Wall clock time and date at job start Tue Mar 31 2020 20:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86805 * 119.99629 * 2 1 4 4 H 1.48502 * 109.46612 * 239.99540 * 3 2 1 5 5 H 1.48496 * 109.47054 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46921 * 120.00059 * 3 2 1 7 7 C 1.38635 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99588 * 179.97438 * 7 2 1 9 9 O 1.34798 * 120.00282 * 0.02562 * 7 2 1 10 10 C 1.35779 * 117.00167 * 174.47393 * 9 7 2 11 11 C 1.38738 * 120.08566 * 354.13067 * 10 9 7 12 12 C 1.38346 * 119.97554 * 180.31900 * 11 10 9 13 13 F 1.35100 * 119.92277 * 179.97438 * 12 11 10 14 14 C 1.38549 * 120.15396 * 359.92684 * 12 11 10 15 15 C 1.38200 * 120.17167 * 0.04633 * 14 12 11 16 16 C 1.38693 * 120.02177 * 359.97438 * 15 14 12 17 17 N 1.40135 * 120.07546 * 179.97438 * 16 15 14 18 18 C 1.34784 * 119.99664 * 34.00107 * 17 16 15 19 19 O 1.21589 * 120.00167 * 5.65310 * 18 17 16 20 20 N 1.34773 * 119.99775 * 185.65910 * 18 17 16 21 21 C 1.46501 * 119.99775 * 179.97438 * 20 18 17 22 22 C 1.53004 * 109.47091 * 180.02562 * 21 20 18 23 23 O 1.42904 * 109.47103 * 64.99968 * 22 21 20 24 24 C 1.42899 * 113.99670 * 180.02562 * 23 22 21 25 25 C 1.53785 * 113.61227 * 249.13538 * 24 23 22 26 26 C 1.53954 * 87.02038 * 220.05196 * 25 24 23 27 27 C 1.53780 * 113.61165 * 151.53317 * 24 23 22 28 28 H 0.96996 * 120.00047 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.00968 * 0.24377 * 11 10 9 30 30 H 1.07993 * 119.91286 * 180.02562 * 14 12 11 31 31 H 1.07994 * 119.98714 * 179.97438 * 15 14 12 32 32 H 0.96998 * 120.00268 * 213.99292 * 17 16 15 33 33 H 0.96999 * 120.00614 * 359.97438 * 20 18 17 34 34 H 1.09000 * 109.47023 * 299.99802 * 21 20 18 35 35 H 1.08997 * 109.47430 * 60.00207 * 21 20 18 36 36 H 1.09000 * 109.47034 * 185.00265 * 22 21 20 37 37 H 1.08998 * 109.46954 * 304.99794 * 22 21 20 38 38 H 1.08992 * 112.85337 * 20.33112 * 24 23 22 39 39 H 1.08995 * 113.61366 * 334.57040 * 25 24 23 40 40 H 1.08996 * 113.61379 * 105.47374 * 25 24 23 41 41 H 1.08996 * 113.53563 * 270.81334 * 26 25 24 42 42 H 1.08999 * 113.66677 * 139.93575 * 26 25 24 43 43 H 1.08999 * 113.61341 * 254.52312 * 27 24 23 44 44 H 1.09003 * 113.61684 * 25.34334 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6965 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3349 -2.3680 0.0005 10 6 2.0696 -3.5040 -0.1154 11 6 3.4351 -3.4283 -0.3490 12 6 4.1804 -4.5872 -0.4733 13 9 5.5099 -4.5123 -0.7013 14 6 3.5666 -5.8245 -0.3637 15 6 2.2069 -5.9071 -0.1305 16 6 1.4528 -4.7499 -0.0051 17 7 0.0739 -4.8324 0.2308 18 6 -0.4226 -5.8362 0.9809 19 8 0.3323 -6.6101 1.5374 20 7 -1.7557 -5.9821 1.1140 21 6 -2.2954 -7.0735 1.9288 22 6 -3.8242 -7.0138 1.9133 23 8 -4.2971 -7.2620 0.5879 24 6 -5.7202 -7.2282 0.4628 25 6 -6.3466 -8.6039 0.1795 26 6 -7.2943 -7.8821 -0.7957 27 6 -6.2059 -6.8044 -0.9334 28 1 -0.4850 0.8400 -0.0004 29 1 3.9158 -2.4651 -0.4349 30 1 4.1521 -6.7267 -0.4610 31 1 1.7315 -6.8731 -0.0459 32 1 -0.5232 -4.1671 -0.1455 33 1 -2.3580 -5.3646 0.6704 34 1 -1.9653 -8.0289 1.5210 35 1 -1.9379 -6.9729 2.9536 36 1 -4.2242 -7.7695 2.5893 37 1 -4.1525 -6.0262 2.2373 38 1 -6.2039 -6.6874 1.2761 39 1 -5.6660 -9.3012 -0.3088 40 1 -6.8534 -9.0386 1.0410 41 1 -8.2093 -7.5210 -0.3264 42 1 -7.4796 -8.4357 -1.7162 43 1 -6.5994 -5.7886 -0.9691 44 1 -5.4862 -7.0076 -1.7265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761664879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:20 Heat of formation + Delta-G solvation = -97.427543 kcal Electronic energy + Delta-G solvation = -28454.563351 eV Core-core repulsion = 24095.394396 eV Total energy + Delta-G solvation = -4359.168955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.20790 -40.19455 -39.54076 -38.72368 -36.80615 -36.24549 -34.26700 -33.96420 -32.38325 -29.83793 -29.27408 -27.76534 -25.95994 -25.47317 -24.95084 -23.16403 -22.19844 -21.53876 -20.44757 -19.96292 -18.31327 -18.22348 -17.68158 -17.47493 -16.76608 -15.97235 -15.70856 -15.46675 -15.20194 -15.04248 -14.93359 -14.77947 -14.37517 -14.28016 -13.86921 -13.61239 -13.46909 -13.21218 -12.96880 -12.76873 -12.74040 -12.38841 -12.26323 -12.08802 -11.77423 -11.61426 -11.34021 -11.22619 -11.01578 -10.93883 -10.71409 -10.69703 -10.54619 -9.88655 -9.76638 -9.69061 -9.43973 -8.94046 -8.90729 -7.83651 -7.03744 -6.58085 -4.15370 1.89459 2.16497 2.96537 3.09030 3.09483 3.11855 3.38439 3.53986 3.87018 4.26031 4.29782 4.39856 4.49578 4.52621 4.57118 4.80357 4.90665 4.97269 4.97991 4.99432 5.15635 5.15821 5.36138 5.47422 5.53807 5.56743 5.61922 5.64219 5.75250 5.78741 5.84205 5.98595 6.07031 6.26014 6.55863 6.62911 6.73715 6.95353 6.96361 6.99417 7.11301 7.19774 7.36069 7.70246 7.86337 8.32963 8.87512 8.92427 9.50289 10.59104 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010106 B = 0.002711 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.065252 B =10325.023785 C =12431.945130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.169 6.169 10 C 0.156 3.844 11 C -0.257 4.257 12 C 0.126 3.874 13 F -0.152 7.152 14 C -0.226 4.226 15 C -0.051 4.051 16 C 0.083 3.917 17 N -0.665 5.665 18 C 0.704 3.296 19 O -0.587 6.587 20 N -0.741 5.741 21 C 0.144 3.856 22 C 0.048 3.952 23 O -0.370 6.370 24 C 0.061 3.939 25 C -0.158 4.158 26 C -0.143 4.143 27 C -0.138 4.138 28 H 0.272 0.728 29 H 0.143 0.857 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.411 0.589 33 H 0.400 0.600 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.461 -12.112 0.625 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.111 0.889 9 O -0.072 6.072 10 C 0.100 3.900 11 C -0.278 4.278 12 C 0.106 3.894 13 F -0.131 7.131 14 C -0.246 4.246 15 C -0.071 4.071 16 C -0.011 4.011 17 N -0.313 5.313 18 C 0.405 3.595 19 O -0.466 6.466 20 N -0.398 5.398 21 C 0.020 3.980 22 C -0.029 4.029 23 O -0.289 6.289 24 C 0.003 3.997 25 C -0.195 4.195 26 C -0.180 4.180 27 C -0.175 4.175 28 H 0.082 0.918 29 H 0.160 0.840 30 H 0.140 0.860 31 H 0.154 0.846 32 H 0.247 0.753 33 H 0.235 0.765 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.110 -12.644 1.014 17.537 hybrid contribution -0.021 1.579 -0.142 1.585 sum -12.131 -11.066 0.872 16.443 Atomic orbital electron populations 1.70001 1.05919 1.28012 1.45566 1.25268 0.95898 0.98806 0.96217 0.85761 0.78751 0.79505 0.79390 1.19363 1.20227 1.19389 1.21287 0.91937 0.80481 1.52998 0.88940 1.83934 1.33804 1.11259 1.78182 1.18812 0.89517 0.86991 0.94666 1.20844 0.94114 0.98342 1.14496 1.17437 0.76668 0.94255 1.00994 1.91407 1.32036 1.97358 1.92275 1.20448 0.95190 0.95622 1.13380 1.20490 0.92628 0.97088 0.96929 1.16612 0.82614 0.90981 1.10941 1.42211 1.06585 1.29285 1.53175 1.15858 0.82244 0.81927 0.79475 1.90894 1.57348 1.46468 1.51856 1.44942 1.05235 1.34094 1.55544 1.21167 0.90254 0.90725 0.95888 1.22853 0.94287 1.00569 0.85198 1.88029 1.20694 1.91909 1.28226 1.23759 0.81165 0.96775 0.98032 1.23518 0.98667 0.97574 0.99785 1.22686 0.96995 0.98185 1.00161 1.23201 0.97856 0.99302 0.97147 0.91848 0.83993 0.85965 0.84605 0.75306 0.76543 0.90808 0.90140 0.91636 0.92377 0.89593 0.89194 0.91452 0.90082 0.90773 0.90912 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.57 13.67 55.48 0.76 -22.82 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 19.83 29.55 -169.99 -5.02 14.81 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.39 -10.42 9.44 30.88 0.29 -10.12 16 8 H 0.09 2.32 5.30 -52.49 -0.28 2.04 16 9 O -0.17 -4.46 9.30 0.05 0.00 -4.46 16 10 C 0.16 3.67 6.66 -38.94 -0.26 3.41 16 11 C -0.26 -5.71 9.11 -39.36 -0.36 -6.07 16 12 C 0.13 2.58 7.29 -39.43 -0.29 2.29 16 13 F -0.15 -2.96 17.26 2.25 0.04 -2.92 16 14 C -0.23 -4.31 10.02 -39.48 -0.40 -4.70 16 15 C -0.05 -1.00 8.65 -39.43 -0.34 -1.34 16 16 C 0.08 1.78 6.29 -83.44 -0.52 1.26 16 17 N -0.67 -12.69 5.21 -14.07 -0.07 -12.76 16 18 C 0.70 12.70 8.29 -86.91 -0.72 11.98 16 19 O -0.59 -12.21 14.10 5.29 0.07 -12.13 16 20 N -0.74 -10.21 5.51 -65.22 -0.36 -10.57 16 21 C 0.14 1.64 6.06 -4.04 -0.02 1.61 16 22 C 0.05 0.42 5.92 37.16 0.22 0.64 16 23 O -0.37 -3.77 10.30 -35.23 -0.36 -4.13 16 24 C 0.06 0.49 4.30 -25.92 -0.11 0.38 16 25 C -0.16 -1.13 7.93 -25.83 -0.20 -1.33 16 26 C -0.14 -0.91 8.09 -25.83 -0.21 -1.12 16 27 C -0.14 -1.07 7.91 -25.92 -0.21 -1.27 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.14 3.14 5.71 -52.49 -0.30 2.84 16 30 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 31 H 0.14 2.61 6.47 -52.49 -0.34 2.27 16 32 H 0.41 7.47 8.57 -40.82 -0.35 7.12 16 33 H 0.40 4.88 8.49 -40.82 -0.35 4.53 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.58 7.88 -51.93 -0.41 0.17 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -31.01 377.87 -8.29 -39.30 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -5.81 Total: 13.36 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -3.23 Total: -3.38 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.33 Total: -46.15 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.29 Total: -20.72 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.01 -8.29 -39.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761664879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.129 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds