Wall clock time and date at job start Tue Mar 31 2020 21:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37837 * 120.04048 * 2 1 4 4 C 1.38514 * 120.33393 * 180.02562 * 3 2 1 5 5 C 1.38071 * 120.40588 * 0.22774 * 4 3 2 6 6 C 1.38813 * 120.06282 * 359.49284 * 5 4 3 7 7 N 1.39288 * 120.16357 * 180.27136 * 6 5 4 8 8 C 1.34781 * 120.00031 * 19.98029 * 7 6 5 9 9 O 1.21278 * 119.99573 * 5.40274 * 8 7 6 10 10 C 1.50692 * 120.00449 * 185.39495 * 8 7 6 11 11 C 1.50699 * 109.47422 * 180.02562 * 10 8 7 12 12 C 1.37639 * 120.12419 * 264.99889 * 11 10 8 13 13 C 1.38620 * 120.24425 * 179.97438 * 12 11 10 14 14 C 1.38648 * 120.50468 * 0.02562 * 13 12 11 15 15 C 1.37603 * 120.24621 * 0.02562 * 14 13 12 16 16 C 1.40692 * 120.12923 * 84.72430 * 11 10 8 17 17 C 1.41404 * 120.24445 * 359.97438 * 16 11 10 18 18 H 1.07995 * 119.99935 * 330.65753 * 17 16 11 19 19 C 1.39945 * 119.99829 * 150.65896 * 17 16 11 20 20 N 1.30822 * 119.99528 * 167.82464 * 19 17 16 21 21 Si 1.86796 * 120.00234 * 347.82451 * 19 17 16 22 22 H 1.48493 * 109.47304 * 95.15221 * 21 19 17 23 23 H 1.48506 * 109.46846 * 215.15096 * 21 19 17 24 24 H 1.48503 * 109.47010 * 335.14713 * 21 19 17 25 25 C 1.39646 * 120.04084 * 179.97438 * 2 1 3 26 26 C 1.47525 * 120.19863 * 359.97438 * 25 2 1 27 27 N 1.34781 * 119.99971 * 270.00325 * 26 25 2 28 28 O 1.21589 * 119.99929 * 90.00126 * 26 25 2 29 29 H 1.08996 * 109.46943 * 90.00221 * 1 2 3 30 30 H 1.09001 * 109.47026 * 210.00174 * 1 2 3 31 31 H 1.09001 * 109.47297 * 329.99866 * 1 2 3 32 32 H 1.08000 * 119.83573 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.80418 * 179.97438 * 4 3 2 34 34 H 1.07997 * 119.96871 * 179.74734 * 5 4 3 35 35 H 0.96996 * 120.00503 * 199.98058 * 7 6 5 36 36 H 1.09004 * 109.47418 * 300.00681 * 10 8 7 37 37 H 1.09000 * 109.47156 * 60.00069 * 10 8 7 38 38 H 1.08004 * 119.87823 * 0.02562 * 12 11 10 39 39 H 1.08001 * 119.74599 * 179.97438 * 13 12 11 40 40 H 1.07995 * 119.88036 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.12391 * 179.97438 * 15 14 13 42 42 H 0.97003 * 119.99719 * 179.97438 * 20 19 17 43 43 H 0.96998 * 119.99781 * 359.97438 * 27 26 25 44 44 H 0.96998 * 119.99475 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1932 0.0000 4 6 3.5822 1.2003 -0.0005 5 6 4.2870 0.0131 -0.0058 6 6 3.6091 -1.1982 0.0000 7 7 4.3181 -2.3971 0.0004 8 6 5.6069 -2.4177 0.3943 9 8 6.1206 -1.4139 0.8407 10 6 6.4095 -3.6880 0.2803 11 6 7.8088 -3.4452 0.7844 12 6 8.8141 -3.1200 -0.0977 13 6 10.1020 -2.8956 0.3634 14 6 10.3930 -2.9961 1.7152 15 6 9.4039 -3.3209 2.6149 16 6 8.0913 -3.5443 2.1591 17 6 7.0651 -3.8714 3.0753 18 1 6.0431 -3.5947 2.8628 19 6 7.3740 -4.5538 4.2574 20 7 6.4824 -4.6483 5.2101 21 14 9.0592 -5.3298 4.4749 22 1 9.9459 -4.3905 5.2074 23 1 8.9273 -6.5909 5.2481 24 1 9.6439 -5.6252 3.1422 25 6 2.2061 -1.2089 0.0005 26 6 1.4738 -2.4895 0.0017 27 7 1.1397 -3.0737 1.1694 28 8 1.1717 -3.0180 -1.0508 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.6550 2.1274 -0.0004 33 1 4.1141 2.1402 -0.0009 34 1 5.3669 0.0269 -0.0103 35 1 3.8844 -3.2172 -0.2828 36 1 5.9393 -4.4698 0.8768 37 1 6.4481 -4.0010 -0.7631 38 1 8.5986 -3.0386 -1.1529 39 1 10.8848 -2.6414 -0.3359 40 1 11.4000 -2.8196 2.0634 41 1 9.6329 -3.3991 3.6675 42 1 6.6964 -5.1216 6.0294 43 1 1.3811 -2.6523 2.0091 44 1 0.6579 -3.9156 1.1701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776829326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:02 Heat of formation + Delta-G solvation = -52.654206 kcal Electronic energy + Delta-G solvation = -28743.533339 eV Core-core repulsion = 24817.075126 eV Total energy + Delta-G solvation = -3926.458213 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.06099 -40.74146 -39.61663 -38.93530 -36.08862 -35.48948 -34.77709 -33.84444 -33.20343 -32.21425 -31.17863 -28.73167 -27.90474 -26.73153 -24.91277 -23.76970 -23.19785 -21.75527 -21.67245 -20.87617 -19.28034 -19.16442 -18.45814 -17.95711 -17.87976 -17.49164 -16.82518 -16.57908 -16.13147 -16.07674 -15.60680 -15.47889 -15.19303 -14.90640 -14.83960 -14.64445 -14.51261 -14.26762 -13.90032 -13.76822 -13.40333 -13.24121 -13.16880 -12.84096 -12.73797 -12.69301 -12.53123 -12.45283 -11.97503 -11.59945 -11.51235 -11.40632 -11.26113 -10.97416 -10.80934 -10.68516 -9.80294 -9.40561 -9.31826 -9.08495 -8.85637 -6.46868 0.05184 0.30294 0.77042 0.89494 1.27308 1.34354 1.39917 1.48840 1.61512 1.98669 2.12731 2.45643 2.65683 2.73281 3.47699 3.71603 3.81388 3.87851 4.00827 4.16771 4.22349 4.32771 4.40987 4.41738 4.48725 4.52600 4.64614 4.68743 4.73644 4.82176 4.88739 4.93193 5.11924 5.14402 5.14839 5.35378 5.36281 5.48392 5.54233 5.64452 5.73290 5.84826 5.92245 5.97859 6.03849 6.21080 6.26802 6.29386 6.44158 6.77763 6.89103 7.07069 7.13180 8.21579 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.003474 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.816227 B = 8058.012841 C = 8947.646943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.033 4.033 3 C -0.143 4.143 4 C -0.075 4.075 5 C -0.175 4.175 6 C 0.180 3.820 7 N -0.668 5.668 8 C 0.520 3.480 9 O -0.531 6.531 10 C -0.074 4.074 11 C -0.174 4.174 12 C -0.076 4.076 13 C -0.228 4.228 14 C -0.089 4.089 15 C -0.256 4.256 16 C 0.085 3.915 17 C -0.464 4.464 18 H 0.059 0.941 19 C 0.047 3.953 20 N -0.853 5.853 21 Si 0.963 3.037 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.245 1.245 25 C -0.190 4.190 26 C 0.578 3.422 27 N -0.827 5.827 28 O -0.573 6.573 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.162 0.838 33 H 0.150 0.850 34 H 0.136 0.864 35 H 0.416 0.584 36 H 0.100 0.900 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.291 0.709 43 H 0.414 0.586 44 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.784 5.969 -8.338 14.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.034 4.034 3 C -0.161 4.161 4 C -0.093 4.093 5 C -0.195 4.195 6 C 0.083 3.917 7 N -0.311 5.311 8 C 0.310 3.690 9 O -0.406 6.406 10 C -0.113 4.113 11 C -0.175 4.175 12 C -0.094 4.094 13 C -0.247 4.247 14 C -0.107 4.107 15 C -0.275 4.275 16 C 0.083 3.917 17 C -0.494 4.494 18 H 0.077 0.923 19 C -0.167 4.167 20 N -0.480 5.480 21 Si 0.789 3.211 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.169 1.169 25 C -0.196 4.196 26 C 0.362 3.638 27 N -0.390 5.390 28 O -0.453 6.453 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.180 0.820 33 H 0.168 0.832 34 H 0.154 0.846 35 H 0.252 0.748 36 H 0.118 0.882 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.244 0.756 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -9.598 6.319 -8.510 14.299 hybrid contribution 0.350 -0.971 1.044 1.468 sum -9.249 5.348 -7.466 13.034 Atomic orbital electron populations 1.20918 0.88681 1.04148 1.03496 1.20001 0.97183 0.90712 0.95535 1.21254 0.93731 0.98268 1.02877 1.21501 0.94769 0.97845 0.95219 1.21643 1.02006 0.91434 1.04419 1.17913 0.89673 0.86745 0.97410 1.43546 1.12324 1.09871 1.65347 1.21416 0.80993 0.91531 0.75089 1.90597 1.70764 1.36442 1.42799 1.20369 0.92793 0.94193 1.03937 1.19393 0.94214 1.11298 0.92625 1.20894 0.92957 0.96844 0.98687 1.20860 0.97071 1.11713 0.95092 1.20964 0.98062 0.97729 0.93983 1.21082 0.95332 1.13065 0.97976 1.17706 0.92026 0.89489 0.92509 1.19360 0.95302 1.33041 1.01701 0.92256 1.26746 1.01625 0.94647 0.93692 1.69686 1.37720 1.34813 1.05780 0.85530 0.78510 0.77238 0.79804 1.19694 1.21109 1.16884 1.19445 0.91265 0.94597 1.14306 1.18145 0.77621 0.84031 0.84016 1.43812 1.59565 1.27396 1.08205 1.90832 1.56128 1.65768 1.32575 0.90154 0.91916 0.88180 0.82012 0.83223 0.84649 0.74753 0.88217 0.85895 0.85608 0.85396 0.86078 0.89257 0.89918 0.75583 0.75353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 9.62 71.24 0.69 -1.17 16 2 C -0.03 -0.74 5.91 -19.62 -0.12 -0.85 16 3 C -0.14 -2.87 9.68 22.24 0.22 -2.66 16 4 C -0.07 -1.82 10.03 22.30 0.22 -1.60 16 5 C -0.17 -5.60 8.77 22.37 0.20 -5.41 16 6 C 0.18 5.72 6.51 38.60 0.25 5.97 16 7 N -0.67 -21.58 5.22 -302.95 -1.58 -23.16 16 8 C 0.52 19.96 7.27 87.65 0.64 20.60 16 9 O -0.53 -24.32 12.93 -3.02 -0.04 -24.36 16 10 C -0.07 -2.69 5.19 29.10 0.15 -2.54 16 11 C -0.17 -7.60 4.43 -19.41 -0.09 -7.68 16 12 C -0.08 -2.96 9.66 22.22 0.21 -2.75 16 13 C -0.23 -8.79 10.05 22.46 0.23 -8.56 16 14 C -0.09 -3.74 10.02 22.22 0.22 -3.51 16 15 C -0.26 -12.37 6.88 22.73 0.16 -12.21 16 16 C 0.09 4.29 5.19 -21.29 -0.11 4.18 16 17 C -0.46 -25.28 8.63 23.46 0.20 -25.08 16 18 H 0.06 3.45 6.95 -2.91 -0.02 3.43 16 19 C 0.05 2.47 5.48 85.26 0.47 2.94 16 20 N -0.85 -46.23 13.93 21.83 0.30 -45.92 16 21 Si 0.96 43.18 24.36 68.60 1.67 44.85 16 22 H -0.27 -11.85 6.78 99.48 0.67 -11.17 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.25 -11.06 6.42 99.48 0.64 -10.42 16 25 C -0.19 -5.20 5.64 -19.99 -0.11 -5.31 16 26 C 0.58 15.22 4.84 86.69 0.42 15.64 16 27 N -0.83 -16.06 8.87 -175.82 -1.56 -17.62 16 28 O -0.57 -18.69 17.94 -4.00 -0.07 -18.76 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.03 7.08 -2.39 -0.02 1.01 16 31 H 0.10 1.08 8.09 -2.39 -0.02 1.06 16 32 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.14 5.06 5.43 -2.91 -0.02 5.04 16 35 H 0.42 11.85 7.78 -92.71 -0.72 11.13 16 36 H 0.10 3.75 7.13 -2.38 -0.02 3.73 16 37 H 0.12 3.47 8.05 -2.39 -0.02 3.45 16 38 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 39 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 40 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 41 H 0.09 4.36 4.18 -2.91 -0.01 4.35 16 42 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 43 H 0.41 7.22 8.81 -92.71 -0.82 6.40 16 44 H 0.41 6.51 8.93 -92.71 -0.83 5.68 16 Total: -1.00 -71.86 366.52 1.20 -70.66 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: -1.37 Total: 44.32 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 3.84 Total: -30.00 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -2.84 Total: -86.70 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -0.11 Total: -43.13 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.67 Total: 44.85 kcal Total: -71.86 1.20 -70.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776829326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.006 kcal (2) G-P(sol) polarization free energy of solvation -71.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds