Wall clock time and date at job start Tue Mar 31 2020 20:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86800 * 120.00228 * 2 1 4 4 H 1.48499 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46903 * 300.00211 * 3 2 1 6 6 H 1.48503 * 109.46845 * 59.99634 * 3 2 1 7 7 C 1.38640 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99586 * 180.02562 * 7 2 1 9 9 O 1.34801 * 120.00368 * 359.97438 * 7 2 1 10 10 C 1.35781 * 117.00068 * 174.97726 * 9 7 2 11 11 C 1.38733 * 120.08578 * 5.20061 * 10 9 7 12 12 C 1.38345 * 119.97729 * 179.72264 * 11 10 9 13 13 F 1.35100 * 119.92642 * 180.27913 * 12 11 10 14 14 C 1.38540 * 120.14937 * 0.29759 * 12 11 10 15 15 C 1.38194 * 120.17855 * 0.02562 * 14 12 11 16 16 C 1.38695 * 120.01705 * 359.95729 * 15 14 12 17 17 N 1.40138 * 120.07572 * 180.02562 * 16 15 14 18 18 C 1.34781 * 119.99960 * 24.76709 * 17 16 15 19 19 O 1.21595 * 119.99544 * 5.66888 * 18 17 16 20 20 N 1.34779 * 120.00224 * 185.66893 * 18 17 16 21 21 C 1.46491 * 120.00177 * 179.97438 * 20 18 17 22 22 C 1.52994 * 109.47258 * 180.02562 * 21 20 18 23 23 H 1.08998 * 109.48391 * 60.02476 * 22 21 20 24 24 C 1.53095 * 109.48461 * 180.02562 * 22 21 20 25 25 C 1.53175 * 109.16685 * 177.59075 * 24 22 21 26 26 C 1.53182 * 109.03540 * 303.01978 * 25 24 22 27 27 C 1.53086 * 109.16246 * 56.97979 * 26 25 24 28 28 O 1.42904 * 109.47962 * 300.00285 * 22 21 20 29 29 H 0.96995 * 119.99672 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.01578 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.91374 * 179.97438 * 14 12 11 32 32 H 1.07994 * 119.99556 * 179.97438 * 15 14 12 33 33 H 0.96994 * 120.00293 * 204.76946 * 17 16 15 34 34 H 0.97001 * 119.99542 * 0.02562 * 20 18 17 35 35 H 1.09004 * 109.47762 * 300.00695 * 21 20 18 36 36 H 1.09007 * 109.47086 * 60.00549 * 21 20 18 37 37 H 1.09002 * 109.52042 * 297.49811 * 24 22 21 38 38 H 1.09003 * 109.52370 * 57.68251 * 24 22 21 39 39 H 1.09004 * 109.54483 * 183.15077 * 25 24 22 40 40 H 1.08994 * 109.61344 * 62.92952 * 25 24 22 41 41 H 1.09004 * 109.51947 * 297.07421 * 26 25 24 42 42 H 1.08999 * 109.51672 * 176.88832 * 26 25 24 43 43 H 1.08998 * 109.47960 * 182.40984 * 27 26 25 44 44 H 1.09001 * 109.47937 * 62.37517 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3463 -0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3681 0.0016 10 6 2.0703 -3.5046 -0.1039 11 6 3.4560 -3.4394 -0.0978 12 6 4.2031 -4.5993 -0.1996 13 9 5.5526 -4.5350 -0.1879 14 6 3.5706 -5.8266 -0.3139 15 6 2.1906 -5.8983 -0.3273 16 6 1.4346 -4.7400 -0.2253 17 7 0.0351 -4.8114 -0.2382 18 6 -0.5855 -5.9441 0.1468 19 8 0.0618 -6.8671 0.6025 20 7 -1.9234 -6.0538 0.0268 21 6 -2.5979 -7.2852 0.4448 22 6 -4.1026 -7.1497 0.2038 23 1 -4.2868 -6.9770 -0.8566 24 6 -4.8078 -8.4362 0.6411 25 6 -6.3189 -8.2703 0.4530 26 6 -6.7904 -7.0495 1.2492 27 6 -6.0087 -5.8166 0.7883 28 8 -4.6092 -6.0486 0.9609 29 1 -0.4849 0.8400 -0.0004 30 1 3.9515 -2.4837 -0.0096 31 1 4.1576 -6.7297 -0.3935 32 1 1.7007 -6.8565 -0.4169 33 1 -0.4870 -4.0456 -0.5243 34 1 -2.4396 -5.3176 -0.3371 35 1 -2.2119 -8.1251 -0.1330 36 1 -2.4136 -7.4585 1.5051 37 1 -4.4545 -9.2697 0.0340 38 1 -4.5907 -8.6317 1.6913 39 1 -6.8314 -9.1617 0.8148 40 1 -6.5422 -8.1249 -0.6038 41 1 -6.6133 -7.2170 2.3116 42 1 -7.8550 -6.8914 1.0768 43 1 -6.3097 -4.9528 1.3811 44 1 -6.2180 -5.6260 -0.2643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761654778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:35 Heat of formation + Delta-G solvation = -146.071247 kcal Electronic energy + Delta-G solvation = -28854.310244 eV Core-core repulsion = 24493.031940 eV Total energy + Delta-G solvation = -4361.278304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.79822 -41.78808 -40.64275 -40.11487 -38.09753 -35.99919 -35.56019 -34.56026 -34.29322 -32.55754 -31.04950 -29.92608 -27.79588 -27.33168 -25.13319 -24.18590 -23.44617 -22.90612 -21.96672 -21.11136 -20.14459 -19.69042 -19.23386 -18.33524 -17.53132 -17.15714 -16.92010 -16.83354 -16.56145 -16.46490 -16.21903 -15.92888 -15.66484 -15.42044 -15.36937 -15.22161 -15.11202 -14.87237 -14.14062 -13.99368 -13.91895 -13.72024 -13.56067 -13.40518 -13.15212 -13.01491 -12.61177 -12.34191 -12.21479 -12.12165 -11.97466 -11.63689 -11.63467 -11.38454 -11.23936 -11.03816 -10.82149 -10.40291 -10.15687 -9.52276 -8.66730 -8.49637 -6.15572 0.23958 0.48113 1.37716 1.43503 1.53827 1.58893 2.02357 2.15040 2.71789 2.74859 3.07086 3.13495 3.21948 3.47928 3.70122 3.92166 3.94662 3.96418 4.05409 4.15327 4.17521 4.26246 4.37900 4.49302 4.57543 4.63590 4.69392 4.78511 4.88386 4.93727 4.97554 5.01638 5.07977 5.15273 5.20915 5.24277 5.29794 5.34017 5.40660 5.46841 5.57394 5.91469 5.95839 6.09740 6.28595 6.92076 6.94868 7.43715 7.64776 8.71007 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.002920 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.208228 B = 9585.788705 C =12119.386981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.010 4.010 3 Si 1.012 2.988 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.415 4.415 8 H 0.099 0.901 9 O -0.205 6.205 10 C 0.125 3.875 11 C -0.260 4.260 12 C 0.116 3.884 13 F -0.145 7.145 14 C -0.199 4.199 15 C -0.064 4.064 16 C 0.085 3.915 17 N -0.666 5.666 18 C 0.702 3.298 19 O -0.610 6.610 20 N -0.726 5.726 21 C 0.147 3.853 22 C 0.082 3.918 23 H 0.078 0.922 24 C -0.145 4.145 25 C -0.120 4.120 26 C -0.155 4.155 27 C 0.053 3.947 28 O -0.401 6.401 29 H 0.274 0.726 30 H 0.136 0.864 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.414 0.586 34 H 0.409 0.591 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.267 -14.021 -2.272 18.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.490 4.490 8 H 0.116 0.884 9 O -0.110 6.110 10 C 0.072 3.928 11 C -0.281 4.281 12 C 0.096 3.904 13 F -0.124 7.124 14 C -0.218 4.218 15 C -0.085 4.085 16 C -0.011 4.011 17 N -0.312 5.312 18 C 0.403 3.597 19 O -0.491 6.491 20 N -0.381 5.381 21 C 0.024 3.976 22 C 0.024 3.976 23 H 0.096 0.904 24 C -0.183 4.183 25 C -0.157 4.157 26 C -0.193 4.193 27 C -0.023 4.023 28 O -0.321 6.321 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.176 0.824 32 H 0.177 0.823 33 H 0.250 0.750 34 H 0.245 0.755 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.041 -14.579 -1.727 18.988 hybrid contribution 0.021 1.680 -0.165 1.688 sum -12.021 -12.899 -1.892 17.733 Atomic orbital electron populations 1.70132 1.07523 1.28853 1.47749 1.26384 0.96846 1.02098 0.95605 0.84608 0.78222 0.75365 0.78580 1.18044 1.19171 1.19506 1.21784 0.92519 0.81127 1.53618 0.88357 1.83895 1.34698 1.11815 1.80615 1.19066 0.90188 0.87276 0.96317 1.20898 0.93219 0.99065 1.14918 1.17441 0.76228 0.94225 1.02499 1.91423 1.29484 1.97357 1.94130 1.20888 0.94485 0.96440 1.10016 1.21004 0.92535 0.97468 0.97465 1.16991 0.82488 0.91495 1.10096 1.42289 1.04721 1.15919 1.68266 1.15963 0.82760 0.82419 0.78536 1.90808 1.65323 1.40411 1.52606 1.44918 1.04298 1.20369 1.68492 1.21388 0.89718 0.85898 1.00628 1.22384 0.91334 0.87903 0.95944 0.90398 1.22120 0.96336 0.96958 1.02924 1.21588 0.94568 0.98596 1.00945 1.22187 1.00987 0.95442 1.00659 1.22751 0.80014 0.98246 1.01306 1.87988 1.24659 1.50303 1.69165 0.91663 0.84635 0.82421 0.82309 0.75025 0.75533 0.88956 0.92409 0.88874 0.91403 0.90135 0.90857 0.91894 0.89316 0.88766 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.39 13.67 21.61 0.30 -51.09 16 2 C -0.01 -0.53 5.49 84.83 0.47 -0.06 16 3 Si 1.01 41.22 29.55 68.60 2.03 43.25 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.41 -22.83 9.49 67.92 0.64 -22.18 16 8 H 0.10 5.10 5.20 -2.91 -0.02 5.09 16 9 O -0.20 -11.28 9.18 -22.79 -0.21 -11.49 16 10 C 0.13 6.02 6.66 22.68 0.15 6.17 16 11 C -0.26 -11.68 9.14 22.41 0.20 -11.47 16 12 C 0.12 4.59 7.29 22.37 0.16 4.75 16 13 F -0.15 -5.40 17.26 44.97 0.78 -4.62 16 14 C -0.20 -7.08 10.02 22.33 0.22 -6.86 16 15 C -0.06 -2.45 8.71 22.37 0.19 -2.26 16 16 C 0.09 3.66 6.45 38.22 0.25 3.91 16 17 N -0.67 -25.82 5.29 -316.68 -1.68 -27.50 16 18 C 0.70 24.97 8.37 179.05 1.50 26.47 16 19 O -0.61 -24.36 13.51 -4.02 -0.05 -24.42 16 20 N -0.73 -19.77 5.45 -478.54 -2.61 -22.38 16 21 C 0.15 3.27 5.37 86.38 0.46 3.73 16 22 C 0.08 1.41 2.73 30.62 0.08 1.49 16 23 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 24 C -0.15 -1.87 5.42 30.68 0.17 -1.70 16 25 C -0.12 -1.24 6.03 30.71 0.19 -1.06 16 26 C -0.16 -1.86 6.14 30.68 0.19 -1.67 16 27 C 0.05 0.82 6.84 72.01 0.49 1.32 16 28 O -0.40 -8.62 10.15 -148.98 -1.51 -10.13 16 29 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.14 6.16 5.63 -2.91 -0.02 6.15 16 31 H 0.16 4.52 8.06 -2.91 -0.02 4.50 16 32 H 0.16 5.86 5.78 -2.91 -0.02 5.85 16 33 H 0.41 15.92 8.37 -92.71 -0.78 15.14 16 34 H 0.41 10.04 8.37 -92.71 -0.78 9.27 16 35 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -67.69 368.84 1.92 -65.77 By element: Atomic # 1 Polarization: 42.53 SS G_CDS: -0.49 Total: 42.04 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 5.37 Total: 0.58 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -3.99 Total: -100.98 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -1.78 Total: -46.04 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.78 Total: -4.62 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -67.69 1.92 -65.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761654778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.301 kcal (2) G-P(sol) polarization free energy of solvation -67.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds