Wall clock time and date at job start Tue Mar 31 2020 20:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86798 * 120.00087 * 2 1 4 4 H 1.48498 * 109.47230 * 239.99792 * 3 2 1 5 5 H 1.48505 * 109.47263 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47506 * 119.99591 * 3 2 1 7 7 C 1.38638 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00136 * 180.02562 * 7 2 1 9 9 O 1.34813 * 119.99561 * 0.02562 * 7 2 1 10 10 C 1.35781 * 116.99616 * 185.12643 * 9 7 2 11 11 C 1.38742 * 120.08800 * 5.66157 * 10 9 7 12 12 C 1.38344 * 119.97676 * 180.02562 * 11 10 9 13 13 F 1.35097 * 119.92514 * 179.97438 * 12 11 10 14 14 C 1.38550 * 120.14943 * 359.74997 * 12 11 10 15 15 C 1.38194 * 120.17420 * 0.50846 * 14 12 11 16 16 C 1.38697 * 120.02090 * 359.49150 * 15 14 12 17 17 N 1.40143 * 120.07386 * 180.23246 * 16 15 14 18 18 C 1.34771 * 120.00131 * 344.33862 * 17 16 15 19 19 O 1.21601 * 119.99924 * 353.51702 * 18 17 16 20 20 N 1.34777 * 120.00015 * 173.51001 * 18 17 16 21 21 C 1.46500 * 119.99813 * 6.38440 * 20 18 17 22 22 C 1.52998 * 109.46800 * 89.99939 * 21 20 18 23 23 C 1.52999 * 109.46878 * 179.97438 * 22 21 20 24 24 O 1.42904 * 109.47288 * 180.02562 * 23 22 21 25 25 C 1.46505 * 119.99912 * 186.38529 * 20 18 17 26 26 C 1.52995 * 117.49900 * 15.56273 * 25 20 18 27 27 C 1.53003 * 117.49443 * 306.90229 * 25 20 18 28 28 H 0.97001 * 120.00283 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.01136 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.91289 * 180.25362 * 14 12 11 31 31 H 1.08001 * 119.99093 * 179.76698 * 15 14 12 32 32 H 0.96999 * 119.99685 * 164.33913 * 17 16 15 33 33 H 1.08999 * 109.46970 * 209.99649 * 21 20 18 34 34 H 1.08990 * 109.47209 * 330.00122 * 21 20 18 35 35 H 1.09005 * 109.47526 * 299.99809 * 22 21 20 36 36 H 1.09004 * 109.47229 * 59.99850 * 22 21 20 37 37 H 1.08999 * 109.47208 * 299.99903 * 23 22 21 38 38 H 1.08999 * 109.47069 * 60.00563 * 23 22 21 39 39 H 0.96696 * 114.00565 * 180.02562 * 24 23 22 40 40 H 1.08999 * 115.54920 * 161.23832 * 25 20 18 41 41 H 1.09007 * 117.50019 * 0.02562 * 26 25 20 42 42 H 1.09000 * 117.49724 * 145.02256 * 26 25 20 43 43 H 1.09004 * 117.49461 * 214.97631 * 27 25 20 44 44 H 1.08995 * 117.50147 * 359.97438 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6965 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0888 -1.2006 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0701 -3.5044 0.1092 11 6 3.4375 -3.4294 0.3315 12 6 4.1846 -4.5886 0.4413 13 9 5.5161 -4.5144 0.6572 14 6 3.5695 -5.8255 0.3349 15 6 2.2087 -5.9075 0.1082 16 6 1.4529 -4.7499 -0.0030 17 7 0.0720 -4.8317 -0.2281 18 6 -0.4749 -5.9898 -0.6477 19 8 0.2402 -6.9277 -0.9440 20 7 -1.8143 -6.1085 -0.7387 21 6 -2.6699 -4.9401 -0.5174 22 6 -2.9001 -4.2176 -1.8462 23 6 -3.7942 -2.9977 -1.6152 24 8 -4.0098 -2.3231 -2.8564 25 6 -2.4147 -7.4060 -1.0589 26 6 -1.5302 -8.6468 -0.9215 27 6 -1.9109 -8.1277 -2.3104 28 1 -0.4850 0.8400 -0.0004 29 1 3.9187 -2.4665 0.4180 30 1 4.1557 -6.7281 0.4253 31 1 1.7330 -6.8732 0.0220 32 1 -0.4900 -4.0548 -0.0819 33 1 -3.6274 -5.2631 -0.1088 34 1 -2.1850 -4.2625 0.1853 35 1 -1.9426 -3.8946 -2.2549 36 1 -3.3851 -4.8952 -2.5490 37 1 -4.7516 -3.3210 -1.2068 38 1 -3.3096 -2.3199 -0.9124 39 1 -4.5692 -1.5376 -2.7853 40 1 -3.4704 -7.5101 -0.8085 41 1 -0.5017 -8.4979 -0.5924 42 1 -2.0041 -9.5674 -0.5811 43 1 -2.6351 -8.7072 -2.8830 44 1 -1.1332 -7.6371 -2.8956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763075091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:32 Heat of formation + Delta-G solvation = -70.890825 kcal Electronic energy + Delta-G solvation = -30042.770240 eV Core-core repulsion = 25684.752003 eV Total energy + Delta-G solvation = -4358.018237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.20621 -40.82672 -39.09256 -37.27417 -36.93310 -35.92587 -35.26797 -33.51384 -32.39502 -31.16395 -29.36054 -28.17545 -25.53491 -25.36220 -23.43712 -22.32519 -22.20612 -21.65607 -21.28416 -19.60853 -18.36103 -18.06611 -17.64236 -16.99184 -16.83377 -15.93060 -15.56056 -15.44331 -15.20797 -14.97162 -14.93050 -14.58627 -14.27947 -14.10643 -13.66869 -13.58673 -13.50495 -13.21256 -13.10552 -12.78643 -12.60551 -12.23403 -12.14105 -11.64401 -11.58903 -11.29199 -11.15281 -11.10072 -11.06133 -10.91900 -10.69555 -10.56285 -10.27724 -9.90226 -9.81396 -9.70899 -9.12044 -8.94415 -8.41541 -7.84040 -6.99336 -6.60830 -4.17351 1.87708 2.14619 2.62158 3.07587 3.07843 3.09940 3.25033 3.81644 3.87795 4.07741 4.31651 4.41581 4.75370 4.88694 4.92538 4.96105 5.01269 5.12350 5.14227 5.14347 5.24768 5.32894 5.51667 5.54514 5.60156 5.61275 5.77489 5.81496 5.98228 6.06023 6.14980 6.17046 6.25189 6.42763 6.64313 6.69469 6.80929 6.93205 6.95202 7.10130 7.13748 7.23303 7.66940 7.70170 7.83787 8.14219 8.74559 8.86045 9.46649 10.56485 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008037 B = 0.004968 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.049196 B = 5634.885055 C = 8868.358108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.044 3.956 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.150 3.850 11 C -0.254 4.254 12 C 0.120 3.880 13 F -0.153 7.153 14 C -0.222 4.222 15 C -0.078 4.078 16 C 0.084 3.916 17 N -0.660 5.660 18 C 0.707 3.293 19 O -0.571 6.571 20 N -0.600 5.600 21 C 0.115 3.885 22 C -0.139 4.139 23 C 0.078 3.922 24 O -0.573 6.573 25 C 0.087 3.913 26 C -0.192 4.192 27 C -0.188 4.188 28 H 0.271 0.729 29 H 0.142 0.858 30 H 0.122 0.878 31 H 0.165 0.835 32 H 0.414 0.586 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.058 0.942 39 H 0.379 0.621 40 H 0.127 0.873 41 H 0.141 0.859 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.695 -8.566 -0.038 12.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.161 4.161 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.094 3.906 11 C -0.275 4.275 12 C 0.100 3.900 13 F -0.132 7.132 14 C -0.242 4.242 15 C -0.099 4.099 16 C -0.012 4.012 17 N -0.306 5.306 18 C 0.411 3.589 19 O -0.451 6.451 20 N -0.334 5.334 21 C -0.009 4.009 22 C -0.178 4.178 23 C 0.000 4.000 24 O -0.378 6.378 25 C -0.018 4.018 26 C -0.229 4.229 27 C -0.227 4.227 28 H 0.081 0.919 29 H 0.160 0.840 30 H 0.140 0.860 31 H 0.182 0.818 32 H 0.252 0.748 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.226 0.774 40 H 0.145 0.855 41 H 0.159 0.841 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.269 -9.464 -0.456 12.576 hybrid contribution 0.057 1.911 0.276 1.932 sum -8.213 -7.553 -0.180 11.159 Atomic orbital electron populations 1.69981 1.05878 1.27953 1.45738 1.25234 0.95910 0.98728 0.96212 0.85770 0.78779 0.79542 0.79384 1.19401 1.20223 1.19402 1.21259 0.91909 0.80367 1.53016 0.88978 1.83890 1.33861 1.11296 1.78697 1.18660 0.89659 0.86749 0.95483 1.20808 0.93879 0.98347 1.14468 1.17494 0.76605 0.94359 1.01556 1.91403 1.31891 1.97369 1.92511 1.20557 0.95381 0.95479 1.12817 1.21314 0.92477 0.98563 0.97509 1.16800 0.82182 0.91468 1.10717 1.42528 1.07201 1.13134 1.67787 1.15840 0.81550 0.83264 0.78274 1.90581 1.59438 1.38750 1.56373 1.46438 1.03827 1.08986 1.74102 1.21435 0.95617 0.87015 0.96823 1.21942 1.01457 0.96309 0.98115 1.22061 0.97723 0.93976 0.86243 1.86463 1.74162 1.45141 1.32067 1.21456 0.96186 0.81202 1.02906 1.23928 1.04276 0.95049 0.99642 1.23276 1.03811 1.03985 0.91624 0.91905 0.84014 0.86028 0.81784 0.74780 0.89718 0.89929 0.90463 0.90889 0.93989 0.92386 0.77430 0.85530 0.84116 0.89671 0.89120 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.87 13.67 55.48 0.76 -22.11 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 19.58 29.55 -169.99 -5.02 14.55 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.39 -10.19 9.44 30.88 0.29 -9.90 16 8 H 0.09 2.28 5.29 -52.49 -0.28 2.01 16 9 O -0.17 -4.49 9.07 0.00 0.00 -4.49 16 10 C 0.15 3.46 6.66 -38.94 -0.26 3.20 16 11 C -0.25 -5.59 9.11 -39.36 -0.36 -5.95 16 12 C 0.12 2.43 7.29 -39.43 -0.29 2.14 16 13 F -0.15 -2.97 17.26 2.25 0.04 -2.93 16 14 C -0.22 -4.18 10.02 -39.48 -0.40 -4.58 16 15 C -0.08 -1.52 8.84 -39.43 -0.35 -1.87 16 16 C 0.08 1.74 6.57 -83.43 -0.55 1.20 16 17 N -0.66 -12.31 5.23 -14.07 -0.07 -12.39 16 18 C 0.71 12.10 7.94 -86.92 -0.69 11.41 16 19 O -0.57 -10.52 8.87 5.28 0.05 -10.47 16 20 N -0.60 -8.15 2.84 -171.80 -0.49 -8.64 16 21 C 0.11 1.33 5.31 -4.04 -0.02 1.31 16 22 C -0.14 -1.80 5.91 -26.73 -0.16 -1.95 16 23 C 0.08 0.94 7.05 37.16 0.26 1.20 16 24 O -0.57 -7.64 13.66 -35.23 -0.48 -8.12 16 25 C 0.09 1.01 6.62 -67.93 -0.45 0.57 16 26 C -0.19 -2.34 9.63 -26.69 -0.26 -2.60 16 27 C -0.19 -2.28 9.89 -26.69 -0.26 -2.54 16 28 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.14 3.11 5.71 -52.49 -0.30 2.81 16 30 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 31 H 0.17 3.10 5.18 -52.61 -0.27 2.83 16 32 H 0.41 7.67 5.88 -40.82 -0.24 7.43 16 33 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 34 H 0.08 1.03 6.22 -51.93 -0.32 0.70 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.38 3.30 9.12 45.56 0.42 3.72 16 40 H 0.13 1.10 8.10 -51.93 -0.42 0.68 16 41 H 0.14 2.13 5.17 -52.15 -0.27 1.86 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.10 1.46 7.65 -51.93 -0.40 1.06 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -30.11 368.80 -7.84 -37.95 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -4.60 Total: 18.42 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -3.58 Total: -7.34 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.20 Total: -43.13 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.43 Total: -23.09 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.11 -7.84 -37.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763075091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.939 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds