Wall clock time and date at job start Tue Mar 31 2020 20:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86794 * 120.00317 * 2 1 4 4 H 1.48508 * 109.46927 * 240.00214 * 3 2 1 5 5 H 1.48501 * 109.46956 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47443 * 120.00451 * 3 2 1 7 7 C 1.38645 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99439 * 179.97438 * 7 2 1 9 9 O 1.34799 * 119.99887 * 359.97438 * 7 2 1 10 10 C 1.35784 * 117.00231 * 174.97990 * 9 7 2 11 11 C 1.38744 * 120.08175 * 5.19049 * 10 9 7 12 12 C 1.38349 * 119.97561 * 179.97438 * 11 10 9 13 13 F 1.35097 * 119.92381 * 179.97438 * 12 11 10 14 14 C 1.38538 * 120.15141 * 0.02562 * 12 11 10 15 15 C 1.38203 * 120.17686 * 359.74945 * 14 12 11 16 16 C 1.38695 * 120.01574 * 0.50301 * 15 14 12 17 17 N 1.40141 * 120.07296 * 179.76899 * 16 15 14 18 18 C 1.34770 * 120.00072 * 335.23148 * 17 16 15 19 19 O 1.21592 * 120.00111 * 354.33018 * 18 17 16 20 20 N 1.34778 * 120.00320 * 174.32810 * 18 17 16 21 21 C 1.46501 * 120.00468 * 179.97438 * 20 18 17 22 22 H 1.08998 * 109.46515 * 34.99922 * 21 20 18 23 23 C 1.53002 * 109.46907 * 275.00280 * 21 20 18 24 24 O 1.42906 * 109.47239 * 294.99683 * 23 21 20 25 25 C 1.52994 * 109.47113 * 155.00371 * 21 20 18 26 26 C 1.53005 * 109.46976 * 294.99748 * 25 21 20 27 27 C 1.52997 * 117.49787 * 243.62620 * 26 25 21 28 28 C 1.52995 * 117.49718 * 175.00087 * 26 25 21 29 29 H 0.96999 * 119.99654 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.01309 * 359.96618 * 11 10 9 31 31 H 1.07996 * 119.91241 * 180.02562 * 14 12 11 32 32 H 1.07995 * 119.99568 * 180.25135 * 15 14 12 33 33 H 0.97002 * 120.00098 * 155.23110 * 17 16 15 34 34 H 0.97003 * 119.99888 * 0.02562 * 20 18 17 35 35 H 1.09003 * 109.46920 * 175.00020 * 23 21 20 36 36 H 1.08999 * 109.47359 * 54.99823 * 23 21 20 37 37 H 0.96695 * 114.00215 * 180.02562 * 24 23 21 38 38 H 1.08997 * 109.47859 * 54.99959 * 25 21 20 39 39 H 1.09002 * 109.47095 * 175.00067 * 25 21 20 40 40 H 1.09003 * 115.55102 * 29.33526 * 26 25 21 41 41 H 1.08996 * 117.50167 * 359.97438 * 27 26 25 42 42 H 1.09005 * 117.49832 * 145.02414 * 27 26 25 43 43 H 1.08998 * 117.50035 * 214.97994 * 28 26 25 44 44 H 1.08996 * 117.50138 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 3.1035 1.6962 -1.2126 5 1 1.2848 2.7464 -0.0006 6 1 3.1036 1.6963 1.2124 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0702 -3.5046 -0.1069 11 6 3.4560 -3.4393 -0.1010 12 6 4.2031 -4.5987 -0.2090 13 9 5.5525 -4.5339 -0.2036 14 6 3.5706 -5.8259 -0.3237 15 6 2.1905 -5.8987 -0.3257 16 6 1.4345 -4.7404 -0.2231 17 7 0.0350 -4.8124 -0.2298 18 6 -0.5832 -5.8580 -0.8136 19 8 0.0665 -6.6852 -1.4235 20 7 -1.9216 -5.9868 -0.7214 21 6 -2.5937 -7.1231 -1.3565 22 1 -1.9537 -8.0033 -1.2968 23 6 -2.8735 -6.7946 -2.8244 24 8 -3.8048 -5.7134 -2.9015 25 6 -3.9141 -7.4025 -0.6358 26 6 -3.6271 -7.8520 0.7983 27 6 -4.0441 -9.2707 1.1907 28 6 -4.8258 -8.0684 1.7240 29 1 -0.4849 0.8401 0.0004 30 1 3.9515 -2.4837 -0.0122 31 1 4.1576 -6.7286 -0.4074 32 1 1.7005 -6.8573 -0.4112 33 1 -0.4888 -4.1096 0.1858 34 1 -2.4401 -5.3267 -0.2352 35 1 -3.2924 -7.6708 -3.3194 36 1 -1.9438 -6.5091 -3.3165 37 1 -4.0292 -5.4512 -3.8048 38 1 -4.5176 -6.4951 -0.6182 39 1 -4.4556 -8.1889 -1.1615 40 1 -2.7140 -7.4546 1.2417 41 1 -4.5233 -9.8838 0.4275 42 1 -3.4053 -9.8071 1.8925 43 1 -4.7013 -7.8138 2.7765 44 1 -5.8189 -7.8910 1.3113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754988323.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:09 Heat of formation + Delta-G solvation = -98.740976 kcal Electronic energy + Delta-G solvation = -29200.761151 eV Core-core repulsion = 24841.535241 eV Total energy + Delta-G solvation = -4359.225910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.20353 -40.37438 -39.04260 -38.02269 -36.87080 -36.27586 -34.46589 -34.02068 -32.37871 -30.74575 -29.32139 -27.93550 -26.82213 -25.47643 -22.89321 -22.56502 -21.94031 -21.24537 -20.56896 -20.33817 -18.37562 -18.29517 -17.62736 -17.40717 -16.74345 -15.88304 -15.55468 -15.38937 -15.19068 -15.00616 -14.93512 -14.43778 -14.30463 -14.15580 -13.89010 -13.66057 -13.56599 -13.48602 -13.18864 -12.54913 -12.35673 -12.19793 -12.09449 -11.72117 -11.65741 -11.58217 -11.43624 -11.27167 -10.96262 -10.71871 -10.54237 -10.41291 -10.21614 -9.93516 -9.82907 -9.77327 -9.44407 -8.94175 -8.90953 -7.82896 -6.99554 -6.57364 -4.14951 1.90080 2.15987 2.91324 3.08757 3.10058 3.12201 3.46002 3.62213 3.87054 4.22106 4.32259 4.42090 4.51352 4.68365 4.77393 4.88016 4.98342 5.00864 5.12617 5.16601 5.26594 5.29720 5.44302 5.45242 5.57305 5.63256 5.68620 5.77642 5.82220 5.91669 5.97657 6.06367 6.16359 6.25213 6.56429 6.69356 6.71267 6.95013 6.98972 7.10726 7.19503 7.36405 7.53308 7.70705 7.86586 8.30948 8.86121 8.89187 9.49940 10.59746 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.003260 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.783649 B = 8588.026261 C =10172.333775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.171 6.171 10 C 0.153 3.847 11 C -0.256 4.256 12 C 0.122 3.878 13 F -0.153 7.153 14 C -0.224 4.224 15 C -0.064 4.064 16 C 0.086 3.914 17 N -0.663 5.663 18 C 0.704 3.296 19 O -0.588 6.588 20 N -0.732 5.732 21 C 0.173 3.827 22 H 0.101 0.899 23 C 0.060 3.940 24 O -0.568 6.568 25 C -0.091 4.091 26 C -0.153 4.153 27 C -0.182 4.182 28 C -0.181 4.181 29 H 0.272 0.728 30 H 0.142 0.858 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.413 0.587 34 H 0.400 0.600 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.377 0.623 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.814 -13.131 -0.790 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.097 3.903 11 C -0.277 4.277 12 C 0.102 3.898 13 F -0.132 7.132 14 C -0.244 4.244 15 C -0.085 4.085 16 C -0.009 4.009 17 N -0.309 5.309 18 C 0.405 3.595 19 O -0.468 6.468 20 N -0.388 5.388 21 C 0.068 3.932 22 H 0.119 0.881 23 C -0.020 4.020 24 O -0.373 6.373 25 C -0.128 4.128 26 C -0.171 4.171 27 C -0.219 4.219 28 C -0.218 4.218 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.167 0.833 33 H 0.249 0.751 34 H 0.235 0.765 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.224 0.776 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.648 -13.711 -0.652 16.224 hybrid contribution 0.298 1.626 -0.269 1.674 sum -8.350 -12.085 -0.921 14.718 Atomic orbital electron populations 1.70001 1.05902 1.28029 1.45503 1.25266 0.95896 0.98788 0.96229 0.85761 0.78742 0.79528 0.79363 1.19407 1.20217 1.19381 1.21280 0.91921 0.80412 1.53191 0.88922 1.83898 1.33881 1.11233 1.78428 1.18692 0.89485 0.86892 0.95248 1.20821 0.93360 0.98400 1.15138 1.17453 0.75913 0.94391 1.02026 1.91403 1.30191 1.97383 1.94177 1.20489 0.94644 0.95773 1.13539 1.20807 0.92147 0.97589 0.97931 1.16706 0.81295 0.91293 1.11627 1.42259 1.05281 1.24518 1.58833 1.15884 0.81811 0.82305 0.79485 1.90834 1.64371 1.44222 1.47334 1.45060 1.05381 1.29118 1.59197 1.20836 0.93368 0.89226 0.89809 0.88074 1.22716 0.92594 0.89258 0.97384 1.86464 1.64570 1.53628 1.32633 1.21369 0.96352 1.02303 0.92811 1.22379 0.99392 0.99336 0.95983 1.23033 1.03964 0.91054 1.03848 1.22951 0.96389 1.03024 0.99465 0.91829 0.84021 0.86041 0.83332 0.75071 0.76524 0.93158 0.92673 0.77635 0.89942 0.90529 0.87432 0.88904 0.89009 0.88921 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.64 13.67 55.48 0.76 -22.88 16 2 C 0.04 1.13 5.49 -17.51 -0.10 1.03 16 3 Si 0.94 19.85 29.55 -169.99 -5.02 14.83 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.39 -10.43 9.49 30.88 0.29 -10.13 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 9 O -0.17 -4.50 9.17 0.03 0.00 -4.50 16 10 C 0.15 3.56 6.66 -38.94 -0.26 3.30 16 11 C -0.26 -5.67 9.14 -39.35 -0.36 -6.03 16 12 C 0.12 2.48 7.29 -39.43 -0.29 2.19 16 13 F -0.15 -2.97 17.26 2.25 0.04 -2.93 16 14 C -0.22 -4.24 10.02 -39.48 -0.40 -4.64 16 15 C -0.06 -1.25 8.72 -39.43 -0.34 -1.60 16 16 C 0.09 1.81 6.45 -83.44 -0.54 1.27 16 17 N -0.66 -12.40 5.30 -14.07 -0.07 -12.48 16 18 C 0.70 12.10 8.33 -86.92 -0.72 11.38 16 19 O -0.59 -11.41 13.17 5.28 0.07 -11.34 16 20 N -0.73 -9.72 4.46 -58.68 -0.26 -9.98 16 21 C 0.17 1.94 2.35 -67.93 -0.16 1.78 16 22 H 0.10 1.22 7.58 -51.93 -0.39 0.82 16 23 C 0.06 0.65 6.85 37.16 0.25 0.90 16 24 O -0.57 -6.12 12.83 -35.23 -0.45 -6.57 16 25 C -0.09 -0.83 4.75 -26.73 -0.13 -0.95 16 26 C -0.15 -1.42 5.61 -90.62 -0.51 -1.92 16 27 C -0.18 -1.50 10.18 -26.73 -0.27 -1.77 16 28 C -0.18 -1.51 10.25 -26.73 -0.27 -1.78 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.14 3.13 5.63 -52.48 -0.30 2.83 16 31 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 32 H 0.15 2.84 5.78 -52.49 -0.30 2.53 16 33 H 0.41 7.55 8.36 -40.82 -0.34 7.21 16 34 H 0.40 4.90 8.62 -40.82 -0.35 4.55 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.38 2.65 9.12 45.56 0.42 3.06 16 38 H 0.08 0.81 7.73 -51.93 -0.40 0.41 16 39 H 0.08 0.61 7.88 -51.93 -0.41 0.20 16 40 H 0.11 1.15 7.69 -51.93 -0.40 0.75 16 41 H 0.09 0.68 8.03 -51.93 -0.42 0.26 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -30.76 377.02 -7.90 -38.66 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -4.84 Total: 18.47 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -3.80 Total: -6.97 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.42 Total: -45.34 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.38 Total: -22.41 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.76 -7.90 -38.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754988323.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.083 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds