Wall clock time and date at job start Tue Mar 31 2020 20:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86808 * 120.00243 * 2 1 4 4 H 1.48498 * 109.46737 * 240.00017 * 3 2 1 5 5 H 1.48501 * 109.46728 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47428 * 119.99857 * 3 2 1 7 7 C 1.38640 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00073 * 179.97438 * 7 2 1 9 9 O 1.34802 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.35784 * 117.00127 * 185.04164 * 9 7 2 11 11 C 1.38736 * 120.08076 * 354.56371 * 10 9 7 12 12 C 1.38349 * 119.97369 * 179.97438 * 11 10 9 13 13 F 1.35106 * 119.92469 * 179.97438 * 12 11 10 14 14 C 1.38544 * 120.15305 * 359.97438 * 12 11 10 15 15 C 1.38202 * 120.17162 * 0.02562 * 14 12 11 16 16 C 1.38695 * 120.02155 * 359.74298 * 15 14 12 17 17 N 1.40135 * 120.07282 * 180.25889 * 16 15 14 18 18 C 1.34766 * 120.00337 * 34.59008 * 17 16 15 19 19 O 1.21593 * 120.00391 * 355.63336 * 18 17 16 20 20 N 1.34775 * 120.00076 * 175.62738 * 18 17 16 21 21 C 1.46503 * 120.00299 * 179.97438 * 20 18 17 22 22 C 1.53002 * 109.47371 * 180.02562 * 21 20 18 23 23 H 1.08990 * 109.52131 * 54.87698 * 22 21 20 24 24 C 1.53176 * 109.52133 * 175.00547 * 22 21 20 25 25 C 1.53181 * 109.03506 * 176.88661 * 24 22 21 26 26 C 1.53095 * 109.16118 * 303.01667 * 25 24 22 27 27 O 1.42898 * 109.41274 * 57.61038 * 26 25 24 28 28 C 1.42901 * 114.10090 * 298.83706 * 27 26 25 29 29 H 0.97002 * 119.99897 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.01919 * 359.95342 * 11 10 9 31 31 H 1.07997 * 119.91675 * 179.97438 * 14 12 11 32 32 H 1.07998 * 119.98317 * 179.97438 * 15 14 12 33 33 H 0.97005 * 119.99208 * 214.59281 * 17 16 15 34 34 H 0.97004 * 119.99912 * 0.02562 * 20 18 17 35 35 H 1.08999 * 109.47028 * 300.00617 * 21 20 18 36 36 H 1.09007 * 109.46497 * 60.00465 * 21 20 18 37 37 H 1.09003 * 109.54430 * 296.75162 * 24 22 21 38 38 H 1.08996 * 109.54679 * 57.02130 * 24 22 21 39 39 H 1.08999 * 109.52234 * 62.92333 * 25 24 22 40 40 H 1.09003 * 109.52235 * 183.04977 * 25 24 22 41 41 H 1.09001 * 109.47823 * 177.59417 * 26 25 24 42 42 H 1.08992 * 109.48038 * 297.61689 * 26 25 24 43 43 H 1.09001 * 109.47932 * 301.18085 * 28 27 26 44 44 H 1.09002 * 109.48419 * 181.14264 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1035 1.6963 -1.2125 5 1 1.2848 2.7465 -0.0006 6 1 3.1036 1.6965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3349 -2.3680 0.0005 10 6 2.0703 -3.5045 0.1074 11 6 3.4561 -3.4396 0.0968 12 6 4.2031 -4.5989 0.2063 13 9 5.5526 -4.5346 0.1953 14 6 3.5707 -5.8256 0.3273 15 6 2.1905 -5.8974 0.3386 16 6 1.4346 -4.7393 0.2340 17 7 0.0351 -4.8103 0.2508 18 6 -0.5836 -5.7370 1.0088 19 8 0.0716 -6.5621 1.6158 20 7 -1.9286 -5.7493 1.0941 21 6 -2.6012 -6.7571 1.9177 22 6 -4.1153 -6.5505 1.8412 23 1 -4.4317 -6.5581 0.7982 24 6 -4.8245 -7.6767 2.5995 25 6 -6.3341 -7.4172 2.5822 26 6 -6.6143 -6.0407 3.1909 27 8 -5.9006 -5.0430 2.4578 28 6 -4.4812 -5.2074 2.4784 29 1 -0.4850 0.8401 -0.0004 30 1 3.9516 -2.4846 0.0027 31 1 4.1576 -6.7282 0.4121 32 1 1.7007 -6.8552 0.4326 33 1 -0.4882 -4.1923 -0.2833 34 1 -2.4513 -5.0913 0.6097 35 1 -2.3515 -7.7523 1.5500 36 1 -2.2726 -6.6589 2.9524 37 1 -4.6130 -8.6309 2.1168 38 1 -4.4706 -7.7016 3.6301 39 1 -6.6961 -7.4416 1.5544 40 1 -6.8423 -8.1848 3.1658 41 1 -7.6831 -5.8325 3.1422 42 1 -6.2888 -6.0300 4.2310 43 1 -4.1277 -5.1859 3.5093 44 1 -4.0134 -4.3990 1.9165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761669618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:01 Heat of formation + Delta-G solvation = -147.869785 kcal Electronic energy + Delta-G solvation = -28904.836988 eV Core-core repulsion = 24543.480694 eV Total energy + Delta-G solvation = -4361.356295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.81529 -41.76452 -40.66836 -40.11696 -38.13671 -36.57768 -35.54402 -34.34312 -34.29327 -32.28450 -31.05383 -29.83917 -27.43630 -26.99910 -26.01563 -24.21650 -23.47456 -22.80832 -21.94872 -21.09488 -20.13767 -19.68178 -19.22001 -18.31848 -17.37573 -17.20259 -16.97315 -16.89448 -16.56374 -16.45771 -16.27478 -15.96699 -15.77445 -15.59470 -15.34351 -15.22879 -15.04925 -14.90312 -14.31237 -14.05002 -13.91524 -13.70276 -13.56929 -13.43023 -13.03548 -12.90754 -12.56519 -12.34950 -12.18221 -12.16242 -12.03335 -11.72146 -11.66301 -11.32940 -11.25867 -11.00931 -10.80886 -10.45306 -10.14530 -9.53809 -8.72779 -8.50269 -6.15981 0.22393 0.47726 1.37312 1.45684 1.50955 1.59688 2.05309 2.14637 2.69759 2.90966 3.02480 3.15856 3.22482 3.47125 3.69473 3.74651 3.82363 3.96021 4.03046 4.17380 4.21429 4.32167 4.37810 4.50232 4.56230 4.60775 4.70129 4.72576 4.81275 4.93430 4.96237 5.01493 5.03292 5.09715 5.19039 5.23674 5.30592 5.34180 5.37646 5.46084 5.58105 5.89798 5.94597 6.08742 6.24288 6.92740 6.94486 7.45431 7.63989 8.69996 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010148 B = 0.003018 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.385993 B = 9274.382730 C =11854.815388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.008 4.008 3 Si 1.010 2.990 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.417 4.417 8 H 0.099 0.901 9 O -0.202 6.202 10 C 0.131 3.869 11 C -0.264 4.264 12 C 0.122 3.878 13 F -0.145 7.145 14 C -0.203 4.203 15 C -0.051 4.051 16 C 0.080 3.920 17 N -0.667 5.667 18 C 0.703 3.297 19 O -0.612 6.612 20 N -0.732 5.732 21 C 0.149 3.851 22 C -0.122 4.122 23 H 0.091 0.909 24 C -0.114 4.114 25 C -0.149 4.149 26 C 0.048 3.952 27 O -0.403 6.403 28 C 0.061 3.939 29 H 0.274 0.726 30 H 0.136 0.864 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.413 0.587 34 H 0.408 0.592 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.501 -13.331 3.302 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.208 4.208 3 Si 0.830 3.170 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.116 0.884 9 O -0.107 6.107 10 C 0.077 3.923 11 C -0.285 4.285 12 C 0.102 3.898 13 F -0.124 7.124 14 C -0.223 4.223 15 C -0.072 4.072 16 C -0.016 4.016 17 N -0.314 5.314 18 C 0.404 3.596 19 O -0.493 6.493 20 N -0.388 5.388 21 C 0.026 3.974 22 C -0.141 4.141 23 H 0.109 0.891 24 C -0.152 4.152 25 C -0.187 4.187 26 C -0.028 4.028 27 O -0.322 6.322 28 C -0.016 4.016 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.175 0.825 32 H 0.171 0.829 33 H 0.250 0.750 34 H 0.244 0.756 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.472 -13.737 3.762 17.679 hybrid contribution 0.409 1.505 -0.351 1.599 sum -10.063 -12.232 3.411 16.202 Atomic orbital electron populations 1.70111 1.07484 1.28978 1.47494 1.26356 0.96825 1.02046 0.95550 0.84762 0.77578 0.74947 0.79744 1.18340 1.19481 1.18749 1.21697 0.92510 0.81170 1.53891 0.88394 1.83894 1.34622 1.11749 1.80446 1.19138 0.90136 0.87116 0.95934 1.20921 0.93325 0.99087 1.15189 1.17456 0.76223 0.94263 1.01896 1.91428 1.29502 1.97353 1.94072 1.20881 0.94537 0.96521 1.10375 1.20874 0.92483 0.97123 0.96713 1.16888 0.82610 0.90774 1.11320 1.42207 1.04587 1.36736 1.47826 1.15977 0.82846 0.81458 0.79351 1.90841 1.65188 1.41936 1.51315 1.45070 1.03630 1.36841 1.53257 1.21257 0.90536 0.91131 0.94522 1.21953 0.93113 0.96804 1.02210 0.89111 1.21587 0.94956 0.97778 1.00879 1.22156 0.96168 0.97705 1.02676 1.22828 0.97445 0.87757 0.94777 1.87940 1.18404 1.51410 1.74469 1.22674 0.81286 0.97165 1.00440 0.91663 0.84630 0.82458 0.82881 0.75048 0.75587 0.90791 0.92193 0.89789 0.91003 0.91139 0.88734 0.87807 0.92688 0.92925 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.81 13.67 21.61 0.30 -50.51 16 2 C -0.01 -0.42 5.49 84.83 0.47 0.04 16 3 Si 1.01 40.84 29.55 68.60 2.03 42.87 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 7 C -0.42 -22.68 9.49 67.92 0.64 -22.03 16 8 H 0.10 5.00 5.20 -2.91 -0.02 4.99 16 9 O -0.20 -10.91 9.31 -22.84 -0.21 -11.12 16 10 C 0.13 6.14 6.66 22.68 0.15 6.29 16 11 C -0.26 -11.64 9.14 22.42 0.20 -11.43 16 12 C 0.12 4.71 7.29 22.37 0.16 4.87 16 13 F -0.14 -5.29 17.26 44.97 0.78 -4.51 16 14 C -0.20 -7.08 10.02 22.33 0.22 -6.86 16 15 C -0.05 -1.91 8.69 22.37 0.19 -1.72 16 16 C 0.08 3.31 6.33 38.22 0.24 3.56 16 17 N -0.67 -24.64 5.20 -316.71 -1.65 -26.29 16 18 C 0.70 23.94 8.41 179.06 1.51 25.44 16 19 O -0.61 -23.86 13.76 -4.01 -0.06 -23.92 16 20 N -0.73 -18.38 5.31 -478.52 -2.54 -20.93 16 21 C 0.15 3.05 5.07 86.38 0.44 3.49 16 22 C -0.12 -1.95 2.42 -10.70 -0.03 -1.98 16 23 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 24 C -0.11 -1.40 5.31 30.71 0.16 -1.24 16 25 C -0.15 -1.66 6.14 30.69 0.19 -1.48 16 26 C 0.05 0.69 6.84 72.01 0.49 1.18 16 27 O -0.40 -8.56 10.76 -148.98 -1.60 -10.17 16 28 C 0.06 1.20 5.97 72.01 0.43 1.63 16 29 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.14 6.05 5.64 -2.91 -0.02 6.03 16 31 H 0.16 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.15 5.46 6.19 -2.91 -0.02 5.44 16 33 H 0.41 14.72 8.58 -92.70 -0.80 13.92 16 34 H 0.41 8.85 7.71 -92.71 -0.71 8.14 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 43 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.09 1.83 7.27 -2.39 -0.02 1.82 16 Total: -1.00 -66.92 367.82 2.07 -64.84 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: -0.44 Total: 39.96 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.48 Total: -0.23 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -3.89 Total: -97.73 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -1.87 Total: -45.20 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.78 Total: -4.51 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -66.92 2.07 -64.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761669618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.026 kcal (2) G-P(sol) polarization free energy of solvation -66.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds