Wall clock time and date at job start Tue Mar 31 2020 20:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86798 * 120.00087 * 2 1 4 4 H 1.48498 * 109.47230 * 239.99792 * 3 2 1 5 5 H 1.48505 * 109.47263 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47506 * 119.99591 * 3 2 1 7 7 C 1.38638 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00136 * 180.02562 * 7 2 1 9 9 O 1.34813 * 119.99561 * 0.02562 * 7 2 1 10 10 C 1.35781 * 116.99616 * 185.12643 * 9 7 2 11 11 C 1.38742 * 120.08800 * 5.66157 * 10 9 7 12 12 C 1.38344 * 119.97676 * 180.02562 * 11 10 9 13 13 F 1.35097 * 119.92514 * 179.97438 * 12 11 10 14 14 C 1.38550 * 120.14943 * 359.74997 * 12 11 10 15 15 C 1.38194 * 120.17420 * 0.50846 * 14 12 11 16 16 C 1.38697 * 120.02090 * 359.49150 * 15 14 12 17 17 N 1.40143 * 120.07386 * 180.23246 * 16 15 14 18 18 C 1.34771 * 120.00131 * 344.33862 * 17 16 15 19 19 O 1.21601 * 119.99924 * 353.51702 * 18 17 16 20 20 N 1.34777 * 120.00015 * 173.51001 * 18 17 16 21 21 C 1.46500 * 119.99813 * 6.38440 * 20 18 17 22 22 C 1.52998 * 109.46800 * 89.99939 * 21 20 18 23 23 C 1.52999 * 109.46878 * 179.97438 * 22 21 20 24 24 O 1.42904 * 109.47288 * 180.02562 * 23 22 21 25 25 C 1.46505 * 119.99912 * 186.38529 * 20 18 17 26 26 C 1.52995 * 117.49900 * 15.56273 * 25 20 18 27 27 C 1.53003 * 117.49443 * 306.90229 * 25 20 18 28 28 H 0.97001 * 120.00283 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.01136 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.91289 * 180.25362 * 14 12 11 31 31 H 1.08001 * 119.99093 * 179.76698 * 15 14 12 32 32 H 0.96999 * 119.99685 * 164.33913 * 17 16 15 33 33 H 1.08999 * 109.46970 * 209.99649 * 21 20 18 34 34 H 1.08990 * 109.47209 * 330.00122 * 21 20 18 35 35 H 1.09005 * 109.47526 * 299.99809 * 22 21 20 36 36 H 1.09004 * 109.47229 * 59.99850 * 22 21 20 37 37 H 1.08999 * 109.47208 * 299.99903 * 23 22 21 38 38 H 1.08999 * 109.47069 * 60.00563 * 23 22 21 39 39 H 0.96696 * 114.00565 * 180.02562 * 24 23 22 40 40 H 1.08999 * 115.54920 * 161.23832 * 25 20 18 41 41 H 1.09007 * 117.50019 * 0.02562 * 26 25 20 42 42 H 1.09000 * 117.49724 * 145.02256 * 26 25 20 43 43 H 1.09004 * 117.49461 * 214.97631 * 27 25 20 44 44 H 1.08995 * 117.50147 * 359.97438 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6965 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0888 -1.2006 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0701 -3.5044 0.1092 11 6 3.4375 -3.4294 0.3315 12 6 4.1846 -4.5886 0.4413 13 9 5.5161 -4.5144 0.6572 14 6 3.5695 -5.8255 0.3349 15 6 2.2087 -5.9075 0.1082 16 6 1.4529 -4.7499 -0.0030 17 7 0.0720 -4.8317 -0.2281 18 6 -0.4749 -5.9898 -0.6477 19 8 0.2402 -6.9277 -0.9440 20 7 -1.8143 -6.1085 -0.7387 21 6 -2.6699 -4.9401 -0.5174 22 6 -2.9001 -4.2176 -1.8462 23 6 -3.7942 -2.9977 -1.6152 24 8 -4.0098 -2.3231 -2.8564 25 6 -2.4147 -7.4060 -1.0589 26 6 -1.5302 -8.6468 -0.9215 27 6 -1.9109 -8.1277 -2.3104 28 1 -0.4850 0.8400 -0.0004 29 1 3.9187 -2.4665 0.4180 30 1 4.1557 -6.7281 0.4253 31 1 1.7330 -6.8732 0.0220 32 1 -0.4900 -4.0548 -0.0819 33 1 -3.6274 -5.2631 -0.1088 34 1 -2.1850 -4.2625 0.1853 35 1 -1.9426 -3.8946 -2.2549 36 1 -3.3851 -4.8952 -2.5490 37 1 -4.7516 -3.3210 -1.2068 38 1 -3.3096 -2.3199 -0.9124 39 1 -4.5692 -1.5376 -2.7853 40 1 -3.4704 -7.5101 -0.8085 41 1 -0.5017 -8.4979 -0.5924 42 1 -2.0041 -9.5674 -0.5811 43 1 -2.6351 -8.7072 -2.8830 44 1 -1.1332 -7.6371 -2.8956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763075091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:31 Heat of formation + Delta-G solvation = -90.557051 kcal Electronic energy + Delta-G solvation = -30043.623032 eV Core-core repulsion = 25684.752003 eV Total energy + Delta-G solvation = -4358.871028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.81157 -42.18028 -40.70513 -38.61575 -38.07765 -37.36474 -36.46048 -34.85281 -34.28050 -32.28081 -31.04104 -29.77188 -27.39776 -26.41957 -24.72933 -23.87414 -23.22048 -22.83270 -22.63135 -20.95681 -20.15891 -19.57524 -18.89823 -18.44099 -18.00978 -17.27175 -16.94534 -16.85700 -16.66139 -16.46682 -16.25549 -15.97816 -15.84825 -15.51982 -15.25833 -15.11660 -14.99490 -14.42322 -14.14270 -13.97601 -13.90709 -13.87297 -13.47936 -13.40552 -13.13836 -12.65022 -12.47521 -12.28490 -12.17915 -12.16722 -12.07936 -11.96116 -11.67062 -11.27785 -11.15678 -10.87248 -10.81920 -10.47512 -9.61690 -9.45397 -8.63242 -8.50330 -6.15133 0.22532 0.46427 1.36476 1.41894 1.44682 1.49599 1.88010 2.13844 2.61352 2.70017 3.04675 3.08351 3.18273 3.40636 3.46692 3.76674 3.91163 4.00378 4.10461 4.14691 4.17814 4.19508 4.32105 4.37379 4.39364 4.53245 4.58391 4.61226 4.70965 4.91167 4.95222 4.97427 5.03330 5.14981 5.21644 5.22550 5.26982 5.37486 5.45782 5.60055 5.76247 5.80923 5.94080 6.08882 6.75545 6.89758 6.94278 7.36830 7.62516 8.69891 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008037 B = 0.004968 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.049196 B = 5634.885055 C = 8868.358108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.006 4.006 3 Si 1.008 2.992 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.416 4.416 8 H 0.096 0.904 9 O -0.205 6.205 10 C 0.122 3.878 11 C -0.260 4.260 12 C 0.112 3.888 13 F -0.146 7.146 14 C -0.198 4.198 15 C -0.080 4.080 16 C 0.085 3.915 17 N -0.665 5.665 18 C 0.701 3.299 19 O -0.586 6.586 20 N -0.593 5.593 21 C 0.116 3.884 22 C -0.132 4.132 23 C 0.080 3.920 24 O -0.598 6.598 25 C 0.087 3.913 26 C -0.194 4.194 27 C -0.191 4.191 28 H 0.275 0.725 29 H 0.135 0.865 30 H 0.156 0.844 31 H 0.175 0.825 32 H 0.412 0.588 33 H 0.131 0.869 34 H 0.070 0.930 35 H 0.031 0.969 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.039 0.961 39 H 0.397 0.603 40 H 0.171 0.829 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.888 -10.051 0.367 14.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.206 4.206 3 Si 0.828 3.172 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.492 4.492 8 H 0.113 0.887 9 O -0.111 6.111 10 C 0.068 3.932 11 C -0.280 4.280 12 C 0.092 3.908 13 F -0.125 7.125 14 C -0.218 4.218 15 C -0.100 4.100 16 C -0.011 4.011 17 N -0.312 5.312 18 C 0.404 3.596 19 O -0.468 6.468 20 N -0.326 5.326 21 C -0.007 4.007 22 C -0.171 4.171 23 C 0.002 3.998 24 O -0.407 6.407 25 C -0.017 4.017 26 C -0.232 4.232 27 C -0.229 4.229 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.174 0.826 31 H 0.192 0.808 32 H 0.250 0.750 33 H 0.149 0.851 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.247 0.753 40 H 0.188 0.812 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.137 0.863 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.483 -10.988 -0.052 14.514 hybrid contribution 0.451 2.133 0.115 2.183 sum -9.032 -8.854 0.062 12.649 Atomic orbital electron populations 1.70088 1.07309 1.28925 1.47309 1.26297 0.96880 1.01835 0.95559 0.84791 0.77650 0.75142 0.79626 1.18936 1.19246 1.18495 1.21635 0.92383 0.81132 1.54038 0.88701 1.83868 1.34578 1.11803 1.80820 1.19003 0.90308 0.86956 0.96909 1.20884 0.93801 0.98954 1.14404 1.17488 0.76888 0.94265 1.02157 1.91417 1.31253 1.97348 1.92479 1.20944 0.95227 0.96129 1.09489 1.21527 0.92790 0.98381 0.97309 1.17071 0.83458 0.91189 1.09381 1.42600 1.06467 1.13833 1.68282 1.16057 0.82937 0.82424 0.78173 1.90580 1.60373 1.38889 1.56939 1.46566 1.02618 1.10554 1.72846 1.21587 0.97020 0.86173 0.95900 1.21865 0.99392 0.97076 0.98765 1.22092 0.99169 0.93068 0.85519 1.86410 1.74973 1.46380 1.32931 1.21969 0.97830 0.79684 1.02183 1.23827 1.03057 0.96618 0.99682 1.23238 1.03644 1.04412 0.91641 0.91629 0.84694 0.82606 0.80785 0.75028 0.85144 0.91203 0.95043 0.90125 0.89989 0.94256 0.75339 0.81221 0.87227 0.86811 0.86288 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.67 13.67 21.61 0.30 -49.38 16 2 C -0.01 -0.29 5.49 84.83 0.47 0.17 16 3 Si 1.01 40.80 29.55 68.60 2.03 42.83 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 7 C -0.42 -22.76 9.44 67.92 0.64 -22.12 16 8 H 0.10 4.92 5.29 -2.91 -0.02 4.91 16 9 O -0.21 -11.20 9.07 -22.91 -0.21 -11.41 16 10 C 0.12 5.86 6.66 22.68 0.15 6.01 16 11 C -0.26 -11.71 9.11 22.42 0.20 -11.51 16 12 C 0.11 4.47 7.29 22.37 0.16 4.64 16 13 F -0.15 -5.51 17.26 44.97 0.78 -4.73 16 14 C -0.20 -7.14 10.02 22.33 0.22 -6.91 16 15 C -0.08 -3.06 8.84 22.37 0.20 -2.86 16 16 C 0.09 3.65 6.57 38.22 0.25 3.90 16 17 N -0.67 -25.74 5.23 -316.69 -1.66 -27.39 16 18 C 0.70 24.17 7.94 179.06 1.42 25.60 16 19 O -0.59 -21.73 8.87 -4.03 -0.04 -21.76 16 20 N -0.59 -15.44 2.84 -815.71 -2.31 -17.76 16 21 C 0.12 2.53 5.31 86.38 0.46 2.98 16 22 C -0.13 -3.37 5.91 30.59 0.18 -3.19 16 23 C 0.08 1.85 7.05 71.98 0.51 2.36 16 24 O -0.60 -15.79 13.66 -148.98 -2.04 -17.83 16 25 C 0.09 1.77 6.62 44.99 0.30 2.07 16 26 C -0.19 -4.35 9.63 30.62 0.29 -4.05 16 27 C -0.19 -4.27 9.89 30.62 0.30 -3.97 16 28 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 29 H 0.14 6.17 5.71 -2.91 -0.02 6.15 16 30 H 0.16 4.56 8.06 -2.91 -0.02 4.54 16 31 H 0.18 6.44 5.18 -6.32 -0.03 6.41 16 32 H 0.41 16.18 5.88 -92.71 -0.55 15.64 16 33 H 0.13 1.71 8.04 -2.39 -0.02 1.69 16 34 H 0.07 1.74 6.22 -2.39 -0.01 1.73 16 35 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.40 6.71 9.12 -74.06 -0.68 6.04 16 40 H 0.17 2.05 8.10 -2.39 -0.02 2.03 16 41 H 0.11 3.25 5.17 -7.46 -0.04 3.21 16 42 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 44 H 0.06 1.87 7.65 -2.39 -0.02 1.85 16 Total: -1.00 -68.98 368.80 2.43 -66.55 By element: Atomic # 1 Polarization: 47.96 SS G_CDS: -0.19 Total: 47.77 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 5.76 Total: -6.89 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -3.67 Total: -94.53 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -2.28 Total: -51.00 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.78 Total: -4.73 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -68.98 2.43 -66.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763075091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.010 kcal (2) G-P(sol) polarization free energy of solvation -68.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds