Wall clock time and date at job start Tue Mar 31 2020 20:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86790 * 120.00294 * 2 1 4 4 H 1.48497 * 109.47502 * 270.00414 * 3 2 1 5 5 H 1.48506 * 109.46979 * 30.00356 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99878 * 3 2 1 7 7 C 1.38639 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99377 * 179.97438 * 7 2 1 9 9 O 1.34807 * 120.00165 * 0.02562 * 7 2 1 10 10 C 1.35786 * 116.99654 * 174.95438 * 9 7 2 11 11 C 1.38731 * 120.08929 * 5.43069 * 10 9 7 12 12 C 1.38349 * 119.97603 * 180.02562 * 11 10 9 13 13 F 1.35097 * 119.92350 * 179.97438 * 12 11 10 14 14 C 1.38538 * 120.14922 * 0.02562 * 12 11 10 15 15 C 1.38201 * 120.17642 * 359.74701 * 14 12 11 16 16 C 1.38688 * 120.01947 * 0.50459 * 15 14 12 17 17 N 1.40138 * 120.07459 * 179.77407 * 16 15 14 18 18 C 1.34771 * 119.99913 * 34.59208 * 17 16 15 19 19 O 1.21589 * 120.00359 * 355.63085 * 18 17 16 20 20 N 1.34781 * 119.99916 * 175.35650 * 18 17 16 21 21 C 1.46501 * 120.00332 * 180.27831 * 20 18 17 22 22 H 1.08996 * 109.46560 * 325.00026 * 21 20 18 23 23 C 1.52997 * 109.47101 * 205.00053 * 21 20 18 24 24 C 1.52997 * 109.47418 * 64.99741 * 23 21 20 25 25 O 1.42897 * 109.47415 * 179.97438 * 24 23 21 26 26 C 1.53000 * 109.47149 * 84.99491 * 21 20 18 27 27 C 1.53003 * 117.49656 * 8.75295 * 26 21 20 28 28 C 1.52999 * 117.50054 * 300.09256 * 26 21 20 29 29 H 0.96998 * 119.99950 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.01465 * 0.02562 * 11 10 9 31 31 H 1.08000 * 119.91074 * 179.97438 * 14 12 11 32 32 H 1.08003 * 119.98539 * 180.27629 * 15 14 12 33 33 H 0.96998 * 119.99918 * 214.59760 * 17 16 15 34 34 H 0.97005 * 120.00008 * 0.27703 * 20 18 17 35 35 H 1.09005 * 109.46670 * 184.99801 * 23 21 20 36 36 H 1.08996 * 109.46967 * 304.99714 * 23 21 20 37 37 H 1.09001 * 109.47244 * 300.00203 * 24 23 21 38 38 H 1.09004 * 109.46821 * 59.99994 * 24 23 21 39 39 H 0.96700 * 114.00564 * 179.97438 * 25 24 23 40 40 H 1.08997 * 115.54487 * 154.41740 * 26 21 20 41 41 H 1.09000 * 117.49973 * 359.97438 * 27 26 21 42 42 H 1.09004 * 117.49449 * 145.02307 * 27 26 21 43 43 H 1.09000 * 117.49627 * 214.98017 * 28 26 21 44 44 H 1.08997 * 117.49694 * 359.97370 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4473 2.6526 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3348 -2.3681 -0.0016 10 6 2.0703 -3.5045 -0.1085 11 6 3.4561 -3.4397 -0.0969 12 6 4.2032 -4.5989 -0.2065 13 9 5.5526 -4.5346 -0.1957 14 6 3.5707 -5.8255 -0.3284 15 6 2.1906 -5.8977 -0.3359 16 6 1.4347 -4.7397 -0.2317 17 7 0.0351 -4.8112 -0.2439 18 6 -0.5909 -5.8621 0.3218 19 8 0.0585 -6.7862 0.7720 20 7 -1.9366 -5.8861 0.3934 21 6 -2.6169 -7.0257 1.0138 22 1 -2.0637 -7.9399 0.7988 23 6 -4.0342 -7.1424 0.4494 24 6 -3.9634 -7.4762 -1.0420 25 8 -5.2871 -7.5859 -1.5690 26 6 -2.6864 -6.8156 2.5277 27 6 -2.2606 -5.4504 3.0717 28 6 -1.3633 -6.6726 3.2825 29 1 -0.4850 0.8400 0.0004 30 1 3.9515 -2.4847 -0.0024 31 1 4.1578 -6.7279 -0.4141 32 1 1.7008 -6.8560 -0.4266 33 1 -0.4830 -4.1043 -0.6596 34 1 -2.4546 -5.1489 0.0341 35 1 -4.5700 -7.9336 0.9738 36 1 -4.5585 -6.1966 0.5855 37 1 -3.4275 -6.6851 -1.5665 38 1 -3.4391 -8.4221 -1.1781 39 1 -5.3188 -7.7961 -2.5123 40 1 -3.5032 -7.3276 3.0362 41 1 -1.9306 -4.7021 2.3512 42 1 -2.7971 -5.0646 3.9386 43 1 -1.3098 -7.0902 4.2879 44 1 -0.4433 -6.7285 2.7007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761662537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:13 Heat of formation + Delta-G solvation = -114.849458 kcal Electronic energy + Delta-G solvation = -29664.207332 eV Core-core repulsion = 25304.282906 eV Total energy + Delta-G solvation = -4359.924426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.81876 -41.91548 -40.69473 -39.00077 -37.91589 -37.58096 -35.52573 -35.17100 -34.30065 -32.47911 -31.03581 -29.68308 -27.41501 -27.05381 -24.23455 -23.42801 -23.33210 -22.56501 -22.09108 -21.00247 -20.13252 -19.72439 -19.21431 -18.47050 -18.05953 -17.42251 -17.00494 -16.85016 -16.77658 -16.56412 -15.97805 -15.81316 -15.64691 -15.61385 -15.26554 -15.16971 -15.04002 -14.81867 -14.19629 -13.96871 -13.74103 -13.44963 -13.32095 -13.02076 -12.83777 -12.72284 -12.59139 -12.39163 -12.31873 -12.15698 -11.99586 -11.64251 -11.34414 -11.16530 -10.94801 -10.88742 -10.82695 -10.80987 -10.04138 -9.53054 -8.72875 -8.50670 -6.16514 0.23428 0.48480 1.37051 1.43547 1.51611 1.59605 2.08259 2.14484 2.69957 2.86834 3.06363 3.12647 3.19413 3.27764 3.47318 3.89232 3.96361 4.02906 4.04511 4.14282 4.17812 4.21023 4.38125 4.41711 4.56624 4.59041 4.67615 4.71088 4.83441 4.94429 4.98842 5.02093 5.07817 5.17056 5.23917 5.24873 5.32275 5.36209 5.39864 5.56624 5.62695 5.91761 5.95271 6.10612 6.88495 6.94077 6.95927 7.50314 7.64469 8.69490 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009609 B = 0.003598 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.228352 B = 7781.171960 C = 9274.895620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.007 4.007 3 Si 1.009 2.991 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.098 0.902 9 O -0.201 6.201 10 C 0.130 3.870 11 C -0.266 4.266 12 C 0.120 3.880 13 F -0.146 7.146 14 C -0.204 4.204 15 C -0.049 4.049 16 C 0.082 3.918 17 N -0.668 5.668 18 C 0.706 3.294 19 O -0.599 6.599 20 N -0.726 5.726 21 C 0.200 3.800 22 H 0.088 0.912 23 C -0.114 4.114 24 C 0.075 3.925 25 O -0.592 6.592 26 C -0.151 4.151 27 C -0.182 4.182 28 C -0.198 4.198 29 H 0.274 0.726 30 H 0.134 0.866 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.411 0.589 34 H 0.407 0.593 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.397 0.603 40 H 0.134 0.866 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.179 -12.890 -1.229 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.207 4.207 3 Si 0.829 3.171 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.492 4.492 8 H 0.115 0.885 9 O -0.107 6.107 10 C 0.076 3.924 11 C -0.286 4.286 12 C 0.100 3.900 13 F -0.125 7.125 14 C -0.224 4.224 15 C -0.070 4.070 16 C -0.014 4.014 17 N -0.314 5.314 18 C 0.408 3.592 19 O -0.479 6.479 20 N -0.381 5.381 21 C 0.096 3.904 22 H 0.106 0.894 23 C -0.152 4.152 24 C -0.002 4.002 25 O -0.401 6.401 26 C -0.170 4.170 27 C -0.219 4.219 28 C -0.235 4.235 29 H 0.083 0.917 30 H 0.152 0.848 31 H 0.174 0.826 32 H 0.174 0.826 33 H 0.247 0.753 34 H 0.242 0.758 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.247 0.753 40 H 0.152 0.848 41 H 0.092 0.908 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.206 -13.403 -0.175 15.219 hybrid contribution 0.559 1.765 -0.758 2.000 sum -6.647 -11.638 -0.932 13.435 Atomic orbital electron populations 1.70114 1.07455 1.28887 1.47588 1.26329 0.96809 1.01983 0.95567 0.84706 0.77869 0.75269 0.79234 1.18819 1.19570 1.18335 1.21723 0.92465 0.81227 1.53763 0.88514 1.83912 1.34598 1.11771 1.80371 1.19189 0.90103 0.87522 0.95567 1.20916 0.93419 0.99022 1.15283 1.17470 0.76198 0.94293 1.02021 1.91424 1.29584 1.97360 1.94086 1.20883 0.94656 0.96360 1.10461 1.20876 0.92345 0.97299 0.96469 1.16877 0.82612 0.91135 1.10768 1.42237 1.04511 1.24865 1.59805 1.15927 0.82801 0.82293 0.78206 1.90794 1.65378 1.37580 1.54164 1.45189 1.03639 1.25161 1.64128 1.20306 0.92295 0.88375 0.89451 0.89376 1.21669 0.94430 1.04314 0.94791 1.22154 0.83638 1.00131 0.94309 1.86394 1.28234 1.94493 1.30930 1.22855 0.98933 1.00293 0.94905 1.22882 1.04501 0.91424 1.03097 1.23280 0.95885 1.02494 1.01814 0.91677 0.84835 0.82557 0.82639 0.75283 0.75753 0.88227 0.90380 0.93584 0.92928 0.75320 0.84800 0.90827 0.88273 0.88534 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.35 13.67 21.61 0.30 -50.05 16 2 C -0.01 -0.37 5.49 84.83 0.47 0.09 16 3 Si 1.01 40.62 29.55 68.60 2.03 42.65 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.42 -22.49 9.49 67.92 0.64 -21.85 16 8 H 0.10 4.95 5.20 -2.91 -0.02 4.93 16 9 O -0.20 -10.80 9.32 -22.91 -0.21 -11.01 16 10 C 0.13 6.04 6.66 22.68 0.15 6.20 16 11 C -0.27 -11.64 9.14 22.41 0.20 -11.43 16 12 C 0.12 4.62 7.29 22.37 0.16 4.79 16 13 F -0.15 -5.32 17.26 44.97 0.78 -4.55 16 14 C -0.20 -6.98 10.02 22.33 0.22 -6.75 16 15 C -0.05 -1.78 8.69 22.37 0.19 -1.58 16 16 C 0.08 3.31 6.33 38.22 0.24 3.55 16 17 N -0.67 -23.77 5.20 -316.71 -1.65 -25.42 16 18 C 0.71 22.50 7.25 179.05 1.30 23.80 16 19 O -0.60 -21.43 10.78 -4.00 -0.04 -21.48 16 20 N -0.73 -17.32 3.07 -457.82 -1.41 -18.73 16 21 C 0.20 4.04 2.43 44.99 0.11 4.15 16 22 H 0.09 1.97 7.58 -2.39 -0.02 1.95 16 23 C -0.11 -1.79 5.10 30.59 0.16 -1.63 16 24 C 0.08 1.17 6.93 71.98 0.50 1.67 16 25 O -0.59 -9.58 13.66 -148.98 -2.03 -11.62 16 26 C -0.15 -3.20 5.71 -10.79 -0.06 -3.26 16 27 C -0.18 -4.77 9.74 30.62 0.30 -4.47 16 28 C -0.20 -5.42 9.82 30.62 0.30 -5.11 16 29 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 30 H 0.13 5.98 5.64 -2.91 -0.02 5.96 16 31 H 0.16 4.31 8.06 -2.91 -0.02 4.28 16 32 H 0.16 5.30 6.19 -2.91 -0.02 5.28 16 33 H 0.41 14.40 8.59 -92.71 -0.80 13.60 16 34 H 0.41 8.62 8.62 -92.70 -0.80 7.82 16 35 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 0.74 7.75 -2.39 -0.02 0.72 16 38 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.40 3.13 9.12 -74.06 -0.68 2.45 16 40 H 0.13 2.16 8.11 -2.39 -0.02 2.14 16 41 H 0.07 2.29 6.67 -2.39 -0.02 2.28 16 42 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 43 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.09 3.17 5.01 -2.39 -0.01 3.16 16 Total: -1.00 -66.17 369.50 1.47 -64.70 By element: Atomic # 1 Polarization: 48.52 SS G_CDS: -1.17 Total: 47.34 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 4.89 Total: -11.85 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -2.76 Total: -94.19 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -2.29 Total: -44.11 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.78 Total: -4.55 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -66.17 1.47 -64.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761662537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.149 kcal (2) G-P(sol) polarization free energy of solvation -66.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds