Wall clock time and date at job start Tue Mar 31 2020 20:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86805 * 119.99629 * 2 1 4 4 H 1.48502 * 109.46612 * 239.99540 * 3 2 1 5 5 H 1.48496 * 109.47054 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46921 * 120.00059 * 3 2 1 7 7 C 1.38635 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99588 * 179.97438 * 7 2 1 9 9 O 1.34798 * 120.00282 * 0.02562 * 7 2 1 10 10 C 1.35779 * 117.00167 * 174.47393 * 9 7 2 11 11 C 1.38738 * 120.08566 * 354.13067 * 10 9 7 12 12 C 1.38346 * 119.97554 * 180.31900 * 11 10 9 13 13 F 1.35100 * 119.92277 * 179.97438 * 12 11 10 14 14 C 1.38549 * 120.15396 * 359.92684 * 12 11 10 15 15 C 1.38200 * 120.17167 * 0.04633 * 14 12 11 16 16 C 1.38693 * 120.02177 * 359.97438 * 15 14 12 17 17 N 1.40135 * 120.07546 * 179.97438 * 16 15 14 18 18 C 1.34784 * 119.99664 * 34.00107 * 17 16 15 19 19 O 1.21589 * 120.00167 * 5.65310 * 18 17 16 20 20 N 1.34773 * 119.99775 * 185.65910 * 18 17 16 21 21 C 1.46501 * 119.99775 * 179.97438 * 20 18 17 22 22 C 1.53004 * 109.47091 * 180.02562 * 21 20 18 23 23 O 1.42904 * 109.47103 * 64.99968 * 22 21 20 24 24 C 1.42899 * 113.99670 * 180.02562 * 23 22 21 25 25 C 1.53785 * 113.61227 * 249.13538 * 24 23 22 26 26 C 1.53954 * 87.02038 * 220.05196 * 25 24 23 27 27 C 1.53780 * 113.61165 * 151.53317 * 24 23 22 28 28 H 0.96996 * 120.00047 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.00968 * 0.24377 * 11 10 9 30 30 H 1.07993 * 119.91286 * 180.02562 * 14 12 11 31 31 H 1.07994 * 119.98714 * 179.97438 * 15 14 12 32 32 H 0.96998 * 120.00268 * 213.99292 * 17 16 15 33 33 H 0.96999 * 120.00614 * 359.97438 * 20 18 17 34 34 H 1.09000 * 109.47023 * 299.99802 * 21 20 18 35 35 H 1.08997 * 109.47430 * 60.00207 * 21 20 18 36 36 H 1.09000 * 109.47034 * 185.00265 * 22 21 20 37 37 H 1.08998 * 109.46954 * 304.99794 * 22 21 20 38 38 H 1.08992 * 112.85337 * 20.33112 * 24 23 22 39 39 H 1.08995 * 113.61366 * 334.57040 * 25 24 23 40 40 H 1.08996 * 113.61379 * 105.47374 * 25 24 23 41 41 H 1.08996 * 113.53563 * 270.81334 * 26 25 24 42 42 H 1.08999 * 113.66677 * 139.93575 * 26 25 24 43 43 H 1.08999 * 113.61341 * 254.52312 * 27 24 23 44 44 H 1.09003 * 113.61684 * 25.34334 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6965 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3349 -2.3680 0.0005 10 6 2.0696 -3.5040 -0.1154 11 6 3.4351 -3.4283 -0.3490 12 6 4.1804 -4.5872 -0.4733 13 9 5.5099 -4.5123 -0.7013 14 6 3.5666 -5.8245 -0.3637 15 6 2.2069 -5.9071 -0.1305 16 6 1.4528 -4.7499 -0.0051 17 7 0.0739 -4.8324 0.2308 18 6 -0.4226 -5.8362 0.9809 19 8 0.3323 -6.6101 1.5374 20 7 -1.7557 -5.9821 1.1140 21 6 -2.2954 -7.0735 1.9288 22 6 -3.8242 -7.0138 1.9133 23 8 -4.2971 -7.2620 0.5879 24 6 -5.7202 -7.2282 0.4628 25 6 -6.3466 -8.6039 0.1795 26 6 -7.2943 -7.8821 -0.7957 27 6 -6.2059 -6.8044 -0.9334 28 1 -0.4850 0.8400 -0.0004 29 1 3.9158 -2.4651 -0.4349 30 1 4.1521 -6.7267 -0.4610 31 1 1.7315 -6.8731 -0.0459 32 1 -0.5232 -4.1671 -0.1455 33 1 -2.3580 -5.3646 0.6704 34 1 -1.9653 -8.0289 1.5210 35 1 -1.9379 -6.9729 2.9536 36 1 -4.2242 -7.7695 2.5893 37 1 -4.1525 -6.0262 2.2373 38 1 -6.2039 -6.6874 1.2761 39 1 -5.6660 -9.3012 -0.3088 40 1 -6.8534 -9.0386 1.0410 41 1 -8.2093 -7.5210 -0.3264 42 1 -7.4796 -8.4357 -1.7162 43 1 -6.5994 -5.7886 -0.9691 44 1 -5.4862 -7.0076 -1.7265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761664879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:19 Heat of formation + Delta-G solvation = -117.296569 kcal Electronic energy + Delta-G solvation = -28455.424937 eV Core-core repulsion = 24095.394396 eV Total energy + Delta-G solvation = -4360.030541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.81484 -41.71684 -40.47425 -40.08553 -38.18786 -37.36922 -35.54092 -35.38558 -34.30220 -31.20821 -30.76865 -29.20724 -27.37357 -26.53574 -25.56376 -24.42615 -23.65125 -22.99161 -21.90223 -20.55254 -20.13759 -19.72381 -19.24274 -18.38921 -18.11109 -17.21715 -16.99896 -16.82036 -16.57393 -16.29770 -16.28020 -15.96133 -15.83132 -15.54376 -15.35443 -15.23675 -15.00223 -14.74373 -14.10514 -13.92699 -13.72021 -13.48823 -13.40067 -13.34566 -13.02828 -13.02106 -12.58913 -12.39832 -12.33705 -12.16469 -11.89683 -11.68007 -11.60886 -11.36803 -11.26683 -11.06147 -10.81214 -10.35099 -10.13541 -9.54413 -8.71692 -8.50422 -6.16074 0.21759 0.47293 1.37254 1.45813 1.50947 1.63835 2.04677 2.14906 2.68470 2.72244 3.06519 3.16621 3.22579 3.46542 3.69135 3.72534 3.89283 3.95014 3.98348 4.08321 4.17624 4.23615 4.36744 4.41668 4.52126 4.59663 4.70926 4.84029 4.87434 4.87776 4.93867 5.02040 5.05808 5.06179 5.23033 5.25996 5.29208 5.33962 5.41869 5.45799 5.58838 5.91254 5.94572 6.08590 6.34661 6.93997 6.94847 7.47018 7.64301 8.70088 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010106 B = 0.002711 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.065252 B =10325.023785 C =12431.945130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.009 4.009 3 Si 1.011 2.989 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.416 4.416 8 H 0.098 0.902 9 O -0.202 6.202 10 C 0.129 3.871 11 C -0.262 4.262 12 C 0.121 3.879 13 F -0.144 7.144 14 C -0.201 4.201 15 C -0.052 4.052 16 C 0.083 3.917 17 N -0.668 5.668 18 C 0.702 3.298 19 O -0.615 6.615 20 N -0.726 5.726 21 C 0.140 3.860 22 C 0.055 3.945 23 O -0.393 6.393 24 C 0.054 3.946 25 C -0.157 4.157 26 C -0.135 4.135 27 C -0.145 4.145 28 H 0.275 0.725 29 H 0.137 0.863 30 H 0.158 0.842 31 H 0.147 0.853 32 H 0.413 0.587 33 H 0.409 0.591 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.671 -13.042 1.007 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.208 4.208 3 Si 0.830 3.170 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.115 0.885 9 O -0.108 6.108 10 C 0.076 3.924 11 C -0.283 4.283 12 C 0.101 3.899 13 F -0.123 7.123 14 C -0.221 4.221 15 C -0.072 4.072 16 C -0.013 4.013 17 N -0.315 5.315 18 C 0.403 3.597 19 O -0.496 6.496 20 N -0.382 5.382 21 C 0.017 3.983 22 C -0.022 4.022 23 O -0.313 6.313 24 C -0.003 4.003 25 C -0.194 4.194 26 C -0.172 4.172 27 C -0.183 4.183 28 H 0.084 0.916 29 H 0.154 0.846 30 H 0.176 0.824 31 H 0.164 0.836 32 H 0.249 0.751 33 H 0.245 0.755 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.346 -13.619 1.392 18.434 hybrid contribution 0.072 1.608 -0.273 1.632 sum -12.274 -12.011 1.119 17.210 Atomic orbital electron populations 1.70112 1.07510 1.29012 1.47512 1.26373 0.96844 1.02078 0.95523 0.84751 0.77576 0.74872 0.79756 1.18397 1.19400 1.18678 1.21694 0.92495 0.81198 1.53828 0.88456 1.83907 1.34601 1.11813 1.80429 1.19156 0.90192 0.87131 0.95966 1.20926 0.93968 0.99025 1.14373 1.17424 0.76980 0.94125 1.01352 1.91427 1.31336 1.97330 1.92200 1.20843 0.94965 0.96355 1.09922 1.20685 0.93011 0.96902 0.96635 1.16882 0.83799 0.90757 1.09854 1.42249 1.05958 1.29760 1.53540 1.16000 0.83386 0.81268 0.79088 1.90860 1.58409 1.47341 1.52975 1.44960 1.03769 1.34497 1.54986 1.21367 0.92247 0.89318 0.95391 1.22843 0.92096 1.02016 0.85241 1.87997 1.22099 1.92153 1.29023 1.23978 0.80225 0.97598 0.98526 1.23486 0.98592 0.96996 1.00358 1.22693 0.96996 0.97322 1.00231 1.23233 0.98231 1.00057 0.96770 0.91620 0.84572 0.82389 0.83561 0.75102 0.75541 0.91622 0.89830 0.89178 0.91345 0.87956 0.90412 0.90144 0.88607 0.90529 0.90556 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.02 13.67 21.61 0.30 -50.73 16 2 C -0.01 -0.45 5.49 84.83 0.47 0.01 16 3 Si 1.01 40.95 29.55 68.60 2.03 42.98 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 7 C -0.42 -22.86 9.44 67.91 0.64 -22.22 16 8 H 0.10 5.02 5.30 -2.91 -0.02 5.01 16 9 O -0.20 -11.10 9.30 -22.74 -0.21 -11.31 16 10 C 0.13 6.20 6.66 22.68 0.15 6.35 16 11 C -0.26 -11.71 9.11 22.42 0.20 -11.51 16 12 C 0.12 4.77 7.29 22.37 0.16 4.93 16 13 F -0.14 -5.33 17.26 44.97 0.78 -4.55 16 14 C -0.20 -7.15 10.02 22.33 0.22 -6.93 16 15 C -0.05 -1.98 8.65 22.37 0.19 -1.78 16 16 C 0.08 3.54 6.29 38.22 0.24 3.78 16 17 N -0.67 -25.79 5.21 -316.69 -1.65 -27.44 16 18 C 0.70 25.19 8.29 179.05 1.48 26.68 16 19 O -0.62 -25.26 14.10 -4.00 -0.06 -25.32 16 20 N -0.73 -19.63 5.51 -478.53 -2.64 -22.27 16 21 C 0.14 3.04 6.06 86.38 0.52 3.56 16 22 C 0.05 0.85 5.92 71.98 0.43 1.27 16 23 O -0.39 -7.56 10.30 -148.98 -1.53 -9.09 16 24 C 0.05 0.79 4.30 31.12 0.13 0.93 16 25 C -0.16 -2.00 7.93 31.18 0.25 -1.75 16 26 C -0.14 -1.52 8.09 31.18 0.25 -1.26 16 27 C -0.15 -2.15 7.91 31.12 0.25 -1.90 16 28 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.14 6.15 5.71 -2.91 -0.02 6.13 16 30 H 0.16 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.15 5.37 6.47 -2.91 -0.02 5.35 16 32 H 0.41 15.49 8.57 -92.71 -0.79 14.70 16 33 H 0.41 9.78 8.49 -92.71 -0.79 9.00 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.10 1.14 7.88 -2.39 -0.02 1.12 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -67.79 377.87 2.09 -65.70 By element: Atomic # 1 Polarization: 42.38 SS G_CDS: -0.52 Total: 41.86 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 5.60 Total: 0.17 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -3.99 Total: -100.44 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -1.80 Total: -45.72 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.78 Total: -4.55 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -67.79 2.09 -65.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761664879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.592 kcal (2) G-P(sol) polarization free energy of solvation -67.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds