Wall clock time and date at job start Tue Mar 31 2020 20:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86790 * 120.00294 * 2 1 4 4 H 1.48497 * 109.47502 * 270.00414 * 3 2 1 5 5 H 1.48506 * 109.46979 * 30.00356 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99878 * 3 2 1 7 7 C 1.38639 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99377 * 179.97438 * 7 2 1 9 9 O 1.34807 * 120.00165 * 0.02562 * 7 2 1 10 10 C 1.35786 * 116.99654 * 174.95438 * 9 7 2 11 11 C 1.38731 * 120.08929 * 5.43069 * 10 9 7 12 12 C 1.38349 * 119.97603 * 180.02562 * 11 10 9 13 13 F 1.35097 * 119.92350 * 179.97438 * 12 11 10 14 14 C 1.38538 * 120.14922 * 0.02562 * 12 11 10 15 15 C 1.38201 * 120.17642 * 359.74701 * 14 12 11 16 16 C 1.38688 * 120.01947 * 0.50459 * 15 14 12 17 17 N 1.40138 * 120.07459 * 179.77407 * 16 15 14 18 18 C 1.34771 * 119.99913 * 34.59208 * 17 16 15 19 19 O 1.21589 * 120.00359 * 355.63085 * 18 17 16 20 20 N 1.34781 * 119.99916 * 175.35650 * 18 17 16 21 21 C 1.46501 * 120.00332 * 180.27831 * 20 18 17 22 22 H 1.08996 * 109.46560 * 325.00026 * 21 20 18 23 23 C 1.52997 * 109.47101 * 205.00053 * 21 20 18 24 24 C 1.52997 * 109.47418 * 64.99741 * 23 21 20 25 25 O 1.42897 * 109.47415 * 179.97438 * 24 23 21 26 26 C 1.53000 * 109.47149 * 84.99491 * 21 20 18 27 27 C 1.53003 * 117.49656 * 8.75295 * 26 21 20 28 28 C 1.52999 * 117.50054 * 300.09256 * 26 21 20 29 29 H 0.96998 * 119.99950 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.01465 * 0.02562 * 11 10 9 31 31 H 1.08000 * 119.91074 * 179.97438 * 14 12 11 32 32 H 1.08003 * 119.98539 * 180.27629 * 15 14 12 33 33 H 0.96998 * 119.99918 * 214.59760 * 17 16 15 34 34 H 0.97005 * 120.00008 * 0.27703 * 20 18 17 35 35 H 1.09005 * 109.46670 * 184.99801 * 23 21 20 36 36 H 1.08996 * 109.46967 * 304.99714 * 23 21 20 37 37 H 1.09001 * 109.47244 * 300.00203 * 24 23 21 38 38 H 1.09004 * 109.46821 * 59.99994 * 24 23 21 39 39 H 0.96700 * 114.00564 * 179.97438 * 25 24 23 40 40 H 1.08997 * 115.54487 * 154.41740 * 26 21 20 41 41 H 1.09000 * 117.49973 * 359.97438 * 27 26 21 42 42 H 1.09004 * 117.49449 * 145.02307 * 27 26 21 43 43 H 1.09000 * 117.49627 * 214.98017 * 28 26 21 44 44 H 1.08997 * 117.49694 * 359.97370 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4473 2.6526 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3348 -2.3681 -0.0016 10 6 2.0703 -3.5045 -0.1085 11 6 3.4561 -3.4397 -0.0969 12 6 4.2032 -4.5989 -0.2065 13 9 5.5526 -4.5346 -0.1957 14 6 3.5707 -5.8255 -0.3284 15 6 2.1906 -5.8977 -0.3359 16 6 1.4347 -4.7397 -0.2317 17 7 0.0351 -4.8112 -0.2439 18 6 -0.5909 -5.8621 0.3218 19 8 0.0585 -6.7862 0.7720 20 7 -1.9366 -5.8861 0.3934 21 6 -2.6169 -7.0257 1.0138 22 1 -2.0637 -7.9399 0.7988 23 6 -4.0342 -7.1424 0.4494 24 6 -3.9634 -7.4762 -1.0420 25 8 -5.2871 -7.5859 -1.5690 26 6 -2.6864 -6.8156 2.5277 27 6 -2.2606 -5.4504 3.0717 28 6 -1.3633 -6.6726 3.2825 29 1 -0.4850 0.8400 0.0004 30 1 3.9515 -2.4847 -0.0024 31 1 4.1578 -6.7279 -0.4141 32 1 1.7008 -6.8560 -0.4266 33 1 -0.4830 -4.1043 -0.6596 34 1 -2.4546 -5.1489 0.0341 35 1 -4.5700 -7.9336 0.9738 36 1 -4.5585 -6.1966 0.5855 37 1 -3.4275 -6.6851 -1.5665 38 1 -3.4391 -8.4221 -1.1781 39 1 -5.3188 -7.7961 -2.5123 40 1 -3.5032 -7.3276 3.0362 41 1 -1.9306 -4.7021 2.3512 42 1 -2.7971 -5.0646 3.9386 43 1 -1.3098 -7.0902 4.2879 44 1 -0.4433 -6.7285 2.7007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761662537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:14 Heat of formation + Delta-G solvation = -94.669544 kcal Electronic energy + Delta-G solvation = -29663.332265 eV Core-core repulsion = 25304.282906 eV Total energy + Delta-G solvation = -4359.049359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.25391 -40.58887 -39.17416 -37.77974 -36.90217 -36.21962 -34.22730 -33.97579 -32.42283 -31.48671 -29.39932 -28.17211 -26.17928 -25.50343 -22.72251 -22.32468 -21.85435 -21.66026 -20.71345 -19.96267 -18.40079 -18.30314 -17.81628 -17.42777 -16.70939 -16.25000 -15.82572 -15.33306 -15.24269 -14.99217 -14.91452 -14.51851 -14.34057 -14.25704 -13.96964 -13.62035 -13.51203 -13.27228 -13.14103 -12.48871 -12.35520 -12.16933 -11.93599 -11.84222 -11.67669 -11.40300 -11.39150 -11.16610 -10.94007 -10.74082 -10.55847 -10.22698 -10.17846 -9.92293 -9.82040 -9.77307 -9.43865 -8.97708 -8.91603 -7.88264 -7.11648 -6.62060 -4.19809 1.84651 2.11943 2.84076 3.05251 3.06910 3.11160 3.40992 3.78227 3.83777 4.04320 4.34280 4.43640 4.76517 4.80460 4.85471 4.89238 4.94703 5.10610 5.11555 5.13474 5.22870 5.42249 5.46970 5.54647 5.58467 5.73576 5.75482 5.90899 5.94652 6.01561 6.06199 6.18322 6.32241 6.49887 6.60792 6.63311 6.69059 6.90671 6.92640 7.06852 7.13598 7.29288 7.35951 7.65698 7.82233 8.23380 8.81688 8.85019 9.45465 10.54918 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009609 B = 0.003598 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.228352 B = 7781.171960 C = 9274.895620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.044 3.956 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.168 6.168 10 C 0.157 3.843 11 C -0.259 4.259 12 C 0.128 3.872 13 F -0.152 7.152 14 C -0.229 4.229 15 C -0.050 4.050 16 C 0.077 3.923 17 N -0.664 5.664 18 C 0.706 3.294 19 O -0.580 6.580 20 N -0.741 5.741 21 C 0.200 3.800 22 H 0.094 0.906 23 C -0.123 4.123 24 C 0.075 3.925 25 O -0.577 6.577 26 C -0.174 4.174 27 C -0.173 4.173 28 C -0.181 4.181 29 H 0.272 0.728 30 H 0.142 0.858 31 H 0.122 0.878 32 H 0.143 0.857 33 H 0.410 0.590 34 H 0.398 0.602 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.380 0.620 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 -11.375 -1.148 13.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.161 4.161 3 Si 0.766 3.234 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.071 6.071 10 C 0.101 3.899 11 C -0.280 4.280 12 C 0.108 3.892 13 F -0.131 7.131 14 C -0.249 4.249 15 C -0.070 4.070 16 C -0.018 4.018 17 N -0.311 5.311 18 C 0.407 3.593 19 O -0.459 6.459 20 N -0.397 5.397 21 C 0.094 3.906 22 H 0.112 0.888 23 C -0.161 4.161 24 C -0.003 4.003 25 O -0.382 6.382 26 C -0.194 4.194 27 C -0.210 4.210 28 C -0.218 4.218 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.161 0.839 33 H 0.246 0.754 34 H 0.233 0.767 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.227 0.773 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.858 -11.840 -0.075 13.683 hybrid contribution 0.418 1.566 -0.766 1.792 sum -6.440 -10.274 -0.841 12.155 Atomic orbital electron populations 1.70006 1.05917 1.27966 1.45488 1.25266 0.95896 0.98813 0.96160 0.85691 0.79058 0.79808 0.78855 1.19750 1.20176 1.19055 1.21348 0.91981 0.80447 1.53068 0.88863 1.83933 1.33872 1.11251 1.78016 1.18823 0.89469 0.87306 0.94295 1.20844 0.93439 0.98431 1.15248 1.17464 0.75929 0.94356 1.01424 1.91409 1.30179 1.97380 1.94101 1.20485 0.94663 0.95787 1.13986 1.20667 0.92094 0.97416 0.96848 1.16632 0.81209 0.91540 1.12383 1.42206 1.05257 1.24271 1.59329 1.15868 0.81783 0.83081 0.78592 1.90811 1.64595 1.37001 1.53470 1.45246 1.04982 1.24517 1.64996 1.20173 0.91308 0.89410 0.89668 0.88818 1.21757 0.96157 1.03810 0.94400 1.22192 0.83598 0.99921 0.94591 1.86446 1.28218 1.94400 1.29178 1.22714 0.99817 1.02146 0.94710 1.22927 1.03953 0.91345 1.02808 1.23371 0.96036 1.01341 1.01056 0.91859 0.84015 0.86008 0.83929 0.75390 0.76718 0.89626 0.90358 0.93251 0.93518 0.77334 0.87588 0.88451 0.89507 0.89783 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.12 13.67 55.48 0.76 -22.36 16 2 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 3 Si 0.94 19.53 29.55 -169.99 -5.02 14.51 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.39 -10.22 9.49 30.88 0.29 -9.92 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 9 O -0.17 -4.30 9.32 0.00 0.00 -4.30 16 10 C 0.16 3.55 6.66 -38.94 -0.26 3.29 16 11 C -0.26 -5.58 9.14 -39.36 -0.36 -5.94 16 12 C 0.13 2.53 7.29 -39.43 -0.29 2.25 16 13 F -0.15 -2.89 17.26 2.25 0.04 -2.85 16 14 C -0.23 -4.18 10.02 -39.48 -0.40 -4.57 16 15 C -0.05 -0.93 8.69 -39.43 -0.34 -1.27 16 16 C 0.08 1.55 6.33 -83.44 -0.53 1.02 16 17 N -0.66 -11.62 5.20 -14.07 -0.07 -11.69 16 18 C 0.71 11.27 7.25 -86.92 -0.63 10.64 16 19 O -0.58 -10.51 10.78 5.29 0.06 -10.45 16 20 N -0.74 -9.06 3.07 -58.68 -0.18 -9.24 16 21 C 0.20 2.18 2.43 -67.93 -0.17 2.01 16 22 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 23 C -0.12 -1.11 5.10 -26.73 -0.14 -1.25 16 24 C 0.07 0.66 6.93 37.16 0.26 0.91 16 25 O -0.58 -5.28 13.66 -35.23 -0.48 -5.76 16 26 C -0.17 -2.02 5.71 -90.62 -0.52 -2.53 16 27 C -0.17 -2.32 9.74 -26.69 -0.26 -2.58 16 28 C -0.18 -2.54 9.82 -26.69 -0.26 -2.80 16 29 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.14 3.07 5.64 -52.48 -0.30 2.77 16 31 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 32 H 0.14 2.56 6.19 -52.48 -0.32 2.24 16 33 H 0.41 6.91 8.59 -40.82 -0.35 6.56 16 34 H 0.40 4.30 8.62 -40.82 -0.35 3.95 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.43 7.75 -51.93 -0.40 0.03 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.38 1.87 9.12 45.56 0.42 2.29 16 40 H 0.11 1.04 8.11 -51.93 -0.42 0.62 16 41 H 0.10 1.49 6.67 -51.93 -0.35 1.15 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.12 2.10 5.01 -51.93 -0.26 1.84 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -29.96 369.50 -7.70 -37.66 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -4.68 Total: 18.65 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -3.69 Total: -9.72 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.51 Total: -43.29 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.42 Total: -20.52 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.96 -7.70 -37.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761662537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.011 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds