Wall clock time and date at job start Tue Mar 31 2020 21:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53005 * 110.45989 * 2 1 4 4 N 1.46497 * 109.46862 * 59.30170 * 3 2 1 5 5 C 1.34781 * 120.00104 * 180.02562 * 4 3 2 6 6 O 1.21592 * 119.99641 * 359.97438 * 5 4 3 7 7 N 1.34769 * 120.00048 * 179.97438 * 5 4 3 8 8 C 1.40140 * 119.99755 * 176.07776 * 7 5 4 9 9 C 1.38689 * 120.07498 * 25.52345 * 8 7 5 10 10 C 1.38200 * 120.01785 * 179.97438 * 9 8 7 11 11 C 1.38545 * 120.17955 * 0.04732 * 10 9 8 12 12 F 1.35091 * 119.92688 * 179.97438 * 11 10 9 13 13 C 1.38342 * 120.14798 * 359.97438 * 11 10 9 14 14 C 1.38743 * 119.97814 * 0.24944 * 13 11 10 15 15 O 1.35776 * 120.08943 * 179.74433 * 14 13 11 16 16 C 1.34809 * 116.99671 * 5.63035 * 15 14 13 17 17 H 1.07997 * 120.00536 * 5.37636 * 16 15 14 18 18 C 1.38643 * 120.00036 * 185.36921 * 16 15 14 19 19 N 1.31578 * 119.99430 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00028 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47437 * 90.00080 * 20 18 16 22 22 H 1.48501 * 109.46914 * 210.00131 * 20 18 16 23 23 H 1.48497 * 109.47269 * 329.99589 * 20 18 16 24 24 C 1.54514 * 110.51114 * 237.39724 * 2 1 3 25 25 C 1.54483 * 104.06073 * 241.21834 * 24 2 1 26 26 O 1.44421 * 104.80390 * 23.97521 * 25 24 2 27 27 C 1.44643 * 105.37401 * 319.56577 * 26 25 24 28 28 H 1.09004 * 109.47480 * 60.70013 * 1 2 3 29 29 H 1.09001 * 109.47079 * 180.70106 * 1 2 3 30 30 H 1.09002 * 109.47253 * 300.69760 * 1 2 3 31 31 H 1.08996 * 109.46648 * 299.30071 * 3 2 1 32 32 H 1.08996 * 109.47363 * 179.29996 * 3 2 1 33 33 H 0.97004 * 120.00120 * 359.97438 * 4 3 2 34 34 H 0.97000 * 120.00563 * 356.07474 * 7 5 4 35 35 H 1.07998 * 119.99347 * 359.97438 * 9 8 7 36 36 H 1.08005 * 119.90946 * 180.02562 * 10 9 8 37 37 H 1.07996 * 120.01215 * 179.97438 * 13 11 10 38 38 H 0.96998 * 119.99459 * 179.97438 * 19 18 16 39 39 H 1.09000 * 110.50867 * 359.85979 * 24 2 1 40 40 H 1.08998 * 110.51486 * 122.43487 * 24 2 1 41 41 H 1.08999 * 110.37302 * 142.81234 * 25 24 2 42 42 H 1.09008 * 110.36978 * 265.03549 * 25 24 2 43 43 H 1.08999 * 110.33863 * 281.59927 * 27 26 25 44 44 H 1.08998 * 110.51107 * 159.18382 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 7 1.5747 2.1375 1.1877 5 6 1.9197 3.4231 1.3992 6 8 2.6379 3.9985 0.6045 7 7 1.4685 4.0708 2.4915 8 6 1.8927 5.3803 2.7547 9 6 2.3126 6.1969 1.7154 10 6 2.7302 7.4883 1.9761 11 6 2.7318 7.9709 3.2748 12 9 3.1415 9.2338 3.5240 13 6 2.3148 7.1623 4.3170 14 6 1.8987 5.8633 4.0630 15 8 1.4939 5.0661 5.0848 16 6 1.4087 5.6318 6.3055 17 1 1.5727 6.6929 6.4217 18 6 1.1102 4.8513 7.4119 19 7 0.9107 3.5585 7.2704 20 14 0.9914 5.6352 9.1032 21 1 -0.4054 6.0760 9.3475 22 1 1.3858 4.6445 10.1367 23 1 1.8995 6.8082 9.1700 24 6 2.0713 -0.7798 -1.2191 25 6 2.8786 -1.9394 -0.5946 26 8 2.3118 -2.1166 0.7219 27 6 2.0712 -0.7797 1.2189 28 1 -0.3634 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3634 0.5246 0.8837 31 1 1.7205 1.9496 -0.8962 32 1 3.1544 1.4148 0.0126 33 1 1.0014 1.6785 1.8214 34 1 0.8501 3.6307 3.0956 35 1 2.3133 5.8237 0.7019 36 1 3.0564 8.1229 1.1654 37 1 2.3173 7.5406 5.3286 38 1 0.7022 3.0124 8.0444 39 1 1.2489 -1.1673 -1.8205 40 1 2.7179 -0.1433 -1.8232 41 1 2.7574 -2.8474 -1.1853 42 1 3.9329 -1.6722 -0.5228 43 1 3.0010 -0.3337 1.5720 44 1 1.3301 -0.7969 2.0179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761668030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:04 Heat of formation + Delta-G solvation = -117.919694 kcal Electronic energy + Delta-G solvation = -29180.642596 eV Core-core repulsion = 24820.585034 eV Total energy + Delta-G solvation = -4360.057561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.22387 -40.59265 -39.88690 -38.70770 -36.50923 -35.56060 -34.08804 -32.86585 -32.40504 -30.04848 -29.37500 -28.41081 -26.98201 -25.75462 -25.44556 -23.07860 -22.41890 -21.61891 -20.53254 -19.77021 -18.38788 -18.24679 -17.67453 -16.91541 -16.36233 -15.99894 -15.72873 -15.30730 -15.23192 -15.06113 -14.92188 -14.79731 -14.42591 -14.28768 -13.84159 -13.73038 -13.51507 -13.42184 -13.23507 -13.15330 -12.65015 -12.34462 -12.18366 -12.06419 -11.71310 -11.67120 -11.39698 -11.28629 -11.04322 -10.97993 -10.95596 -10.74844 -10.54861 -9.96762 -9.87087 -9.80871 -9.43201 -9.04896 -8.96164 -7.85343 -7.04737 -6.60918 -4.18486 1.87731 2.14169 2.82244 3.05925 3.07816 3.12126 3.41263 3.67567 3.84571 4.12681 4.33455 4.38533 4.46650 4.49239 4.74149 4.86342 4.87656 4.91881 4.97229 5.13251 5.29251 5.35718 5.40528 5.46856 5.50773 5.56933 5.61514 5.64575 5.71347 5.76709 5.79044 5.94871 6.04639 6.20238 6.42471 6.52036 6.66179 6.68327 6.92700 6.97998 7.07806 7.13336 7.28116 7.68982 7.83487 8.22171 8.78751 8.85693 9.46665 10.56316 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.003126 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.839515 B = 8955.876625 C =11251.841091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C 0.156 3.844 4 N -0.746 5.746 5 C 0.705 3.295 6 O -0.585 6.585 7 N -0.662 5.662 8 C 0.081 3.919 9 C -0.066 4.066 10 C -0.226 4.226 11 C 0.123 3.877 12 F -0.152 7.152 13 C -0.256 4.256 14 C 0.153 3.847 15 O -0.171 6.171 16 C -0.392 4.392 17 H 0.094 0.906 18 C 0.043 3.957 19 N -0.861 5.861 20 Si 0.942 3.058 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.266 1.266 24 C -0.143 4.143 25 C 0.044 3.956 26 O -0.374 6.374 27 C 0.051 3.949 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.398 0.602 34 H 0.413 0.587 35 H 0.157 0.843 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.271 0.729 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 -7.866 -13.415 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 C 0.031 3.969 4 N -0.403 5.403 5 C 0.405 3.595 6 O -0.464 6.464 7 N -0.307 5.307 8 C -0.015 4.015 9 C -0.086 4.086 10 C -0.246 4.246 11 C 0.103 3.897 12 F -0.131 7.131 13 C -0.277 4.277 14 C 0.097 3.903 15 O -0.074 6.074 16 C -0.468 4.468 17 H 0.111 0.889 18 C -0.162 4.162 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.181 4.181 25 C -0.033 4.033 26 O -0.293 6.293 27 C -0.026 4.026 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.232 0.768 34 H 0.248 0.752 35 H 0.175 0.825 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.179 -8.016 -13.848 16.002 hybrid contribution -0.413 0.461 1.539 1.659 sum -0.592 -7.555 -12.309 14.455 Atomic orbital electron populations 1.21857 0.92704 1.02406 1.02520 1.22227 0.97483 0.94906 0.96250 1.21200 0.98810 0.89222 0.87662 1.45094 1.56148 1.11448 1.27577 1.15849 0.80308 0.81149 0.82157 1.90799 1.42057 1.66392 1.47107 1.42207 1.48502 1.13885 1.26141 1.16728 1.09743 0.84586 0.90404 1.21078 0.96916 0.91203 0.99448 1.20539 1.11981 0.97468 0.94609 1.17484 0.99234 0.79010 0.93928 1.91403 1.88328 1.38124 1.95273 1.20827 1.12161 0.94957 0.99771 1.18734 0.93895 0.90059 0.87564 1.83920 1.72896 1.35350 1.15283 1.21331 1.50083 0.94278 0.81059 0.88882 1.25270 0.96247 0.95396 0.99271 1.70008 1.43435 1.04569 1.31481 0.85688 0.79057 0.78753 0.79888 1.19773 1.20183 1.19073 1.23001 1.00713 0.97163 0.97217 1.23411 0.96992 0.98673 0.84221 1.89161 1.83076 1.26096 1.30943 1.23652 1.00724 0.82398 0.95819 0.91977 0.91788 0.92082 0.91142 0.91316 0.76761 0.75151 0.82545 0.86014 0.83999 0.91869 0.90052 0.89905 0.89119 0.92148 0.91519 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.11 37.15 0.30 -0.76 16 2 C -0.11 -0.90 0.75 -152.94 -0.11 -1.01 16 3 C 0.16 1.61 4.31 -4.04 -0.02 1.59 16 4 N -0.75 -9.14 5.09 -65.23 -0.33 -9.47 16 5 C 0.70 11.72 8.45 -86.92 -0.73 10.99 16 6 O -0.58 -11.19 13.26 5.28 0.07 -11.12 16 7 N -0.66 -11.94 5.29 -14.07 -0.07 -12.02 16 8 C 0.08 1.66 6.48 -83.43 -0.54 1.12 16 9 C -0.07 -1.28 8.79 -39.43 -0.35 -1.63 16 10 C -0.23 -4.23 10.02 -39.48 -0.40 -4.63 16 11 C 0.12 2.49 7.29 -39.43 -0.29 2.20 16 12 F -0.15 -2.95 17.26 2.25 0.04 -2.91 16 13 C -0.26 -5.61 9.11 -39.36 -0.36 -5.96 16 14 C 0.15 3.51 6.66 -38.94 -0.26 3.25 16 15 O -0.17 -4.41 9.19 0.03 0.00 -4.41 16 16 C -0.39 -10.24 9.44 30.88 0.29 -9.95 16 17 H 0.09 2.30 5.29 -52.49 -0.28 2.02 16 18 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 19 N -0.86 -23.25 13.67 55.48 0.76 -22.49 16 20 Si 0.94 19.60 29.55 -169.99 -5.02 14.58 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 C -0.14 -1.00 6.38 -25.16 -0.16 -1.16 16 25 C 0.04 0.35 7.64 37.94 0.29 0.64 16 26 O -0.37 -4.08 11.65 -35.23 -0.41 -4.50 16 27 C 0.05 0.49 6.27 37.94 0.24 0.73 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.47 6.88 -51.93 -0.36 0.12 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 33 H 0.40 4.20 7.07 -40.82 -0.29 3.91 16 34 H 0.41 7.13 8.38 -40.82 -0.34 6.79 16 35 H 0.16 2.99 5.51 -52.49 -0.29 2.70 16 36 H 0.12 1.98 8.06 -52.48 -0.42 1.55 16 37 H 0.14 3.11 5.71 -52.49 -0.30 2.81 16 38 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 39 H 0.08 0.50 7.73 -51.93 -0.40 0.10 16 40 H 0.08 0.51 7.73 -51.93 -0.40 0.11 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 43 H 0.07 0.69 7.85 -51.93 -0.41 0.29 16 44 H 0.10 0.89 7.87 -51.93 -0.41 0.48 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -30.33 366.72 -7.20 -37.53 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -5.57 Total: 12.85 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -2.19 Total: -3.56 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.35 Total: -43.98 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.34 Total: -20.03 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.33 -7.20 -37.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761668030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.389 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds