Wall clock time and date at job start Tue Mar 31 2020 20:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86808 * 120.00243 * 2 1 4 4 H 1.48498 * 109.46737 * 240.00017 * 3 2 1 5 5 H 1.48501 * 109.46728 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47428 * 119.99857 * 3 2 1 7 7 C 1.38640 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00073 * 179.97438 * 7 2 1 9 9 O 1.34802 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.35784 * 117.00127 * 185.04164 * 9 7 2 11 11 C 1.38736 * 120.08076 * 354.56371 * 10 9 7 12 12 C 1.38349 * 119.97369 * 179.97438 * 11 10 9 13 13 F 1.35106 * 119.92469 * 179.97438 * 12 11 10 14 14 C 1.38544 * 120.15305 * 359.97438 * 12 11 10 15 15 C 1.38202 * 120.17162 * 0.02562 * 14 12 11 16 16 C 1.38695 * 120.02155 * 359.74298 * 15 14 12 17 17 N 1.40135 * 120.07282 * 180.25889 * 16 15 14 18 18 C 1.34766 * 120.00337 * 34.59008 * 17 16 15 19 19 O 1.21593 * 120.00391 * 355.63336 * 18 17 16 20 20 N 1.34775 * 120.00076 * 175.62738 * 18 17 16 21 21 C 1.46503 * 120.00299 * 179.97438 * 20 18 17 22 22 C 1.53002 * 109.47371 * 180.02562 * 21 20 18 23 23 H 1.08990 * 109.52131 * 54.87698 * 22 21 20 24 24 C 1.53176 * 109.52133 * 175.00547 * 22 21 20 25 25 C 1.53181 * 109.03506 * 176.88661 * 24 22 21 26 26 C 1.53095 * 109.16118 * 303.01667 * 25 24 22 27 27 O 1.42898 * 109.41274 * 57.61038 * 26 25 24 28 28 C 1.42901 * 114.10090 * 298.83706 * 27 26 25 29 29 H 0.97002 * 119.99897 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.01919 * 359.95342 * 11 10 9 31 31 H 1.07997 * 119.91675 * 179.97438 * 14 12 11 32 32 H 1.07998 * 119.98317 * 179.97438 * 15 14 12 33 33 H 0.97005 * 119.99208 * 214.59281 * 17 16 15 34 34 H 0.97004 * 119.99912 * 0.02562 * 20 18 17 35 35 H 1.08999 * 109.47028 * 300.00617 * 21 20 18 36 36 H 1.09007 * 109.46497 * 60.00465 * 21 20 18 37 37 H 1.09003 * 109.54430 * 296.75162 * 24 22 21 38 38 H 1.08996 * 109.54679 * 57.02130 * 24 22 21 39 39 H 1.08999 * 109.52234 * 62.92333 * 25 24 22 40 40 H 1.09003 * 109.52235 * 183.04977 * 25 24 22 41 41 H 1.09001 * 109.47823 * 177.59417 * 26 25 24 42 42 H 1.08992 * 109.48038 * 297.61689 * 26 25 24 43 43 H 1.09001 * 109.47932 * 301.18085 * 28 27 26 44 44 H 1.09002 * 109.48419 * 181.14264 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1035 1.6963 -1.2125 5 1 1.2848 2.7465 -0.0006 6 1 3.1036 1.6965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3349 -2.3680 0.0005 10 6 2.0703 -3.5045 0.1074 11 6 3.4561 -3.4396 0.0968 12 6 4.2031 -4.5989 0.2063 13 9 5.5526 -4.5346 0.1953 14 6 3.5707 -5.8256 0.3273 15 6 2.1905 -5.8974 0.3386 16 6 1.4346 -4.7393 0.2340 17 7 0.0351 -4.8103 0.2508 18 6 -0.5836 -5.7370 1.0088 19 8 0.0716 -6.5621 1.6158 20 7 -1.9286 -5.7493 1.0941 21 6 -2.6012 -6.7571 1.9177 22 6 -4.1153 -6.5505 1.8412 23 1 -4.4317 -6.5581 0.7982 24 6 -4.8245 -7.6767 2.5995 25 6 -6.3341 -7.4172 2.5822 26 6 -6.6143 -6.0407 3.1909 27 8 -5.9006 -5.0430 2.4578 28 6 -4.4812 -5.2074 2.4784 29 1 -0.4850 0.8401 -0.0004 30 1 3.9516 -2.4846 0.0027 31 1 4.1576 -6.7282 0.4121 32 1 1.7007 -6.8552 0.4326 33 1 -0.4882 -4.1923 -0.2833 34 1 -2.4513 -5.0913 0.6097 35 1 -2.3515 -7.7523 1.5500 36 1 -2.2726 -6.6589 2.9524 37 1 -4.6130 -8.6309 2.1168 38 1 -4.4706 -7.7016 3.6301 39 1 -6.6961 -7.4416 1.5544 40 1 -6.8423 -8.1848 3.1658 41 1 -7.6831 -5.8325 3.1422 42 1 -6.2888 -6.0300 4.2310 43 1 -4.1277 -5.1859 3.5093 44 1 -4.0134 -4.3990 1.9165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761669618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:02 Heat of formation + Delta-G solvation = -127.936014 kcal Electronic energy + Delta-G solvation = -28903.972595 eV Core-core repulsion = 24543.480694 eV Total energy + Delta-G solvation = -4360.491902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.23274 -40.35354 -39.64884 -38.69891 -36.50706 -35.49779 -34.02850 -33.51089 -32.39794 -31.43558 -29.39211 -28.31180 -26.11446 -25.47166 -25.32574 -22.86037 -22.13698 -21.52195 -20.72743 -20.21917 -18.34684 -18.23623 -17.67421 -16.79660 -16.56600 -16.25585 -15.61109 -15.26185 -15.21128 -15.15288 -14.97595 -14.74592 -14.65673 -14.29042 -13.99309 -13.65439 -13.59624 -13.44543 -13.17252 -13.02142 -12.92302 -12.36052 -12.18383 -12.08535 -11.67372 -11.53333 -11.38507 -11.31154 -11.04994 -10.93985 -10.73398 -10.58561 -10.55258 -9.88350 -9.77838 -9.72726 -9.43702 -8.99562 -8.94690 -7.86386 -7.08249 -6.59404 -4.17133 1.86846 2.14036 2.87986 3.07822 3.09141 3.11323 3.46591 3.61906 3.85612 4.35445 4.36896 4.39992 4.46136 4.60742 4.61039 4.85312 4.86527 4.98494 5.02396 5.14248 5.14506 5.31961 5.39178 5.41624 5.47928 5.59127 5.61994 5.71608 5.73047 5.76148 5.82239 6.00569 6.05060 6.22017 6.50014 6.62173 6.70351 6.92479 6.94237 6.94997 7.08609 7.15219 7.30611 7.67853 7.84627 8.25802 8.84153 8.87412 9.47752 10.57623 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010148 B = 0.003018 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.385993 B = 9274.382730 C =11854.815388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.044 3.956 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.169 6.169 10 C 0.157 3.843 11 C -0.259 4.259 12 C 0.128 3.872 13 F -0.152 7.152 14 C -0.228 4.228 15 C -0.051 4.051 16 C 0.079 3.921 17 N -0.664 5.664 18 C 0.705 3.295 19 O -0.586 6.586 20 N -0.748 5.748 21 C 0.148 3.852 22 C -0.135 4.135 23 H 0.087 0.913 24 C -0.115 4.115 25 C -0.155 4.155 26 C 0.057 3.943 27 O -0.380 6.380 28 C 0.063 3.937 29 H 0.272 0.728 30 H 0.143 0.857 31 H 0.122 0.878 32 H 0.143 0.857 33 H 0.411 0.589 34 H 0.398 0.602 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.580 -11.798 3.001 16.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.161 4.161 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.072 6.072 10 C 0.101 3.899 11 C -0.280 4.280 12 C 0.108 3.892 13 F -0.131 7.131 14 C -0.249 4.249 15 C -0.071 4.071 16 C -0.016 4.016 17 N -0.311 5.311 18 C 0.406 3.594 19 O -0.464 6.464 20 N -0.404 5.404 21 C 0.024 3.976 22 C -0.154 4.154 23 H 0.106 0.894 24 C -0.153 4.153 25 C -0.193 4.193 26 C -0.020 4.020 27 O -0.299 6.299 28 C -0.014 4.014 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.160 0.840 33 H 0.246 0.754 34 H 0.233 0.767 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.528 -12.163 3.462 16.454 hybrid contribution 0.421 1.282 -0.300 1.382 sum -10.107 -10.880 3.162 15.183 Atomic orbital electron populations 1.69997 1.05910 1.28068 1.45403 1.25268 0.95900 0.98801 0.96170 0.85760 0.78758 0.79503 0.79381 1.19375 1.20192 1.19382 1.21292 0.91945 0.80426 1.53213 0.88903 1.83914 1.33874 1.11223 1.78153 1.18782 0.89463 0.86982 0.94662 1.20837 0.93411 0.98427 1.15292 1.17461 0.75921 0.94369 1.01448 1.91410 1.30167 1.97381 1.94112 1.20484 0.94628 0.95855 1.13908 1.20675 0.92142 0.97285 0.97045 1.16629 0.81274 0.91072 1.12661 1.42175 1.05241 1.36310 1.47367 1.15852 0.81713 0.82106 0.79779 1.90874 1.64238 1.40996 1.50330 1.45088 1.05076 1.36520 1.53764 1.21114 0.89428 0.91652 0.95438 1.22066 0.94738 0.96788 1.01831 0.89443 1.21555 0.94727 0.98108 1.00866 1.22185 0.96550 0.98009 1.02523 1.22594 0.97060 0.87621 0.94687 1.87973 1.18144 1.49955 1.73797 1.22697 0.81304 0.96771 1.00597 0.91802 0.83988 0.85979 0.83984 0.75352 0.76741 0.91264 0.91430 0.90947 0.91310 0.90946 0.90745 0.88977 0.93173 0.92706 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.39 13.67 55.48 0.76 -22.64 16 2 C 0.04 1.13 5.49 -17.51 -0.10 1.03 16 3 Si 0.94 19.72 29.55 -169.99 -5.02 14.70 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.36 9.49 30.88 0.29 -10.06 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -4.39 9.31 0.02 0.00 -4.39 16 10 C 0.16 3.63 6.66 -38.94 -0.26 3.37 16 11 C -0.26 -5.67 9.14 -39.36 -0.36 -6.03 16 12 C 0.13 2.57 7.29 -39.43 -0.29 2.28 16 13 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 14 C -0.23 -4.28 10.02 -39.48 -0.40 -4.68 16 15 C -0.05 -0.99 8.69 -39.43 -0.34 -1.33 16 16 C 0.08 1.63 6.33 -83.44 -0.53 1.11 16 17 N -0.66 -12.18 5.20 -14.08 -0.07 -12.26 16 18 C 0.70 12.14 8.41 -86.93 -0.73 11.41 16 19 O -0.59 -11.69 13.76 5.28 0.07 -11.62 16 20 N -0.75 -9.59 5.31 -65.22 -0.35 -9.93 16 21 C 0.15 1.59 5.07 -4.04 -0.02 1.57 16 22 C -0.14 -1.16 2.42 -90.48 -0.22 -1.38 16 23 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 24 C -0.11 -0.82 5.31 -26.55 -0.14 -0.96 16 25 C -0.15 -1.03 6.14 -26.59 -0.16 -1.20 16 26 C 0.06 0.45 6.84 37.21 0.25 0.70 16 27 O -0.38 -4.14 10.76 -35.23 -0.38 -4.52 16 28 C 0.06 0.63 5.97 37.21 0.22 0.85 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.54 16 30 H 0.14 3.10 5.64 -52.49 -0.30 2.80 16 31 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.14 2.68 6.19 -52.49 -0.32 2.36 16 33 H 0.41 7.11 8.58 -40.82 -0.35 6.76 16 34 H 0.40 4.37 7.71 -40.82 -0.31 4.06 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.10 1.01 7.27 -51.93 -0.38 0.64 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -30.71 367.82 -7.91 -38.62 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -5.72 Total: 12.68 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.77 Total: -3.30 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.34 Total: -44.82 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.31 Total: -20.53 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.71 -7.91 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761669618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.316 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds