Wall clock time and date at job start Tue Mar 31 2020 20:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86794 * 120.00317 * 2 1 4 4 H 1.48508 * 109.46927 * 240.00214 * 3 2 1 5 5 H 1.48501 * 109.46956 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47443 * 120.00451 * 3 2 1 7 7 C 1.38645 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99439 * 179.97438 * 7 2 1 9 9 O 1.34799 * 119.99887 * 359.97438 * 7 2 1 10 10 C 1.35784 * 117.00231 * 174.97990 * 9 7 2 11 11 C 1.38744 * 120.08175 * 5.19049 * 10 9 7 12 12 C 1.38349 * 119.97561 * 179.97438 * 11 10 9 13 13 F 1.35097 * 119.92381 * 179.97438 * 12 11 10 14 14 C 1.38538 * 120.15141 * 0.02562 * 12 11 10 15 15 C 1.38203 * 120.17686 * 359.74945 * 14 12 11 16 16 C 1.38695 * 120.01574 * 0.50301 * 15 14 12 17 17 N 1.40141 * 120.07296 * 179.76899 * 16 15 14 18 18 C 1.34770 * 120.00072 * 335.23148 * 17 16 15 19 19 O 1.21592 * 120.00111 * 354.33018 * 18 17 16 20 20 N 1.34778 * 120.00320 * 174.32810 * 18 17 16 21 21 C 1.46501 * 120.00468 * 179.97438 * 20 18 17 22 22 H 1.08998 * 109.46515 * 34.99922 * 21 20 18 23 23 C 1.53002 * 109.46907 * 275.00280 * 21 20 18 24 24 O 1.42906 * 109.47239 * 294.99683 * 23 21 20 25 25 C 1.52994 * 109.47113 * 155.00371 * 21 20 18 26 26 C 1.53005 * 109.46976 * 294.99748 * 25 21 20 27 27 C 1.52997 * 117.49787 * 243.62620 * 26 25 21 28 28 C 1.52995 * 117.49718 * 175.00087 * 26 25 21 29 29 H 0.96999 * 119.99654 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.01309 * 359.96618 * 11 10 9 31 31 H 1.07996 * 119.91241 * 180.02562 * 14 12 11 32 32 H 1.07995 * 119.99568 * 180.25135 * 15 14 12 33 33 H 0.97002 * 120.00098 * 155.23110 * 17 16 15 34 34 H 0.97003 * 119.99888 * 0.02562 * 20 18 17 35 35 H 1.09003 * 109.46920 * 175.00020 * 23 21 20 36 36 H 1.08999 * 109.47359 * 54.99823 * 23 21 20 37 37 H 0.96695 * 114.00215 * 180.02562 * 24 23 21 38 38 H 1.08997 * 109.47859 * 54.99959 * 25 21 20 39 39 H 1.09002 * 109.47095 * 175.00067 * 25 21 20 40 40 H 1.09003 * 115.55102 * 29.33526 * 26 25 21 41 41 H 1.08996 * 117.50167 * 359.97438 * 27 26 25 42 42 H 1.09005 * 117.49832 * 145.02414 * 27 26 25 43 43 H 1.08998 * 117.50035 * 214.97994 * 28 26 25 44 44 H 1.08996 * 117.50138 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 3.1035 1.6962 -1.2126 5 1 1.2848 2.7464 -0.0006 6 1 3.1036 1.6963 1.2124 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0702 -3.5046 -0.1069 11 6 3.4560 -3.4393 -0.1010 12 6 4.2031 -4.5987 -0.2090 13 9 5.5525 -4.5339 -0.2036 14 6 3.5706 -5.8259 -0.3237 15 6 2.1905 -5.8987 -0.3257 16 6 1.4345 -4.7404 -0.2231 17 7 0.0350 -4.8124 -0.2298 18 6 -0.5832 -5.8580 -0.8136 19 8 0.0665 -6.6852 -1.4235 20 7 -1.9216 -5.9868 -0.7214 21 6 -2.5937 -7.1231 -1.3565 22 1 -1.9537 -8.0033 -1.2968 23 6 -2.8735 -6.7946 -2.8244 24 8 -3.8048 -5.7134 -2.9015 25 6 -3.9141 -7.4025 -0.6358 26 6 -3.6271 -7.8520 0.7983 27 6 -4.0441 -9.2707 1.1907 28 6 -4.8258 -8.0684 1.7240 29 1 -0.4849 0.8401 0.0004 30 1 3.9515 -2.4837 -0.0122 31 1 4.1576 -6.7286 -0.4074 32 1 1.7005 -6.8573 -0.4112 33 1 -0.4888 -4.1096 0.1858 34 1 -2.4401 -5.3267 -0.2352 35 1 -3.2924 -7.6708 -3.3194 36 1 -1.9438 -6.5091 -3.3165 37 1 -4.0292 -5.4512 -3.8048 38 1 -4.5176 -6.4951 -0.6182 39 1 -4.4556 -8.1889 -1.1615 40 1 -2.7140 -7.4546 1.2417 41 1 -4.5233 -9.8838 0.4275 42 1 -3.4053 -9.8071 1.8925 43 1 -4.7013 -7.8138 2.7765 44 1 -5.8189 -7.8910 1.3113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754988323.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:08 Heat of formation + Delta-G solvation = -119.720064 kcal Electronic energy + Delta-G solvation = -29201.670872 eV Core-core repulsion = 24841.535241 eV Total energy + Delta-G solvation = -4360.135631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.80515 -41.82273 -40.55839 -39.08692 -38.01059 -37.58284 -35.57729 -35.51258 -34.29838 -31.85921 -30.99668 -29.48468 -27.64652 -27.37700 -24.39218 -23.51982 -23.20677 -22.46943 -21.71186 -21.28898 -20.14285 -19.77400 -19.21817 -18.43271 -18.14770 -17.11847 -16.97802 -16.85140 -16.57048 -16.35266 -16.20879 -15.95222 -15.59965 -15.43574 -15.30202 -15.21131 -14.87174 -14.77403 -14.45792 -13.98302 -13.78436 -13.44958 -13.39128 -13.15921 -12.97952 -12.60093 -12.45936 -12.34575 -12.29318 -12.16279 -12.10305 -11.66210 -11.35960 -11.16889 -11.07645 -10.88024 -10.80321 -10.68554 -10.08322 -9.53120 -8.65877 -8.50099 -6.15804 0.23687 0.47543 1.36958 1.45597 1.50846 1.61218 2.03926 2.14775 2.72144 2.93916 3.03378 3.14444 3.23315 3.43306 3.47761 3.60376 3.94008 3.95907 4.10443 4.16634 4.19146 4.35019 4.37211 4.44715 4.50088 4.58754 4.65541 4.77094 4.83300 4.94964 4.97334 5.01417 5.09886 5.13002 5.24049 5.30167 5.30940 5.36141 5.42571 5.54468 5.61283 5.92871 5.96457 6.09969 6.87306 6.94177 6.94585 7.46329 7.64320 8.70387 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.003260 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.783649 B = 8588.026261 C =10172.333775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.009 4.009 3 Si 1.011 2.989 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.417 4.417 8 H 0.099 0.901 9 O -0.205 6.205 10 C 0.125 3.875 11 C -0.261 4.261 12 C 0.116 3.884 13 F -0.145 7.145 14 C -0.199 4.199 15 C -0.064 4.064 16 C 0.087 3.913 17 N -0.667 5.667 18 C 0.704 3.296 19 O -0.609 6.609 20 N -0.717 5.717 21 C 0.168 3.832 22 H 0.095 0.905 23 C 0.064 3.936 24 O -0.581 6.581 25 C -0.077 4.077 26 C -0.166 4.166 27 C -0.177 4.177 28 C -0.179 4.179 29 H 0.274 0.726 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.413 0.587 34 H 0.406 0.594 35 H 0.081 0.919 36 H 0.027 0.973 37 H 0.393 0.607 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.936 -14.597 -1.108 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.208 4.208 3 Si 0.831 3.169 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.492 4.492 8 H 0.116 0.884 9 O -0.110 6.110 10 C 0.072 3.928 11 C -0.282 4.282 12 C 0.095 3.905 13 F -0.124 7.124 14 C -0.219 4.219 15 C -0.085 4.085 16 C -0.009 4.009 17 N -0.313 5.313 18 C 0.405 3.595 19 O -0.490 6.490 20 N -0.372 5.372 21 C 0.063 3.937 22 H 0.113 0.887 23 C -0.015 4.015 24 O -0.389 6.389 25 C -0.114 4.114 26 C -0.184 4.184 27 C -0.214 4.214 28 C -0.216 4.216 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.175 0.825 32 H 0.177 0.823 33 H 0.249 0.751 34 H 0.241 0.759 35 H 0.099 0.901 36 H 0.045 0.955 37 H 0.242 0.758 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.125 0.875 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.793 -15.223 -0.980 17.607 hybrid contribution 0.355 1.816 -0.196 1.861 sum -8.438 -13.407 -1.175 15.885 Atomic orbital electron populations 1.70118 1.07529 1.28983 1.47582 1.26376 0.96828 1.02088 0.95557 0.84748 0.77556 0.74871 0.79755 1.18721 1.19451 1.18324 1.21699 0.92503 0.81151 1.53892 0.88390 1.83879 1.34670 1.11788 1.80700 1.19039 0.90164 0.87011 0.96623 1.20905 0.93252 0.99070 1.14972 1.17442 0.76223 0.94273 1.02518 1.91421 1.29501 1.97355 1.94141 1.20886 0.94526 0.96455 1.09997 1.21003 0.92496 0.97381 0.97633 1.16972 0.82575 0.91029 1.10319 1.42312 1.04652 1.25088 1.59227 1.15981 0.82869 0.81568 0.79118 1.90800 1.65187 1.44798 1.48264 1.45076 1.03995 1.29641 1.58453 1.21071 0.94082 0.88009 0.90491 0.88687 1.22636 0.91726 0.90394 0.96758 1.86423 1.64266 1.53789 1.34374 1.21267 0.94890 1.02659 0.92609 1.22302 0.99294 1.00579 0.96244 1.23117 1.03597 0.90671 1.03971 1.23013 0.96406 1.02851 0.99292 0.91662 0.84641 0.82502 0.82302 0.75142 0.75866 0.90095 0.95472 0.75755 0.90465 0.88512 0.89267 0.87539 0.89045 0.88991 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.44 13.67 21.61 0.30 -51.15 16 2 C -0.01 -0.48 5.49 84.83 0.47 -0.01 16 3 Si 1.01 41.15 29.55 68.60 2.03 43.18 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 7 C -0.42 -22.92 9.49 67.92 0.64 -22.28 16 8 H 0.10 5.06 5.20 -2.91 -0.02 5.04 16 9 O -0.20 -11.24 9.17 -22.80 -0.21 -11.45 16 10 C 0.13 5.99 6.66 22.68 0.15 6.14 16 11 C -0.26 -11.67 9.14 22.42 0.20 -11.46 16 12 C 0.12 4.54 7.29 22.37 0.16 4.71 16 13 F -0.15 -5.39 17.26 44.97 0.78 -4.61 16 14 C -0.20 -7.05 10.02 22.33 0.22 -6.82 16 15 C -0.06 -2.44 8.72 22.37 0.19 -2.25 16 16 C 0.09 3.70 6.45 38.21 0.25 3.94 16 17 N -0.67 -25.50 5.30 -316.70 -1.68 -27.17 16 18 C 0.70 24.28 8.33 179.06 1.49 25.77 16 19 O -0.61 -23.39 13.17 -4.01 -0.05 -23.45 16 20 N -0.72 -18.96 4.46 -457.82 -2.04 -21.00 16 21 C 0.17 3.60 2.35 44.99 0.11 3.70 16 22 H 0.10 2.19 7.58 -2.39 -0.02 2.17 16 23 C 0.06 1.30 6.85 71.98 0.49 1.79 16 24 O -0.58 -11.73 12.83 -148.98 -1.91 -13.64 16 25 C -0.08 -1.26 4.75 30.59 0.15 -1.12 16 26 C -0.17 -2.87 5.61 -10.79 -0.06 -2.93 16 27 C -0.18 -2.57 10.18 30.59 0.31 -2.26 16 28 C -0.18 -2.68 10.25 30.59 0.31 -2.37 16 29 H 0.27 14.41 8.31 -92.71 -0.77 13.63 16 30 H 0.14 6.12 5.63 -2.91 -0.02 6.11 16 31 H 0.16 4.48 8.06 -2.91 -0.02 4.46 16 32 H 0.16 5.80 5.78 -2.91 -0.02 5.78 16 33 H 0.41 15.77 8.36 -92.71 -0.77 14.99 16 34 H 0.41 9.98 8.62 -92.71 -0.80 9.18 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.39 4.97 9.12 -74.06 -0.68 4.29 16 38 H 0.08 1.39 7.73 -2.39 -0.02 1.37 16 39 H 0.10 1.24 7.88 -2.39 -0.02 1.22 16 40 H 0.09 1.88 7.69 -2.39 -0.02 1.86 16 41 H 0.11 1.26 8.03 -2.39 -0.02 1.24 16 42 H 0.09 1.33 8.14 -2.38 -0.02 1.32 16 43 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -67.40 377.02 1.14 -66.26 By element: Atomic # 1 Polarization: 49.65 SS G_CDS: -1.16 Total: 48.49 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 5.10 Total: -5.45 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -3.42 Total: -99.33 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -2.17 Total: -48.54 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.78 Total: -4.61 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -67.40 1.14 -66.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754988323.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.457 kcal (2) G-P(sol) polarization free energy of solvation -67.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds