953 -21.42499 -20.13989 -19.71763 -19.20961 -18.42574 -18.14899 -17.19168 -17.07122 -16.91913 -16.56386 -16.25932 -16.01891 -15.92757 -15.63923 -15.42159 -15.26053 -15.19917 -14.89572 -14.85235 -14.15019 -13.99452 -13.81675 -13.72051 -13.38362 -13.18556 -12.99797 -12.60990 -12.35860 -12.33398 -12.24258 -12.12772 -12.05636 -11.66945 -11.35388 -11.17428 -11.06423 -10.84433 -10.82410 -10.75729 -10.05294 -9.54347 -8.70943 -8.51018 -6.16687 0.22278 0.47324 1.36806 1.42607 1.52983 1.64961 2.07617 2.14121 2.69650 2.94220 3.06156 3.16543 3.21938 3.43408 3.46692 3.59535 3.94271 3.96003 4.10576 4.17253 4.20088 4.35337 4.36690 4.41497 4.55539 4.57589 4.65303 4.83859 4.87358 4.91828 4.94778 5.02188 5.07579 5.10737 5.23390 5.29801 5.30806 5.34405 5.44184 5.55349 5.63285 5.92842 5.96306 6.10025 6.86672 6.93697 6.97673 7.50279 7.64705 8.69931 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.003393 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.277279 B = 8251.207891 C = 9829.558070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.009 4.009 3 Si 1.012 2.988 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.415 4.415 8 H 0.098 0.902 9 O -0.204 6.204 10 C 0.129 3.871 11 C -0.263 4.263 12 C 0.120 3.880 13 F -0.145 7.145 14 C -0.201 4.201 15 C -0.051 4.051 16 C 0.084 3.916 17 N -0.669 5.669 18 C 0.704 3.296 19 O -0.614 6.614 20 N -0.715 5.715 21 C 0.168 3.832 22 H 0.095 0.905 23 C 0.063 3.937 24 O -0.581 6.581 25 C -0.078 4.078 26 C -0.156 4.156 27 C -0.189 4.189 28 C -0.170 4.170 29 H 0.274 0.726 30 H 0.135 0.865 31 H 0.159 0.841 32 H 0.149 0.851 33 H 0.411 0.589 34 H 0.405 0.595 35 H 0.081 0.919 36 H 0.025 0.975 37 H 0.393 0.607 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.519 -14.178 2.223 16.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.490 4.490 8 H 0.115 0.885 9 O -0.109 6.109 10 C 0.075 3.925 11 C -0.284 4.284 12 C 0.100 3.900 13 F -0.124 7.124 14 C -0.220 4.220 15 C -0.071 4.071 16 C -0.011 4.011 17 N -0.315 5.315 18 C 0.405 3.595 19 O -0.495 6.495 20 N -0.369 5.369 21 C 0.063 3.937 22 H 0.113 0.887 23 C -0.016 4.016 24 O -0.388 6.388 25 C -0.116 4.116 26 C -0.174 4.174 27 C -0.226 4.226 28 C -0.207 4.207 29 H 0.084 0.916 30 H 0.153 0.847 31 H 0.176 0.824 32 H 0.167 0.833 33 H 0.247 0.753 34 H 0.240 0.760 35 H 0.099 0.901 36 H 0.043 0.957 37 H 0.242 0.758 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.116 0.884 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.366 -14.811 2.114 17.141 hybrid contribution 0.353 1.819 0.149 1.859 sum -8.013 -12.992 2.264 15.431 Atomic orbital electron populations 1.70129 1.07537 1.28868 1.47636 1.26378 0.96831 1.02101 0.95566 0.84616 0.78222 0.75379 0.78623 1.18055 1.19154 1.19439 1.21762 0.92443 0.81193 1.53646 0.88499 1.83912 1.34663 1.11864 1.80445 1.19170 0.90174 0.87175 0.95989 1.20922 0.93997 0.99000 1.14470 1.17432 0.76956 0.94158 1.01457 1.91427 1.31366 1.97336 1.92228 1.20846 0.95006 0.96279 1.09916 1.20693 0.92904 0.96905 0.96621 1.16894 0.83856 0.90717 1.09680 1.42271 1.05870 1.29800 1.53606 1.16000 0.83444 0.81196 0.78876 1.90852 1.58321 1.47297 1.53041 1.44997 1.03514 1.34235 1.54146 1.21106 0.95782 0.88787 0.87995 0.88700 1.22644 0.91640 0.90317 0.96970 1.86418 1.63779 1.53210 1.35438 1.21292 0.94141 1.01733 0.94437 1.22274 0.96903 1.04246 0.94018 1.23070 1.04589 0.96109 0.98860 1.23018 0.96679 0.97422 1.03600 0.91650 0.84746 0.82381 0.83332 0.75287 0.75963 0.90066 0.95659 0.75786 0.88241 0.90643 0.88723 0.88694 0.89397 0.88369 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.48 13.67 21.61 0.30 -51.18 16 2 C -0.01 -0.49 5.49 84.83 0.47 -0.03 16 3 Si 1.01 41.28 29.55 68.60 2.03 43.31 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 6 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.41 -22.89 9.44 67.92 0.64 -22.25 16 8 H 0.10 5.06 5.30 -2.91 -0.02 5.04 16 9 O -0.20 -11.22 9.30 -22.74 -0.21 -11.43 16 10 C 0.13 6.16 6.66 22.68 0.15 6.31 16 11 C -0.26 -11.76 9.11 22.41 0.20 -11.55 16 12 C 0.12 4.69 7.29 22.37 0.16 4.86 16 13 F -0.14 -5.34 17.26 44.97 0.78 -4.56 16 14 C -0.20 -7.03 10.02 22.33 0.22 -6.80 16 15 C -0.05 -1.89 8.65 22.37 0.19 -1.70 16 16 C 0.08 3.56 6.29 38.22 0.24 3.80 16 17 N -0.67 -25.55 5.21 -316.68 -1.65 -27.20 16 18 C 0.70 24.59 8.26 179.06 1.48 26.07 16 19 O -0.61 -24.16 13.76 -4.02 -0.06 -24.22 16 20 N -0.71 -19.09 4.75 -457.79 -2.18 -21.27 16 21 C 0.17 3.63 2.33 44.99 0.10 3.73 16 22 H 0.10 2.18 7.58 -2.39 -0.02 2.16 16 23 C 0.06 1.32 6.85 71.98 0.49 1.82 16 24 O -0.58 -12.06 12.83 -148.98 -1.91 -13.97 16 25 C -0.08 -1.28 4.75 30.60 0.15 -1.14 16 26 C -0.16 -2.63 5.47 -10.79 -0.06 -2.69 16 27 C -0.19 -3.23 10.18 30.59 0.31 -2.91 16 28 C -0.17 -2.42 10.25 30.59 0.31 -2.11 16 29 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.13 6.11 5.72 -2.91 -0.02 6.10 16 31 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.15 5.25 6.47 -2.91 -0.02 5.23 16 33 H 0.41 15.54 8.56 -92.71 -0.79 14.75 16 34 H 0.41 10.09 8.62 -92.71 -0.80 9.29 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.39 5.23 9.12 -74.06 -0.68 4.55 16 38 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.07 1.35 7.46 -2.39 -0.02 1.34 16 40 H 0.09 1.79 8.07 -2.39 -0.02 1.77 16 41 H 0.09 1.61 8.03 -2.38 -0.02 1.59 16 42 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -68.04 378.85 0.98 -67.06 By element: Atomic # 1 Polarization: 49.24 SS G_CDS: -1.18 Total: 48.06 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 5.07 Total: -4.59 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -3.53 Total: -99.66 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -2.18 Total: -49.62 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.78 Total: -4.56 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -68.04 0.98 -67.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754988322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.139 kcal (2) G-P(sol) polarization free energy of solvation -68.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds