Wall clock time and date at job start Tue Mar 31 2020 20:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86800 * 120.00228 * 2 1 4 4 H 1.48499 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46903 * 300.00211 * 3 2 1 6 6 H 1.48503 * 109.46845 * 59.99634 * 3 2 1 7 7 C 1.38640 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99586 * 180.02562 * 7 2 1 9 9 O 1.34801 * 120.00368 * 359.97438 * 7 2 1 10 10 C 1.35781 * 117.00068 * 174.97726 * 9 7 2 11 11 C 1.38733 * 120.08578 * 5.20061 * 10 9 7 12 12 C 1.38345 * 119.97729 * 179.72264 * 11 10 9 13 13 F 1.35100 * 119.92642 * 180.27913 * 12 11 10 14 14 C 1.38540 * 120.14937 * 0.29759 * 12 11 10 15 15 C 1.38194 * 120.17855 * 0.02562 * 14 12 11 16 16 C 1.38695 * 120.01705 * 359.95729 * 15 14 12 17 17 N 1.40138 * 120.07572 * 180.02562 * 16 15 14 18 18 C 1.34781 * 119.99960 * 24.76709 * 17 16 15 19 19 O 1.21595 * 119.99544 * 5.66888 * 18 17 16 20 20 N 1.34779 * 120.00224 * 185.66893 * 18 17 16 21 21 C 1.46491 * 120.00177 * 179.97438 * 20 18 17 22 22 C 1.52994 * 109.47258 * 180.02562 * 21 20 18 23 23 H 1.08998 * 109.48391 * 60.02476 * 22 21 20 24 24 C 1.53095 * 109.48461 * 180.02562 * 22 21 20 25 25 C 1.53175 * 109.16685 * 177.59075 * 24 22 21 26 26 C 1.53182 * 109.03540 * 303.01978 * 25 24 22 27 27 C 1.53086 * 109.16246 * 56.97979 * 26 25 24 28 28 O 1.42904 * 109.47962 * 300.00285 * 22 21 20 29 29 H 0.96995 * 119.99672 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.01578 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.91374 * 179.97438 * 14 12 11 32 32 H 1.07994 * 119.99556 * 179.97438 * 15 14 12 33 33 H 0.96994 * 120.00293 * 204.76946 * 17 16 15 34 34 H 0.97001 * 119.99542 * 0.02562 * 20 18 17 35 35 H 1.09004 * 109.47762 * 300.00695 * 21 20 18 36 36 H 1.09007 * 109.47086 * 60.00549 * 21 20 18 37 37 H 1.09002 * 109.52042 * 297.49811 * 24 22 21 38 38 H 1.09003 * 109.52370 * 57.68251 * 24 22 21 39 39 H 1.09004 * 109.54483 * 183.15077 * 25 24 22 40 40 H 1.08994 * 109.61344 * 62.92952 * 25 24 22 41 41 H 1.09004 * 109.51947 * 297.07421 * 26 25 24 42 42 H 1.08999 * 109.51672 * 176.88832 * 26 25 24 43 43 H 1.08998 * 109.47960 * 182.40984 * 27 26 25 44 44 H 1.09001 * 109.47937 * 62.37517 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3463 -0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3681 0.0016 10 6 2.0703 -3.5046 -0.1039 11 6 3.4560 -3.4394 -0.0978 12 6 4.2031 -4.5993 -0.1996 13 9 5.5526 -4.5350 -0.1879 14 6 3.5706 -5.8266 -0.3139 15 6 2.1906 -5.8983 -0.3273 16 6 1.4346 -4.7400 -0.2253 17 7 0.0351 -4.8114 -0.2382 18 6 -0.5855 -5.9441 0.1468 19 8 0.0618 -6.8671 0.6025 20 7 -1.9234 -6.0538 0.0268 21 6 -2.5979 -7.2852 0.4448 22 6 -4.1026 -7.1497 0.2038 23 1 -4.2868 -6.9770 -0.8566 24 6 -4.8078 -8.4362 0.6411 25 6 -6.3189 -8.2703 0.4530 26 6 -6.7904 -7.0495 1.2492 27 6 -6.0087 -5.8166 0.7883 28 8 -4.6092 -6.0486 0.9609 29 1 -0.4849 0.8400 -0.0004 30 1 3.9515 -2.4837 -0.0096 31 1 4.1576 -6.7297 -0.3935 32 1 1.7007 -6.8565 -0.4169 33 1 -0.4870 -4.0456 -0.5243 34 1 -2.4396 -5.3176 -0.3371 35 1 -2.2119 -8.1251 -0.1330 36 1 -2.4136 -7.4585 1.5051 37 1 -4.4545 -9.2697 0.0340 38 1 -4.5907 -8.6317 1.6913 39 1 -6.8314 -9.1617 0.8148 40 1 -6.5422 -8.1249 -0.6038 41 1 -6.6133 -7.2170 2.3116 42 1 -7.8550 -6.8914 1.0768 43 1 -6.3097 -4.9528 1.3811 44 1 -6.2180 -5.6260 -0.2643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761654778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:36 Heat of formation + Delta-G solvation = -125.971819 kcal Electronic energy + Delta-G solvation = -28853.438667 eV Core-core repulsion = 24493.031940 eV Total energy + Delta-G solvation = -4360.406728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.18494 -40.32275 -39.65301 -38.64760 -36.39964 -34.82733 -34.00531 -33.92406 -32.36676 -31.68248 -29.35595 -28.42566 -26.79083 -25.46000 -24.43039 -22.81951 -22.14536 -21.52393 -20.78230 -20.22918 -18.33147 -18.17196 -17.65868 -16.82198 -16.67884 -16.16095 -15.51362 -15.31865 -15.17459 -14.95998 -14.78679 -14.76994 -14.67162 -14.24623 -14.03805 -13.62725 -13.50571 -13.34196 -13.12841 -13.00735 -12.82068 -12.43452 -12.24304 -12.11799 -11.62614 -11.60576 -11.43214 -11.35090 -11.03847 -10.96609 -10.70283 -10.60301 -10.49789 -9.85931 -9.73274 -9.72624 -9.42994 -8.93859 -8.91946 -7.80664 -6.98352 -6.56659 -4.14119 1.92035 2.17824 2.91356 3.07899 3.10361 3.15702 3.44317 3.52300 3.87964 4.33558 4.42717 4.44602 4.50065 4.56046 4.73188 4.84794 4.87985 4.91887 5.00286 5.12177 5.17545 5.26734 5.38085 5.44322 5.50156 5.58391 5.62484 5.67553 5.73080 5.79140 5.80774 5.96010 6.08097 6.26286 6.53381 6.68415 6.71959 6.96676 6.97323 7.00770 7.12716 7.20804 7.36878 7.72537 7.87812 8.32105 8.87512 8.90394 9.51627 10.60587 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.002920 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.208228 B = 9585.788705 C =12119.386981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.391 4.391 8 H 0.095 0.905 9 O -0.171 6.171 10 C 0.153 3.847 11 C -0.255 4.255 12 C 0.122 3.878 13 F -0.153 7.153 14 C -0.224 4.224 15 C -0.064 4.064 16 C 0.086 3.914 17 N -0.663 5.663 18 C 0.704 3.296 19 O -0.587 6.587 20 N -0.741 5.741 21 C 0.150 3.850 22 C 0.078 3.922 23 H 0.065 0.935 24 C -0.148 4.148 25 C -0.121 4.121 26 C -0.158 4.158 27 C 0.060 3.940 28 O -0.372 6.372 29 H 0.271 0.729 30 H 0.143 0.857 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.414 0.586 34 H 0.401 0.599 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.189 -12.655 -1.661 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.112 0.888 9 O -0.074 6.074 10 C 0.097 3.903 11 C -0.276 4.276 12 C 0.102 3.898 13 F -0.132 7.132 14 C -0.244 4.244 15 C -0.084 4.084 16 C -0.010 4.010 17 N -0.309 5.309 18 C 0.405 3.595 19 O -0.466 6.466 20 N -0.397 5.397 21 C 0.026 3.974 22 C 0.020 3.980 23 H 0.083 0.917 24 C -0.186 4.186 25 C -0.159 4.159 26 C -0.196 4.196 27 C -0.017 4.017 28 O -0.291 6.291 29 H 0.080 0.920 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.167 0.833 33 H 0.250 0.750 34 H 0.236 0.764 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.938 -13.168 -1.109 17.808 hybrid contribution -0.024 1.496 -0.358 1.538 sum -11.962 -11.672 -1.466 16.777 Atomic orbital electron populations 1.70023 1.05898 1.27783 1.45783 1.25274 0.95903 0.98801 0.96283 0.85623 0.79289 0.80146 0.78295 1.18978 1.20080 1.20083 1.21388 0.91993 0.80420 1.52870 0.88807 1.83916 1.33891 1.11244 1.78387 1.18724 0.89498 0.87146 0.94963 1.20822 0.93347 0.98399 1.15057 1.17451 0.75914 0.94350 1.02090 1.91404 1.30185 1.97386 1.94177 1.20491 0.94627 0.95736 1.13541 1.20806 0.92158 0.97708 0.97760 1.16724 0.81249 0.91732 1.11257 1.42249 1.05306 1.15363 1.68000 1.15844 0.81674 0.83212 0.78784 1.90842 1.64440 1.39835 1.51451 1.44910 1.05691 1.19296 1.69763 1.21179 0.88090 0.86705 1.01457 1.22373 0.93043 0.87223 0.95393 0.91697 1.22125 0.95626 0.97630 1.03224 1.21572 0.95475 0.98416 1.00431 1.22209 1.00263 0.95886 1.01201 1.22586 0.81097 0.97419 1.00578 1.88036 1.23016 1.49515 1.68513 0.91955 0.83995 0.86011 0.83338 0.75036 0.76435 0.90182 0.90835 0.90431 0.90506 0.91328 0.91770 0.90939 0.90938 0.88656 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.66 13.67 55.48 0.76 -22.90 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 3 Si 0.94 19.91 29.55 -169.99 -5.02 14.88 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.39 -10.42 9.49 30.88 0.29 -10.12 16 8 H 0.09 2.36 5.20 -52.48 -0.27 2.09 16 9 O -0.17 -4.53 9.18 0.04 0.00 -4.53 16 10 C 0.15 3.59 6.66 -38.94 -0.26 3.33 16 11 C -0.26 -5.69 9.14 -39.36 -0.36 -6.05 16 12 C 0.12 2.50 7.29 -39.43 -0.29 2.21 16 13 F -0.15 -2.99 17.26 2.25 0.04 -2.95 16 14 C -0.22 -4.28 10.02 -39.49 -0.40 -4.67 16 15 C -0.06 -1.27 8.71 -39.43 -0.34 -1.61 16 16 C 0.09 1.83 6.45 -83.44 -0.54 1.29 16 17 N -0.66 -12.69 5.29 -14.07 -0.07 -12.76 16 18 C 0.70 12.59 8.37 -86.91 -0.73 11.86 16 19 O -0.59 -11.91 13.51 5.28 0.07 -11.83 16 20 N -0.74 -10.23 5.45 -65.23 -0.36 -10.59 16 21 C 0.15 1.73 5.37 -4.05 -0.02 1.71 16 22 C 0.08 0.72 2.73 -26.69 -0.07 0.64 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 C -0.15 -1.08 5.42 -26.59 -0.14 -1.22 16 25 C -0.12 -0.77 6.03 -26.55 -0.16 -0.93 16 26 C -0.16 -1.07 6.14 -26.59 -0.16 -1.23 16 27 C 0.06 0.49 6.84 37.20 0.25 0.75 16 28 O -0.37 -4.09 10.15 -35.23 -0.36 -4.45 16 29 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.14 3.16 5.63 -52.48 -0.30 2.86 16 31 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.15 2.89 5.78 -52.49 -0.30 2.58 16 33 H 0.41 7.68 8.37 -40.82 -0.34 7.34 16 34 H 0.40 4.97 8.37 -40.82 -0.34 4.63 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -30.96 368.84 -8.17 -39.13 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -5.76 Total: 13.50 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -3.02 Total: -3.05 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.33 Total: -46.25 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.29 Total: -20.81 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.96 -8.17 -39.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761654778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.847 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds