Wall clock time and date at job start Tue Mar 31 2020 21:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37837 * 120.04048 * 2 1 4 4 C 1.38514 * 120.33393 * 180.02562 * 3 2 1 5 5 C 1.38071 * 120.40588 * 0.22774 * 4 3 2 6 6 C 1.38813 * 120.06282 * 359.49284 * 5 4 3 7 7 N 1.39288 * 120.16357 * 180.27136 * 6 5 4 8 8 C 1.34781 * 120.00031 * 19.98029 * 7 6 5 9 9 O 1.21278 * 119.99573 * 5.40274 * 8 7 6 10 10 C 1.50692 * 120.00449 * 185.39495 * 8 7 6 11 11 C 1.50699 * 109.47422 * 180.02562 * 10 8 7 12 12 C 1.37639 * 120.12419 * 264.99889 * 11 10 8 13 13 C 1.38620 * 120.24425 * 179.97438 * 12 11 10 14 14 C 1.38648 * 120.50468 * 0.02562 * 13 12 11 15 15 C 1.37603 * 120.24621 * 0.02562 * 14 13 12 16 16 C 1.40692 * 120.12923 * 84.72430 * 11 10 8 17 17 C 1.41404 * 120.24445 * 359.97438 * 16 11 10 18 18 H 1.07995 * 119.99935 * 330.65753 * 17 16 11 19 19 C 1.39945 * 119.99829 * 150.65896 * 17 16 11 20 20 N 1.30822 * 119.99528 * 167.82464 * 19 17 16 21 21 Si 1.86796 * 120.00234 * 347.82451 * 19 17 16 22 22 H 1.48493 * 109.47304 * 95.15221 * 21 19 17 23 23 H 1.48506 * 109.46846 * 215.15096 * 21 19 17 24 24 H 1.48503 * 109.47010 * 335.14713 * 21 19 17 25 25 C 1.39646 * 120.04084 * 179.97438 * 2 1 3 26 26 C 1.47525 * 120.19863 * 359.97438 * 25 2 1 27 27 N 1.34781 * 119.99971 * 270.00325 * 26 25 2 28 28 O 1.21589 * 119.99929 * 90.00126 * 26 25 2 29 29 H 1.08996 * 109.46943 * 90.00221 * 1 2 3 30 30 H 1.09001 * 109.47026 * 210.00174 * 1 2 3 31 31 H 1.09001 * 109.47297 * 329.99866 * 1 2 3 32 32 H 1.08000 * 119.83573 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.80418 * 179.97438 * 4 3 2 34 34 H 1.07997 * 119.96871 * 179.74734 * 5 4 3 35 35 H 0.96996 * 120.00503 * 199.98058 * 7 6 5 36 36 H 1.09004 * 109.47418 * 300.00681 * 10 8 7 37 37 H 1.09000 * 109.47156 * 60.00069 * 10 8 7 38 38 H 1.08004 * 119.87823 * 0.02562 * 12 11 10 39 39 H 1.08001 * 119.74599 * 179.97438 * 13 12 11 40 40 H 1.07995 * 119.88036 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.12391 * 179.97438 * 15 14 13 42 42 H 0.97003 * 119.99719 * 179.97438 * 20 19 17 43 43 H 0.96998 * 119.99781 * 359.97438 * 27 26 25 44 44 H 0.96998 * 119.99475 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1932 0.0000 4 6 3.5822 1.2003 -0.0005 5 6 4.2870 0.0131 -0.0058 6 6 3.6091 -1.1982 0.0000 7 7 4.3181 -2.3971 0.0004 8 6 5.6069 -2.4177 0.3943 9 8 6.1206 -1.4139 0.8407 10 6 6.4095 -3.6880 0.2803 11 6 7.8088 -3.4452 0.7844 12 6 8.8141 -3.1200 -0.0977 13 6 10.1020 -2.8956 0.3634 14 6 10.3930 -2.9961 1.7152 15 6 9.4039 -3.3209 2.6149 16 6 8.0913 -3.5443 2.1591 17 6 7.0651 -3.8714 3.0753 18 1 6.0431 -3.5947 2.8628 19 6 7.3740 -4.5538 4.2574 20 7 6.4824 -4.6483 5.2101 21 14 9.0592 -5.3298 4.4749 22 1 9.9459 -4.3905 5.2074 23 1 8.9273 -6.5909 5.2481 24 1 9.6439 -5.6252 3.1422 25 6 2.2061 -1.2089 0.0005 26 6 1.4738 -2.4895 0.0017 27 7 1.1397 -3.0737 1.1694 28 8 1.1717 -3.0180 -1.0508 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.6550 2.1274 -0.0004 33 1 4.1141 2.1402 -0.0009 34 1 5.3669 0.0269 -0.0103 35 1 3.8844 -3.2172 -0.2828 36 1 5.9393 -4.4698 0.8768 37 1 6.4481 -4.0010 -0.7631 38 1 8.5986 -3.0386 -1.1529 39 1 10.8848 -2.6414 -0.3359 40 1 11.4000 -2.8196 2.0634 41 1 9.6329 -3.3991 3.6675 42 1 6.6964 -5.1216 6.0294 43 1 1.3811 -2.6523 2.0091 44 1 0.6579 -3.9156 1.1701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776829326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:03 Heat of formation + Delta-G solvation = -30.808221 kcal Electronic energy + Delta-G solvation = -28742.586026 eV Core-core repulsion = 24817.075126 eV Total energy + Delta-G solvation = -3925.510900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.85859 -39.43711 -38.20582 -37.57310 -34.79297 -33.76181 -33.63374 -32.55905 -31.92063 -30.42306 -29.99343 -27.36600 -26.78681 -24.95474 -23.84350 -22.48313 -21.47074 -20.68690 -20.20176 -19.45108 -18.08834 -17.42592 -17.30389 -16.92471 -16.55606 -15.78300 -15.53632 -15.33604 -14.92654 -14.41169 -14.12156 -14.01257 -13.80649 -13.76645 -13.67035 -13.54385 -13.15445 -12.72987 -12.44867 -12.33370 -12.19621 -11.98721 -11.82715 -11.52360 -11.49273 -11.24393 -10.86037 -10.75873 -10.39162 -10.27007 -10.15331 -9.82674 -9.69271 -9.63388 -9.26707 -9.17475 -8.75476 -7.93831 -7.63104 -7.58047 -6.96689 -4.54435 1.11537 1.37525 2.41133 2.48671 2.67153 2.99234 3.09066 3.16615 3.28955 3.30130 3.43076 3.79963 3.94744 4.47971 4.67676 4.77177 4.86794 5.05749 5.23343 5.34620 5.43561 5.48385 5.50186 5.59435 5.72210 5.75286 5.81912 6.00430 6.03042 6.10628 6.19469 6.25836 6.35331 6.50484 6.53390 6.59140 6.61089 6.63521 6.89517 7.06828 7.15248 7.16631 7.35238 7.55407 7.60843 7.69388 7.83750 8.08151 8.08890 8.28798 8.46747 8.61236 8.76605 10.05279 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.003474 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.816227 B = 8058.012841 C = 8947.646943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.031 4.031 3 C -0.154 4.154 4 C -0.075 4.075 5 C -0.150 4.150 6 C 0.207 3.793 7 N -0.679 5.679 8 C 0.517 3.483 9 O -0.490 6.490 10 C -0.073 4.073 11 C -0.171 4.171 12 C -0.066 4.066 13 C -0.241 4.241 14 C -0.078 4.078 15 C -0.232 4.232 16 C 0.110 3.890 17 C -0.440 4.440 18 H 0.088 0.912 19 C 0.082 3.918 20 N -0.813 5.813 21 Si 0.913 3.087 22 H -0.273 1.273 23 H -0.295 1.295 24 H -0.240 1.240 25 C -0.183 4.183 26 C 0.575 3.425 27 N -0.844 5.844 28 O -0.539 6.539 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.162 0.838 35 H 0.409 0.591 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.284 0.716 43 H 0.407 0.593 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.671 4.986 -6.767 12.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.032 4.032 3 C -0.173 4.173 4 C -0.093 4.093 5 C -0.170 4.170 6 C 0.109 3.891 7 N -0.322 5.322 8 C 0.307 3.693 9 O -0.362 6.362 10 C -0.113 4.113 11 C -0.173 4.173 12 C -0.085 4.085 13 C -0.260 4.260 14 C -0.096 4.096 15 C -0.251 4.251 16 C 0.107 3.893 17 C -0.469 4.469 18 H 0.106 0.894 19 C -0.136 4.136 20 N -0.437 5.437 21 Si 0.740 3.260 22 H -0.199 1.199 23 H -0.223 1.223 24 H -0.163 1.163 25 C -0.189 4.189 26 C 0.359 3.641 27 N -0.407 5.407 28 O -0.416 6.416 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.179 0.821 35 H 0.244 0.756 36 H 0.123 0.877 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.236 0.764 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -9.449 5.349 -6.953 12.894 hybrid contribution 0.332 -0.821 0.735 1.151 sum -9.117 4.528 -6.218 11.928 Atomic orbital electron populations 1.20843 0.90886 1.02826 1.02833 1.19545 0.95552 0.91180 0.96956 1.20835 0.94298 0.97003 1.05170 1.21206 0.93831 0.98055 0.96244 1.21725 1.02901 0.90016 1.02403 1.17733 0.88840 0.87038 0.95475 1.43815 1.13205 1.09192 1.65982 1.21477 0.80187 0.92128 0.75542 1.90605 1.69677 1.35187 1.40717 1.20323 0.94552 0.94426 1.01972 1.18964 0.92088 1.13028 0.93246 1.20446 0.93230 0.97726 0.97071 1.20334 0.96164 1.14578 0.94922 1.20589 0.97158 0.98276 0.93621 1.20922 0.94739 1.11800 0.97607 1.17478 0.91884 0.88624 0.91341 1.19430 0.96122 1.31081 1.00280 0.89436 1.26167 0.99009 0.94421 0.94000 1.69652 1.36225 1.32860 1.04989 0.86316 0.81750 0.77618 0.80266 1.19937 1.22265 1.16275 1.19271 0.91925 0.93457 1.14231 1.18188 0.77885 0.84194 0.83848 1.43948 1.60682 1.27331 1.08783 1.90849 1.54455 1.64954 1.31349 0.90632 0.91788 0.90878 0.85731 0.85451 0.82104 0.75578 0.87748 0.89632 0.88961 0.88888 0.88923 0.88537 0.90516 0.76382 0.76581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.62 36.01 0.35 -0.76 16 2 C -0.03 -0.38 5.91 -104.24 -0.62 -0.99 16 3 C -0.15 -1.76 9.68 -39.63 -0.38 -2.14 16 4 C -0.07 -0.95 10.03 -39.54 -0.40 -1.35 16 5 C -0.15 -2.36 8.77 -39.43 -0.35 -2.71 16 6 C 0.21 3.25 6.51 -83.48 -0.54 2.70 16 7 N -0.68 -10.68 5.22 -9.69 -0.05 -10.73 16 8 C 0.52 9.65 7.27 -10.99 -0.08 9.57 16 9 O -0.49 -10.77 12.93 5.56 0.07 -10.70 16 10 C -0.07 -1.34 5.19 -29.04 -0.15 -1.49 16 11 C -0.17 -3.78 4.43 -103.92 -0.46 -4.24 16 12 C -0.07 -1.38 9.66 -39.66 -0.38 -1.76 16 13 C -0.24 -5.01 10.05 -39.29 -0.39 -5.40 16 14 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 15 C -0.23 -5.61 6.88 -38.87 -0.27 -5.88 16 16 C 0.11 2.71 5.19 -106.82 -0.55 2.16 16 17 C -0.44 -11.45 8.63 -37.74 -0.33 -11.77 16 18 H 0.09 2.37 6.95 -52.49 -0.36 2.01 16 19 C 0.08 2.10 5.48 -17.34 -0.09 2.01 16 20 N -0.81 -21.11 13.93 55.55 0.77 -20.34 16 21 Si 0.91 20.52 24.36 -169.99 -4.14 16.38 16 22 H -0.27 -6.05 6.78 56.52 0.38 -5.67 16 23 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.24 -5.46 6.42 56.52 0.36 -5.10 16 25 C -0.18 -2.55 5.64 -104.81 -0.59 -3.14 16 26 C 0.57 7.70 4.84 -12.47 -0.06 7.64 16 27 N -0.84 -8.44 8.87 30.46 0.27 -8.17 16 28 O -0.54 -8.87 17.94 5.29 0.09 -8.77 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.60 7.08 -51.93 -0.37 0.23 16 31 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.16 2.85 5.43 -52.49 -0.28 2.57 16 35 H 0.41 5.70 7.78 -40.82 -0.32 5.38 16 36 H 0.10 1.90 7.13 -51.93 -0.37 1.53 16 37 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 38 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 40 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.10 2.33 4.18 -52.49 -0.22 2.12 16 42 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 43 H 0.41 3.65 8.81 -40.82 -0.36 3.29 16 44 H 0.40 3.32 8.93 -40.82 -0.36 2.96 16 LS Contribution 366.52 15.07 5.52 5.52 Total: -1.00 -31.72 366.52 -8.37 -40.10 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -5.22 Total: 16.36 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -5.70 Total: -19.65 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.99 Total: -39.24 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.17 Total: -19.47 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.14 Total: 16.38 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.72 -8.37 -40.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776829326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.288 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds