Wall clock time and date at job start Tue Mar 31 2020 21:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 116.99838 * 2 1 4 4 O 1.20819 * 120.00351 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99618 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46945 * 300.00079 * 5 3 2 7 7 N 1.46905 * 109.46876 * 180.02562 * 5 3 2 8 8 C 1.46901 * 110.99870 * 85.00155 * 7 5 3 9 9 C 1.50697 * 109.46943 * 180.02562 * 8 7 5 10 10 O 1.21282 * 120.00396 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99767 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99719 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46785 * 179.97438 * 12 11 9 14 14 H 1.07995 * 120.00107 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99714 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00121 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00018 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47472 * 59.99972 * 17 15 13 19 19 H 1.48506 * 109.47240 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.47154 * 299.99975 * 17 15 13 21 21 C 1.50702 * 109.47188 * 60.00222 * 5 3 2 22 22 C 1.38268 * 119.97366 * 79.72534 * 21 5 3 23 23 C 1.38177 * 120.02525 * 179.76598 * 22 21 5 24 24 C 1.38477 * 119.97116 * 0.50902 * 23 22 21 25 25 F 1.35105 * 120.02476 * 179.76619 * 24 23 22 26 26 C 1.38433 * 119.95282 * 359.74449 * 24 23 22 27 27 C 1.50696 * 120.01709 * 180.02562 * 26 24 23 28 28 C 1.38223 * 119.97256 * 259.99805 * 21 5 3 29 29 H 1.08999 * 109.47423 * 299.99680 * 1 2 3 30 30 H 1.08998 * 109.47307 * 59.99911 * 1 2 3 31 31 H 1.09004 * 109.46968 * 179.97438 * 1 2 3 32 32 H 1.00901 * 110.99869 * 321.04866 * 7 5 3 33 33 H 1.09004 * 109.47031 * 299.99620 * 8 7 5 34 34 H 1.08995 * 109.47111 * 59.99900 * 8 7 5 35 35 H 0.96997 * 120.00713 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.47195 * 299.98994 * 12 11 9 37 37 H 1.08995 * 109.47470 * 59.99670 * 12 11 9 38 38 H 0.97000 * 119.99968 * 179.97438 * 16 15 13 39 39 H 1.08003 * 119.98776 * 0.02562 * 22 21 5 40 40 H 1.07994 * 120.01022 * 180.22600 * 23 22 21 41 41 H 1.09000 * 109.47248 * 269.97963 * 27 26 24 42 42 H 1.09004 * 109.46977 * 29.97338 * 27 26 24 43 43 H 1.09003 * 109.47419 * 149.97312 * 27 26 24 44 44 H 1.07992 * 119.98662 * 359.95647 * 28 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7805 0.8892 7 7 3.9828 2.6836 0.0002 8 6 4.0181 3.2214 1.3667 9 6 4.4479 4.6652 1.3274 10 8 4.7006 5.1940 0.2656 11 7 4.5526 5.3685 2.4723 12 6 4.9711 6.7720 2.4340 13 6 5.0071 7.3238 3.8360 14 1 4.7442 6.6923 4.6717 15 6 5.3757 8.6347 4.0516 16 7 5.6954 9.4039 3.0337 17 14 5.4211 9.3185 5.7893 18 1 6.3850 8.5362 6.6041 19 1 5.8451 10.7412 5.7506 20 1 4.0685 9.2220 6.3948 21 6 4.1046 0.5919 -1.2314 22 6 4.0985 1.2522 -2.4462 23 6 4.5962 0.6289 -3.5745 24 6 5.0917 -0.6614 -3.4903 25 9 5.5743 -1.2736 -4.5938 26 6 5.0925 -1.3235 -2.2746 27 6 5.6319 -2.7275 -2.1811 28 6 4.5990 -0.6961 -1.1461 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.3826 3.2384 -0.5914 33 1 3.0252 3.1503 1.8109 34 1 4.7257 2.6474 1.9649 35 1 4.3510 4.9456 3.3216 36 1 5.9638 6.8432 1.9897 37 1 4.2633 7.3461 1.8361 38 1 5.9544 10.3263 3.1854 39 1 3.7083 2.2571 -2.5125 40 1 4.5947 1.1462 -4.5225 41 1 4.8259 -3.4391 -2.3607 42 1 6.4130 -2.8672 -2.9285 43 1 6.0469 -2.8920 -1.1867 44 1 4.5999 -1.2121 -0.1975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767884655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:03 Heat of formation + Delta-G solvation = -166.444359 kcal Electronic energy + Delta-G solvation = -28514.066469 eV Core-core repulsion = 24151.904720 eV Total energy + Delta-G solvation = -4362.161749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.91233 -41.99712 -40.49109 -40.13684 -37.98592 -36.66429 -36.05124 -34.35192 -33.78628 -32.63418 -30.01291 -29.23356 -28.17838 -27.62910 -25.94606 -24.28355 -23.63191 -22.90389 -21.46479 -21.23251 -19.33901 -18.83609 -18.54256 -18.18922 -17.85643 -17.53691 -17.26721 -17.09969 -16.68386 -16.65471 -16.28005 -15.82495 -15.31661 -15.19025 -15.00467 -14.53813 -14.49921 -14.27367 -14.19828 -14.17098 -14.07650 -13.96140 -13.66141 -13.25275 -13.11227 -13.00035 -12.93644 -12.77758 -12.66635 -12.49692 -12.23637 -11.95957 -11.84697 -11.83176 -11.50917 -10.79676 -10.78435 -9.95720 -9.84977 -9.75347 -9.52366 -8.28496 -6.45311 0.03090 0.26359 0.98126 1.43322 1.47615 1.55698 1.61480 1.77423 2.21900 2.40689 2.61942 3.06246 3.08547 3.26410 3.45909 3.68698 3.74521 3.86152 3.91859 3.99583 4.27293 4.28338 4.30172 4.32444 4.36665 4.42079 4.64150 4.69493 4.82989 4.83393 4.99254 5.10446 5.18082 5.22585 5.24912 5.25836 5.31024 5.37336 5.48658 5.58533 5.72489 5.84862 5.89531 5.91749 6.55554 6.65679 6.92063 7.24016 7.50636 8.83533 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015269 B = 0.002236 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.290916 B =12518.514084 C =13522.437898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.349 6.349 3 C 0.439 3.561 4 O -0.536 6.536 5 C 0.145 3.855 6 H 0.165 0.835 7 N -0.648 5.648 8 C 0.049 3.951 9 C 0.495 3.505 10 O -0.591 6.591 11 N -0.707 5.707 12 C 0.268 3.732 13 C -0.556 4.556 14 H 0.085 0.915 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.985 3.015 18 H -0.260 1.260 19 H -0.287 1.287 20 H -0.263 1.263 21 C -0.084 4.084 22 C -0.084 4.084 23 C -0.158 4.158 24 C 0.082 3.918 25 F -0.146 7.146 26 C -0.121 4.121 27 C -0.112 4.112 28 C -0.062 4.062 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.134 0.866 32 H 0.352 0.648 33 H 0.080 0.920 34 H 0.143 0.857 35 H 0.409 0.591 36 H -0.012 1.012 37 H -0.016 1.016 38 H 0.268 0.732 39 H 0.122 0.878 40 H 0.141 0.859 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.690 -29.980 -5.304 31.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.263 6.263 3 C 0.281 3.719 4 O -0.425 6.425 5 C 0.033 3.967 6 H 0.183 0.817 7 N -0.280 5.280 8 C -0.082 4.082 9 C 0.282 3.718 10 O -0.471 6.471 11 N -0.358 5.358 12 C 0.145 3.855 13 C -0.594 4.594 14 H 0.103 0.897 15 C -0.198 4.198 16 N -0.570 5.570 17 Si 0.808 3.192 18 H -0.185 1.185 19 H -0.212 1.212 20 H -0.187 1.187 21 C -0.085 4.085 22 C -0.102 4.102 23 C -0.177 4.177 24 C 0.063 3.937 25 F -0.124 7.124 26 C -0.122 4.122 27 C -0.169 4.169 28 C -0.080 4.080 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.152 0.848 32 H 0.174 0.826 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.245 0.755 36 H 0.006 0.994 37 H 0.002 0.998 38 H 0.077 0.923 39 H 0.140 0.860 40 H 0.159 0.841 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.112 0.888 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.003 -29.289 -6.150 30.524 hybrid contribution -1.133 1.322 0.358 1.778 sum -7.136 -27.967 -5.793 29.438 Atomic orbital electron populations 1.23556 0.75146 1.05771 1.02256 1.86530 1.24604 1.32159 1.83036 1.25309 0.93617 0.81727 0.71231 1.90726 1.67477 1.37565 1.46745 1.20417 0.84394 0.90961 1.00904 0.81735 1.60613 1.56047 1.01136 1.10248 1.21952 1.03331 0.91197 0.91734 1.21227 0.77324 0.89624 0.83625 1.90654 1.52043 1.72804 1.31638 1.46137 1.67486 1.13075 1.09104 1.18515 0.92608 0.77593 0.96821 1.21599 1.47715 0.97577 0.92486 0.89652 1.26093 0.93987 0.97103 1.02570 1.70140 1.45496 1.08010 1.33397 0.85199 0.79295 0.76961 0.77706 1.18450 1.21224 1.18712 1.19312 1.01532 0.94967 0.92713 1.20874 0.97940 0.99580 0.91829 1.21207 1.01722 0.94105 1.00672 1.17820 1.00301 0.92254 0.83316 1.91459 1.85931 1.83007 1.52040 1.20179 1.01667 0.98931 0.91404 1.20793 1.01349 0.90293 1.04441 1.21024 0.95129 0.92589 0.99266 0.91951 0.92656 0.84755 0.82624 0.90251 0.83931 0.75482 0.99410 0.99788 0.92280 0.85979 0.84066 0.89666 0.91766 0.88753 0.81225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.35 -5.79 10.48 -51.39 -0.54 -6.33 16 3 C 0.44 9.09 7.06 71.24 0.50 9.59 16 4 O -0.54 -14.97 15.05 21.99 0.33 -14.64 16 5 C 0.15 2.60 2.70 43.42 0.12 2.71 16 6 H 0.17 1.72 7.66 -2.39 -0.02 1.70 16 7 N -0.65 -16.61 5.19 -503.36 -2.61 -19.23 16 8 C 0.05 1.26 5.86 85.56 0.50 1.76 16 9 C 0.50 19.63 7.87 87.66 0.69 20.32 16 10 O -0.59 -29.52 16.20 -3.03 -0.05 -29.57 16 11 N -0.71 -29.59 5.55 -466.79 -2.59 -32.18 16 12 C 0.27 14.80 5.43 85.63 0.46 15.26 16 13 C -0.56 -30.25 9.28 25.60 0.24 -30.01 16 14 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 15 C 0.00 0.11 5.46 84.65 0.46 0.57 16 16 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 17 Si 0.99 42.29 29.54 68.60 2.03 44.32 16 18 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 19 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 21 C -0.08 -1.53 4.88 -19.86 -0.10 -1.62 16 22 C -0.08 -1.80 9.32 22.26 0.21 -1.60 16 23 C -0.16 -3.25 10.03 22.31 0.22 -3.03 16 24 C 0.08 1.62 7.24 22.37 0.16 1.79 16 25 F -0.15 -3.06 16.48 44.97 0.74 -2.32 16 26 C -0.12 -1.87 5.89 -19.82 -0.12 -1.99 16 27 C -0.11 -1.14 9.84 71.23 0.70 -0.44 16 28 C -0.06 -0.85 9.32 22.26 0.21 -0.64 16 29 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 30 H 0.05 0.79 8.13 -2.39 -0.02 0.78 16 31 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.35 10.80 6.80 -89.69 -0.61 10.19 16 33 H 0.08 1.82 7.62 -2.39 -0.02 1.81 16 34 H 0.14 2.52 8.05 -2.39 -0.02 2.51 16 35 H 0.41 13.77 8.32 -92.71 -0.77 13.00 16 36 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 37 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.12 2.87 7.26 -2.91 -0.02 2.85 16 40 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.74 7.64 -2.38 -0.02 0.72 16 43 H 0.09 0.58 8.09 -2.39 -0.02 0.56 16 44 H 0.17 1.12 8.03 -2.91 -0.02 1.10 16 Total: -1.00 -79.32 386.08 2.72 -76.60 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -0.33 Total: 25.56 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 5.46 Total: 14.22 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -4.92 Total: -107.84 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.26 Total: -50.54 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.74 Total: -2.32 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -79.32 2.72 -76.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767884655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.843 kcal (2) G-P(sol) polarization free energy of solvation -79.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds