Wall clock time and date at job start Tue Mar 31 2020 20:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86805 * 119.99786 * 2 1 4 4 H 1.48496 * 109.47202 * 269.99962 * 3 2 1 5 5 H 1.48495 * 109.47227 * 30.00006 * 3 2 1 6 6 H 1.48501 * 109.46947 * 149.99924 * 3 2 1 7 7 C 1.38634 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99979 * 180.02562 * 7 2 1 9 9 O 1.34805 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.35778 * 117.00109 * 174.97942 * 9 7 2 11 11 C 1.38739 * 120.08854 * 5.19811 * 10 9 7 12 12 C 1.38338 * 119.98011 * 180.02562 * 11 10 9 13 13 F 1.35102 * 119.92392 * 179.97438 * 12 11 10 14 14 C 1.38544 * 120.14963 * 0.02562 * 12 11 10 15 15 C 1.38202 * 120.17718 * 359.68066 * 14 12 11 16 16 C 1.38694 * 120.01383 * 0.59597 * 15 14 12 17 17 N 1.40138 * 120.07314 * 179.70165 * 16 15 14 18 18 C 1.34784 * 119.99863 * 335.23008 * 17 16 15 19 19 O 1.21593 * 119.99814 * 354.33340 * 18 17 16 20 20 N 1.34777 * 119.99818 * 174.32826 * 18 17 16 21 21 C 1.46505 * 119.99612 * 179.72317 * 20 18 17 22 22 H 1.08997 * 109.46668 * 35.28310 * 21 20 18 23 23 C 1.53001 * 109.46700 * 155.27894 * 21 20 18 24 24 C 1.53002 * 109.47283 * 295.00127 * 23 21 20 25 25 O 1.42897 * 109.47230 * 180.02562 * 24 23 21 26 26 C 1.52990 * 109.47225 * 275.27995 * 21 20 18 27 27 C 1.52995 * 117.50253 * 128.74960 * 26 21 20 28 28 C 1.53000 * 117.50193 * 60.08656 * 26 21 20 29 29 H 0.97004 * 120.00571 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.00996 * 359.97438 * 11 10 9 31 31 H 1.08000 * 119.91426 * 179.97438 * 14 12 11 32 32 H 1.07992 * 119.99598 * 180.32197 * 15 14 12 33 33 H 0.97001 * 120.00250 * 155.22893 * 17 16 15 34 34 H 0.97000 * 119.99778 * 0.02562 * 20 18 17 35 35 H 1.09002 * 109.47144 * 54.99869 * 23 21 20 36 36 H 1.09003 * 109.46989 * 175.00202 * 23 21 20 37 37 H 1.09003 * 109.46922 * 300.00487 * 24 23 21 38 38 H 1.09003 * 109.47047 * 60.00111 * 24 23 21 39 39 H 0.96707 * 113.99843 * 180.02562 * 25 24 23 40 40 H 1.09006 * 115.54852 * 274.41639 * 26 21 20 41 41 H 1.09005 * 117.49790 * 359.97438 * 27 26 21 42 42 H 1.09000 * 117.50199 * 145.01442 * 27 26 21 43 43 H 1.09001 * 117.49981 * 214.97729 * 28 26 21 44 44 H 1.08996 * 117.49940 * 0.02562 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4403 0.7001 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0001 9 8 1.3349 -2.3680 -0.0016 10 6 2.0705 -3.5044 -0.1079 11 6 3.4563 -3.4391 -0.1007 12 6 4.2035 -4.5982 -0.2098 13 9 5.5529 -4.5333 -0.2032 14 6 3.5711 -5.8253 -0.3268 15 6 2.1910 -5.8983 -0.3285 16 6 1.4349 -4.7402 -0.2254 17 7 0.0354 -4.8121 -0.2334 18 6 -0.5823 -5.8573 -0.8188 19 8 0.0681 -6.6839 -1.4290 20 7 -1.9208 -5.9862 -0.7279 21 6 -2.5928 -7.1190 -1.3694 22 1 -1.9551 -8.0009 -1.3096 23 6 -3.9168 -7.3975 -0.6550 24 6 -3.6369 -7.8521 0.7789 25 8 -4.8734 -8.1128 1.4459 26 6 -2.8657 -6.7853 -2.8373 27 6 -2.4114 -7.7997 -3.8887 28 6 -1.6603 -6.4757 -3.7274 29 1 -0.4851 0.8400 -0.0004 30 1 3.9516 -2.4835 -0.0109 31 1 4.1582 -6.7278 -0.4121 32 1 1.7012 -6.8569 -0.4147 33 1 -0.4887 -4.1098 0.1825 34 1 -2.4395 -5.3266 -0.2414 35 1 -4.5183 -6.4886 -0.6371 36 1 -4.4580 -8.1811 -1.1854 37 1 -3.0353 -8.7609 0.7610 38 1 -3.0957 -7.0685 1.3093 39 1 -4.7720 -8.4056 2.3620 40 1 -3.7884 -6.2383 -3.0314 41 1 -1.9177 -8.7047 -3.5345 42 1 -3.0350 -7.9199 -4.7746 43 1 -1.7901 -5.7254 -4.5073 44 1 -0.6729 -6.5102 -3.2672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761662540.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:17 Heat of formation + Delta-G solvation = -118.181858 kcal Electronic energy + Delta-G solvation = -29417.634017 eV Core-core repulsion = 25057.565087 eV Total energy + Delta-G solvation = -4360.068930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.79984 -41.87408 -40.62865 -39.01071 -37.91019 -37.60302 -35.58419 -35.38259 -34.29600 -32.39501 -31.02150 -29.69969 -27.41187 -26.96329 -24.26525 -23.40309 -23.15921 -22.60407 -22.03851 -21.37088 -20.13591 -19.75840 -19.19241 -18.41315 -18.11406 -17.18802 -17.00525 -16.93362 -16.55258 -16.52102 -16.06145 -15.94950 -15.67697 -15.57546 -15.27983 -15.21945 -15.12938 -14.70602 -14.34575 -13.97787 -13.76955 -13.43508 -13.16225 -13.08888 -12.87321 -12.64740 -12.55437 -12.34363 -12.27653 -12.13504 -12.02984 -11.64308 -11.40265 -11.17579 -11.07875 -10.93408 -10.86738 -10.80555 -10.02124 -9.52290 -8.64842 -8.50623 -6.15725 0.24774 0.48412 1.37057 1.43749 1.51765 1.57641 2.05483 2.14274 2.72953 2.85027 3.03647 3.14764 3.21494 3.31149 3.48615 3.88822 3.95424 3.96939 4.06534 4.17103 4.18176 4.19244 4.35791 4.38041 4.49520 4.62191 4.68444 4.72111 4.83645 4.94759 4.99245 5.01070 5.07946 5.14930 5.24379 5.27123 5.32115 5.35064 5.41691 5.57157 5.60050 5.92845 5.96648 6.11131 6.87590 6.94573 6.95972 7.49109 7.64625 8.70075 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.003369 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.123709 B = 8307.964122 C = 9620.269365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.008 4.008 3 Si 1.009 2.991 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.414 4.414 8 H 0.098 0.902 9 O -0.205 6.205 10 C 0.125 3.875 11 C -0.262 4.262 12 C 0.114 3.886 13 F -0.146 7.146 14 C -0.199 4.199 15 C -0.063 4.063 16 C 0.089 3.911 17 N -0.667 5.667 18 C 0.707 3.293 19 O -0.598 6.598 20 N -0.724 5.724 21 C 0.202 3.798 22 H 0.083 0.917 23 C -0.114 4.114 24 C 0.075 3.925 25 O -0.592 6.592 26 C -0.167 4.167 27 C -0.152 4.152 28 C -0.206 4.206 29 H 0.274 0.726 30 H 0.134 0.866 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.413 0.587 34 H 0.407 0.593 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.397 0.603 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.012 -14.126 0.070 15.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.208 4.208 3 Si 0.829 3.171 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.490 4.490 8 H 0.115 0.885 9 O -0.110 6.110 10 C 0.072 3.928 11 C -0.283 4.283 12 C 0.094 3.906 13 F -0.125 7.125 14 C -0.219 4.219 15 C -0.084 4.084 16 C -0.007 4.007 17 N -0.313 5.313 18 C 0.408 3.592 19 O -0.479 6.479 20 N -0.379 5.379 21 C 0.098 3.902 22 H 0.102 0.898 23 C -0.152 4.152 24 C -0.003 4.003 25 O -0.400 6.400 26 C -0.186 4.186 27 C -0.190 4.190 28 C -0.243 4.243 29 H 0.083 0.917 30 H 0.152 0.848 31 H 0.174 0.826 32 H 0.179 0.821 33 H 0.249 0.751 34 H 0.243 0.757 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.247 0.753 40 H 0.133 0.867 41 H 0.114 0.886 42 H 0.127 0.873 43 H 0.099 0.901 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.132 -14.527 -0.997 16.214 hybrid contribution 0.582 1.752 0.831 2.025 sum -6.550 -12.775 -0.165 14.357 Atomic orbital electron populations 1.70109 1.07477 1.28885 1.47749 1.26333 0.96813 1.02007 0.95621 0.84703 0.77994 0.75286 0.79071 1.19267 1.19383 1.18068 1.21711 0.92461 0.81160 1.53691 0.88475 1.83873 1.34628 1.11767 1.80741 1.19043 0.90107 0.87070 0.96605 1.20900 0.93351 0.99011 1.15006 1.17462 0.76201 0.94330 1.02581 1.91421 1.29591 1.97360 1.94152 1.20892 0.94655 0.96369 1.09993 1.21006 0.92388 0.97437 0.97540 1.16936 0.82625 0.90901 1.10204 1.42317 1.04583 1.25134 1.59220 1.15902 0.82828 0.81546 0.78908 1.90759 1.65031 1.44694 1.47425 1.45196 1.04304 1.30096 1.58313 1.20339 0.92910 0.87828 0.89155 0.89847 1.21676 0.95498 1.03613 0.94424 1.22153 0.85627 0.99441 0.93038 1.86394 1.31404 1.90544 1.31676 1.22749 0.99043 1.04988 0.91866 1.22973 1.02754 0.92983 1.00280 1.23178 0.97989 1.00175 1.02927 0.91688 0.84804 0.82619 0.82110 0.75120 0.75745 0.90169 0.88400 0.93043 0.93504 0.75298 0.86697 0.88561 0.87279 0.90051 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.69 13.67 21.61 0.30 -50.40 16 2 C -0.01 -0.43 5.49 84.83 0.47 0.03 16 3 Si 1.01 40.78 29.55 68.60 2.03 42.81 16 4 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.41 -22.47 9.49 67.91 0.64 -21.82 16 8 H 0.10 4.97 5.20 -2.91 -0.02 4.96 16 9 O -0.20 -10.98 9.17 -22.79 -0.21 -11.19 16 10 C 0.13 5.84 6.66 22.68 0.15 5.99 16 11 C -0.26 -11.50 9.14 22.41 0.20 -11.29 16 12 C 0.11 4.42 7.29 22.37 0.16 4.58 16 13 F -0.15 -5.37 17.26 44.97 0.78 -4.60 16 14 C -0.20 -6.87 10.02 22.33 0.22 -6.65 16 15 C -0.06 -2.29 8.71 22.37 0.19 -2.09 16 16 C 0.09 3.64 6.45 38.22 0.25 3.88 16 17 N -0.67 -23.92 5.30 -316.68 -1.68 -25.60 16 18 C 0.71 22.45 7.69 179.05 1.38 23.83 16 19 O -0.60 -21.21 10.52 -4.01 -0.04 -21.26 16 20 N -0.72 -17.06 4.52 -457.81 -2.07 -19.13 16 21 C 0.20 4.04 2.27 44.99 0.10 4.14 16 22 H 0.08 1.86 7.34 -2.39 -0.02 1.84 16 23 C -0.11 -1.78 5.11 30.60 0.16 -1.63 16 24 C 0.08 1.17 6.93 71.98 0.50 1.67 16 25 O -0.59 -9.55 13.66 -148.98 -2.03 -11.59 16 26 C -0.17 -3.48 5.36 -10.80 -0.06 -3.54 16 27 C -0.15 -3.03 10.18 30.62 0.31 -2.72 16 28 C -0.21 -5.49 9.73 30.62 0.30 -5.19 16 29 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.13 5.99 5.63 -2.91 -0.02 5.98 16 31 H 0.16 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.16 5.55 5.78 -2.91 -0.02 5.54 16 33 H 0.41 14.75 8.36 -92.71 -0.78 13.97 16 34 H 0.41 8.28 8.62 -92.71 -0.80 7.48 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 38 H 0.05 0.75 7.75 -2.39 -0.02 0.73 16 39 H 0.40 3.12 9.12 -74.05 -0.68 2.45 16 40 H 0.12 2.13 8.11 -2.38 -0.02 2.11 16 41 H 0.10 1.88 8.05 -2.38 -0.02 1.86 16 42 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.09 3.17 5.00 -2.39 -0.01 3.16 16 Total: -1.00 -66.27 371.56 0.89 -65.38 By element: Atomic # 1 Polarization: 47.53 SS G_CDS: -1.16 Total: 46.38 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 4.98 Total: -10.80 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -3.45 Total: -95.13 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -2.29 Total: -44.03 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.78 Total: -4.60 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -66.27 0.89 -65.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761662540.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.802 kcal (2) G-P(sol) polarization free energy of solvation -66.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds