Wall clock time and date at job start Tue Mar 31 2020 21:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53005 * 110.45989 * 2 1 4 4 N 1.46497 * 109.46862 * 59.30170 * 3 2 1 5 5 C 1.34781 * 120.00104 * 180.02562 * 4 3 2 6 6 O 1.21592 * 119.99641 * 359.97438 * 5 4 3 7 7 N 1.34769 * 120.00048 * 179.97438 * 5 4 3 8 8 C 1.40140 * 119.99755 * 176.07776 * 7 5 4 9 9 C 1.38689 * 120.07498 * 25.52345 * 8 7 5 10 10 C 1.38200 * 120.01785 * 179.97438 * 9 8 7 11 11 C 1.38545 * 120.17955 * 0.04732 * 10 9 8 12 12 F 1.35091 * 119.92688 * 179.97438 * 11 10 9 13 13 C 1.38342 * 120.14798 * 359.97438 * 11 10 9 14 14 C 1.38743 * 119.97814 * 0.24944 * 13 11 10 15 15 O 1.35776 * 120.08943 * 179.74433 * 14 13 11 16 16 C 1.34809 * 116.99671 * 5.63035 * 15 14 13 17 17 H 1.07997 * 120.00536 * 5.37636 * 16 15 14 18 18 C 1.38643 * 120.00036 * 185.36921 * 16 15 14 19 19 N 1.31578 * 119.99430 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00028 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47437 * 90.00080 * 20 18 16 22 22 H 1.48501 * 109.46914 * 210.00131 * 20 18 16 23 23 H 1.48497 * 109.47269 * 329.99589 * 20 18 16 24 24 C 1.54514 * 110.51114 * 237.39724 * 2 1 3 25 25 C 1.54483 * 104.06073 * 241.21834 * 24 2 1 26 26 O 1.44421 * 104.80390 * 23.97521 * 25 24 2 27 27 C 1.44643 * 105.37401 * 319.56577 * 26 25 24 28 28 H 1.09004 * 109.47480 * 60.70013 * 1 2 3 29 29 H 1.09001 * 109.47079 * 180.70106 * 1 2 3 30 30 H 1.09002 * 109.47253 * 300.69760 * 1 2 3 31 31 H 1.08996 * 109.46648 * 299.30071 * 3 2 1 32 32 H 1.08996 * 109.47363 * 179.29996 * 3 2 1 33 33 H 0.97004 * 120.00120 * 359.97438 * 4 3 2 34 34 H 0.97000 * 120.00563 * 356.07474 * 7 5 4 35 35 H 1.07998 * 119.99347 * 359.97438 * 9 8 7 36 36 H 1.08005 * 119.90946 * 180.02562 * 10 9 8 37 37 H 1.07996 * 120.01215 * 179.97438 * 13 11 10 38 38 H 0.96998 * 119.99459 * 179.97438 * 19 18 16 39 39 H 1.09000 * 110.50867 * 359.85979 * 24 2 1 40 40 H 1.08998 * 110.51486 * 122.43487 * 24 2 1 41 41 H 1.08999 * 110.37302 * 142.81234 * 25 24 2 42 42 H 1.09008 * 110.36978 * 265.03549 * 25 24 2 43 43 H 1.08999 * 110.33863 * 281.59927 * 27 26 25 44 44 H 1.08998 * 110.51107 * 159.18382 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 7 1.5747 2.1375 1.1877 5 6 1.9197 3.4231 1.3992 6 8 2.6379 3.9985 0.6045 7 7 1.4685 4.0708 2.4915 8 6 1.8927 5.3803 2.7547 9 6 2.3126 6.1969 1.7154 10 6 2.7302 7.4883 1.9761 11 6 2.7318 7.9709 3.2748 12 9 3.1415 9.2338 3.5240 13 6 2.3148 7.1623 4.3170 14 6 1.8987 5.8633 4.0630 15 8 1.4939 5.0661 5.0848 16 6 1.4087 5.6318 6.3055 17 1 1.5727 6.6929 6.4217 18 6 1.1102 4.8513 7.4119 19 7 0.9107 3.5585 7.2704 20 14 0.9914 5.6352 9.1032 21 1 -0.4054 6.0760 9.3475 22 1 1.3858 4.6445 10.1367 23 1 1.8995 6.8082 9.1700 24 6 2.0713 -0.7798 -1.2191 25 6 2.8786 -1.9394 -0.5946 26 8 2.3118 -2.1166 0.7219 27 6 2.0712 -0.7797 1.2189 28 1 -0.3634 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3634 0.5246 0.8837 31 1 1.7205 1.9496 -0.8962 32 1 3.1544 1.4148 0.0126 33 1 1.0014 1.6785 1.8214 34 1 0.8501 3.6307 3.0956 35 1 2.3133 5.8237 0.7019 36 1 3.0564 8.1229 1.1654 37 1 2.3173 7.5406 5.3286 38 1 0.7022 3.0124 8.0444 39 1 1.2489 -1.1673 -1.8205 40 1 2.7179 -0.1433 -1.8232 41 1 2.7574 -2.8474 -1.1853 42 1 3.9329 -1.6722 -0.5228 43 1 3.0010 -0.3337 1.5720 44 1 1.3301 -0.7969 2.0179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761668030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:03 Heat of formation + Delta-G solvation = -137.637267 kcal Electronic energy + Delta-G solvation = -29181.497614 eV Core-core repulsion = 24820.585034 eV Total energy + Delta-G solvation = -4360.912579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.80587 -41.86260 -40.93701 -40.20055 -38.11308 -36.61305 -35.57514 -34.29477 -33.83840 -31.07130 -30.70308 -29.88652 -27.79427 -27.37473 -26.62610 -24.19023 -23.67500 -23.11914 -21.87095 -20.59996 -20.13010 -19.69660 -19.14850 -18.36746 -17.24565 -17.09113 -16.94181 -16.86055 -16.56296 -16.49711 -16.10343 -15.99671 -15.89773 -15.52574 -15.31026 -15.19607 -14.96209 -14.69948 -14.30477 -14.00448 -13.95478 -13.74640 -13.43735 -13.31481 -13.07509 -12.81637 -12.56925 -12.35169 -12.33862 -12.15229 -11.94846 -11.75529 -11.67677 -11.64451 -11.35110 -10.94470 -10.81234 -10.70645 -10.17417 -9.52392 -8.67608 -8.50481 -6.15847 0.24233 0.48351 1.37768 1.44284 1.52476 1.57244 2.03185 2.14663 2.71700 2.97460 3.04931 3.11124 3.21629 3.47702 3.51275 3.66430 3.75617 3.97680 4.07222 4.18211 4.20753 4.30660 4.39164 4.53851 4.60243 4.67929 4.70244 4.77855 4.83417 4.88437 4.97966 4.98879 5.01798 5.08742 5.13648 5.24509 5.29989 5.32030 5.33320 5.49540 5.56415 5.82010 5.90279 5.95136 6.10103 6.90884 6.94648 7.43155 7.63889 8.70040 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.003126 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.839515 B = 8955.876625 C =11251.841091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 C 0.156 3.844 4 N -0.729 5.729 5 C 0.704 3.296 6 O -0.608 6.608 7 N -0.665 5.665 8 C 0.084 3.916 9 C -0.067 4.067 10 C -0.201 4.201 11 C 0.116 3.884 12 F -0.146 7.146 13 C -0.262 4.262 14 C 0.127 3.873 15 O -0.203 6.203 16 C -0.414 4.414 17 H 0.098 0.902 18 C -0.008 4.008 19 N -0.905 5.905 20 Si 1.010 2.990 21 H -0.263 1.263 22 H -0.272 1.272 23 H -0.259 1.259 24 C -0.137 4.137 25 C 0.037 3.963 26 O -0.397 6.397 27 C 0.047 3.953 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.407 0.593 34 H 0.414 0.586 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.135 0.865 38 H 0.274 0.726 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.680 -7.509 -14.904 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 C 0.032 3.968 4 N -0.385 5.385 5 C 0.404 3.596 6 O -0.489 6.489 7 N -0.310 5.310 8 C -0.012 4.012 9 C -0.088 4.088 10 C -0.221 4.221 11 C 0.096 3.904 12 F -0.125 7.125 13 C -0.283 4.283 14 C 0.073 3.927 15 O -0.109 6.109 16 C -0.490 4.490 17 H 0.115 0.885 18 C -0.207 4.207 19 N -0.541 5.541 20 Si 0.830 3.170 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.183 1.183 24 C -0.175 4.175 25 C -0.039 4.039 26 O -0.316 6.316 27 C -0.029 4.029 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.243 0.757 34 H 0.250 0.750 35 H 0.184 0.816 36 H 0.174 0.826 37 H 0.153 0.847 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.184 -7.677 -15.384 17.194 hybrid contribution -0.337 0.374 1.751 1.822 sum -0.521 -7.302 -13.633 15.474 Atomic orbital electron populations 1.21853 0.91962 1.02720 1.02794 1.22138 0.97914 0.93355 0.96429 1.21347 0.98470 0.90174 0.86768 1.45055 1.55295 1.09944 1.28206 1.15954 0.80063 0.82152 0.81390 1.90765 1.43116 1.67277 1.47718 1.42240 1.48711 1.13369 1.26716 1.16970 1.08584 0.85779 0.89909 1.21273 0.96719 0.91333 0.99453 1.20928 1.09063 0.97271 0.94833 1.17482 0.99689 0.79200 0.94040 1.91419 1.88228 1.37545 1.95287 1.20903 1.12166 0.95045 1.00163 1.19069 0.95093 0.90579 0.87940 1.83896 1.75045 1.36258 1.15665 1.21710 1.50755 0.94824 0.81739 0.88480 1.26340 0.95651 0.95897 1.02862 1.70115 1.45381 1.05993 1.32647 0.84695 0.79435 0.77996 0.74879 1.18811 1.19625 1.18327 1.23008 1.01198 0.96689 0.96616 1.23617 0.97150 0.99904 0.83265 1.89139 1.83413 1.26582 1.32477 1.23665 1.00292 0.82445 0.96528 0.91134 0.91455 0.92401 0.90609 0.92024 0.75651 0.74973 0.81588 0.82595 0.84739 0.91668 0.88670 0.88829 0.87498 0.91968 0.92668 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.11 71.98 0.58 -1.27 16 2 C -0.10 -1.48 0.75 -51.16 -0.04 -1.52 16 3 C 0.16 3.01 4.31 86.38 0.37 3.38 16 4 N -0.73 -17.30 5.09 -478.54 -2.43 -19.74 16 5 C 0.70 22.97 8.45 179.06 1.51 24.48 16 6 O -0.61 -22.56 13.26 -4.00 -0.05 -22.62 16 7 N -0.66 -24.08 5.29 -316.70 -1.67 -25.75 16 8 C 0.08 3.44 6.48 38.22 0.25 3.69 16 9 C -0.07 -2.50 8.79 22.37 0.20 -2.31 16 10 C -0.20 -7.03 10.02 22.33 0.22 -6.81 16 11 C 0.12 4.51 7.29 22.37 0.16 4.67 16 12 F -0.15 -5.37 17.26 44.97 0.78 -4.60 16 13 C -0.26 -11.53 9.11 22.42 0.20 -11.32 16 14 C 0.13 5.92 6.66 22.69 0.15 6.07 16 15 O -0.20 -10.87 9.19 -22.82 -0.21 -11.08 16 16 C -0.41 -22.33 9.44 67.92 0.64 -21.69 16 17 H 0.10 4.94 5.29 -2.91 -0.02 4.92 16 18 C -0.01 -0.41 5.49 84.83 0.47 0.06 16 19 N -0.90 -50.35 13.67 21.61 0.30 -50.05 16 20 Si 1.01 40.54 29.55 68.60 2.03 42.57 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 22 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 23 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 24 C -0.14 -1.62 6.38 31.61 0.20 -1.42 16 25 C 0.04 0.53 7.64 72.49 0.55 1.08 16 26 O -0.40 -8.36 11.65 -148.98 -1.74 -10.10 16 27 C 0.05 0.90 6.27 72.49 0.45 1.36 16 28 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.82 6.88 -2.39 -0.02 0.81 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.32 8.12 -2.39 -0.02 1.30 16 33 H 0.41 8.37 7.07 -92.71 -0.66 7.72 16 34 H 0.41 14.68 8.38 -92.71 -0.78 13.90 16 35 H 0.17 5.99 5.51 -2.91 -0.02 5.97 16 36 H 0.16 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.13 6.03 5.71 -2.91 -0.02 6.01 16 38 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 39 H 0.09 0.90 7.73 -2.39 -0.02 0.88 16 40 H 0.09 0.93 7.73 -2.39 -0.02 0.91 16 41 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.06 1.15 7.85 -2.39 -0.02 1.13 16 44 H 0.10 1.76 7.87 -2.39 -0.02 1.74 16 Total: -1.00 -65.84 366.72 2.56 -63.27 By element: Atomic # 1 Polarization: 40.01 SS G_CDS: -0.36 Total: 39.64 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 5.93 Total: -1.55 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -3.81 Total: -95.54 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -2.00 Total: -43.79 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.78 Total: -4.60 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -65.84 2.56 -63.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761668030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.365 kcal (2) G-P(sol) polarization free energy of solvation -65.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds