Wall clock time and date at job start Tue Mar 31 2020 20:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86804 * 119.99736 * 2 1 4 4 H 1.48498 * 109.47200 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47249 * 120.00084 * 3 2 1 6 6 H 1.48505 * 109.46864 * 239.99650 * 3 2 1 7 7 C 1.39942 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99882 * 154.85868 * 7 2 1 9 9 C 1.41396 * 119.99761 * 334.85571 * 7 2 1 10 10 C 1.40731 * 120.24575 * 334.83993 * 9 7 2 11 11 C 1.37602 * 119.74560 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24599 * 0.02653 * 11 10 9 13 13 C 1.38607 * 120.50159 * 359.97438 * 12 11 10 14 14 C 1.37644 * 120.25109 * 359.67411 * 13 12 11 15 15 C 1.50697 * 120.12986 * 180.32103 * 14 13 12 16 16 C 1.50694 * 109.47098 * 265.30541 * 15 14 13 17 17 O 1.21276 * 120.00095 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00044 * 180.02562 * 16 15 14 19 19 C 1.46503 * 119.99897 * 179.97438 * 18 16 15 20 20 C 1.50706 * 109.46525 * 180.02562 * 19 18 16 21 21 O 1.21281 * 120.00178 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99540 * 180.02562 * 20 19 18 23 23 C 1.39922 * 120.00289 * 175.51611 * 22 20 19 24 24 C 1.38872 * 120.07623 * 214.84298 * 23 22 20 25 25 C 1.38114 * 119.92819 * 179.74533 * 24 23 22 26 26 C 1.38277 * 120.07169 * 0.52739 * 25 24 23 27 27 C 1.38278 * 120.14261 * 359.74895 * 26 25 24 28 28 C 1.38119 * 120.06994 * 359.97438 * 27 26 25 29 29 H 0.96996 * 120.00396 * 174.70188 * 1 2 3 30 30 H 1.07998 * 120.13138 * 359.97438 * 10 9 7 31 31 H 1.08004 * 119.87298 * 179.97438 * 11 10 9 32 32 H 1.08007 * 119.74462 * 179.97438 * 12 11 10 33 33 H 1.08008 * 119.87466 * 179.97438 * 13 12 11 34 34 H 1.08999 * 109.46828 * 25.30972 * 15 14 13 35 35 H 1.09003 * 109.47171 * 145.29966 * 15 14 13 36 36 H 0.97003 * 119.99845 * 359.97438 * 18 16 15 37 37 H 1.08997 * 109.47304 * 299.99811 * 19 18 16 38 38 H 1.09000 * 109.47102 * 60.00584 * 19 18 16 39 39 H 0.97000 * 120.00202 * 355.52034 * 22 20 19 40 40 H 1.08001 * 120.02989 * 0.02562 * 24 23 22 41 41 H 1.08008 * 119.96033 * 180.27493 * 25 24 23 42 42 H 1.07997 * 119.92812 * 179.71821 * 26 25 24 43 43 H 1.08001 * 119.96502 * 179.97438 * 27 26 25 44 44 H 1.07995 * 120.03468 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2772 2.7465 -0.0006 5 1 3.0959 1.6965 1.2124 6 1 3.0960 1.6964 -1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0112 -1.2564 -0.3968 9 6 1.4014 -2.3782 0.5214 10 6 0.3798 -2.2765 1.4838 11 6 -0.2030 -3.4182 1.9841 12 6 0.2132 -4.6653 1.5438 13 6 1.2186 -4.7774 0.5963 14 6 1.8107 -3.6487 0.0767 15 6 2.8986 -3.7736 -0.9587 16 6 4.2439 -3.7371 -0.2807 17 8 4.3126 -3.6216 0.9246 18 7 5.3708 -3.8328 -1.0138 19 6 6.6787 -3.7968 -0.3548 20 6 7.7665 -3.9205 -1.3904 21 8 7.4777 -4.0287 -2.5633 22 7 9.0603 -3.9121 -1.0129 23 6 10.0674 -4.1208 -1.9616 24 6 11.2219 -4.8084 -1.6113 25 6 12.2117 -5.0173 -2.5516 26 6 12.0588 -4.5332 -3.8378 27 6 10.9129 -3.8432 -4.1883 28 6 9.9168 -3.6359 -3.2542 29 1 -0.4850 -0.8364 -0.0776 30 1 0.0549 -1.3061 1.8291 31 1 -0.9870 -3.3425 2.7231 32 1 -0.2495 -5.5562 1.9423 33 1 1.5353 -5.7540 0.2608 34 1 2.7858 -4.7175 -1.4920 35 1 2.8249 -2.9464 -1.6647 36 1 5.3158 -3.9256 -1.9779 37 1 6.7909 -2.8529 0.1786 38 1 6.7528 -4.6241 0.3511 39 1 9.2934 -3.7613 -0.0835 40 1 11.3436 -5.1833 -0.6057 41 1 13.1079 -5.5559 -2.2808 42 1 12.8362 -4.6940 -4.5700 43 1 10.7966 -3.4660 -5.1936 44 1 9.0219 -3.0973 -3.5287 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776836828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:44 Heat of formation + Delta-G solvation = -31.092210 kcal Electronic energy + Delta-G solvation = -27406.114089 eV Core-core repulsion = 23480.590875 eV Total energy + Delta-G solvation = -3925.523214 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.94719 -39.37780 -38.60953 -37.46879 -35.19280 -34.15792 -33.82383 -31.85701 -31.21647 -30.34428 -29.18318 -28.14881 -26.19548 -24.81604 -23.30016 -22.69492 -20.92445 -20.86783 -20.59883 -19.63663 -18.36521 -17.75432 -17.35920 -16.65006 -16.15301 -16.01009 -15.73755 -15.09882 -14.85539 -14.65631 -14.45104 -14.12232 -14.00589 -13.75599 -13.68163 -13.57568 -13.13923 -12.93211 -12.56359 -12.27154 -12.06100 -11.98644 -11.71951 -11.59844 -11.20809 -11.11703 -10.83173 -10.74026 -10.44855 -10.37087 -10.18267 -9.62808 -9.36350 -9.32083 -9.23617 -8.94396 -8.89971 -8.50229 -7.53392 -7.47817 -7.09825 -4.39606 0.92834 1.09792 2.18465 2.48135 2.80490 2.88401 3.17192 3.23654 3.30891 3.38589 3.50691 3.62305 4.04338 4.24799 4.59572 4.62103 4.64522 4.85527 5.09103 5.15387 5.19455 5.22459 5.26830 5.44819 5.70101 5.72176 5.94058 5.96805 6.00107 6.06586 6.16652 6.20315 6.25320 6.36188 6.38802 6.54184 6.71127 6.71703 6.95593 7.03010 7.23675 7.44654 7.66357 7.69565 7.84881 7.86456 7.89543 7.98437 8.23690 8.37582 8.74038 8.81717 8.95451 10.09974 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.014837 B = 0.002404 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.679855 B =11644.653580 C =12927.064542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.040 3.960 3 Si 1.061 2.939 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.072 0.928 9 C 0.116 3.884 10 C -0.217 4.217 11 C -0.086 4.086 12 C -0.254 4.254 13 C -0.068 4.068 14 C -0.186 4.186 15 C -0.068 4.068 16 C 0.519 3.481 17 O -0.521 6.521 18 N -0.735 5.735 19 C 0.104 3.896 20 C 0.513 3.487 21 O -0.515 6.515 22 N -0.673 5.673 23 C 0.145 3.855 24 C -0.145 4.145 25 C -0.103 4.103 26 C -0.137 4.137 27 C -0.102 4.102 28 C -0.121 4.121 29 H 0.300 0.700 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.408 0.592 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.415 0.585 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.043 -6.396 -5.549 22.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.182 4.182 3 Si 0.884 3.116 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.090 0.910 9 C 0.113 3.887 10 C -0.236 4.236 11 C -0.104 4.104 12 C -0.273 4.273 13 C -0.086 4.086 14 C -0.188 4.188 15 C -0.107 4.107 16 C 0.307 3.693 17 O -0.395 6.395 18 N -0.393 5.393 19 C -0.023 4.023 20 C 0.300 3.700 21 O -0.389 6.389 22 N -0.318 5.318 23 C 0.051 3.949 24 C -0.166 4.166 25 C -0.122 4.122 26 C -0.155 4.155 27 C -0.121 4.121 28 C -0.141 4.141 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.245 0.755 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.251 0.749 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 20.527 -4.734 -5.415 21.751 hybrid contribution 0.420 -1.761 0.116 1.814 sum 20.947 -6.495 -5.300 22.562 Atomic orbital electron populations 1.70451 1.08189 1.34299 1.29268 1.26931 0.95691 1.04170 0.91416 0.83705 0.75749 0.74149 0.77951 1.19882 1.20066 1.20229 1.20442 1.02590 0.93974 1.37377 0.90988 1.17395 0.90246 0.91802 0.89244 1.21140 1.03460 0.96978 1.02012 1.20606 0.98248 0.93242 0.98319 1.20262 1.04804 0.95806 1.06441 1.20362 0.96061 0.95809 0.96401 1.19002 1.02615 0.93569 1.03586 1.20225 0.89371 1.02791 0.98358 1.21281 0.85523 0.74686 0.87830 1.90684 1.87212 1.47005 1.14560 1.45925 1.03757 1.77919 1.11744 1.20929 0.82745 1.04852 0.93818 1.20936 0.83418 0.75193 0.90413 1.90700 1.82297 1.47308 1.18616 1.43432 1.04932 1.71586 1.11887 1.17780 0.89011 0.97847 0.90287 1.20927 0.94420 1.00544 1.00674 1.20946 0.98556 0.99529 0.93163 1.21167 0.98123 0.99634 0.96603 1.21110 0.93258 0.98309 0.99414 1.21358 1.00177 1.00108 0.92411 0.88673 0.87731 0.89395 0.89458 0.89578 0.90377 0.88423 0.75496 0.88217 0.88383 0.74886 0.85629 0.85679 0.85988 0.85649 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.23 12.32 55.55 0.68 -20.54 16 2 C 0.04 1.01 4.95 -17.34 -0.09 0.93 16 3 Si 1.06 21.98 30.00 -169.99 -5.10 16.88 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.52 -13.57 8.09 -37.74 -0.31 -13.88 16 8 H 0.07 1.86 6.72 -52.49 -0.35 1.51 16 9 C 0.12 3.08 5.31 -106.83 -0.57 2.51 16 10 C -0.22 -5.71 7.93 -38.87 -0.31 -6.02 16 11 C -0.09 -2.06 10.02 -39.66 -0.40 -2.46 16 12 C -0.25 -5.86 10.05 -39.29 -0.39 -6.26 16 13 C -0.07 -1.56 9.66 -39.66 -0.38 -1.94 16 14 C -0.19 -4.47 4.43 -103.91 -0.46 -4.93 16 15 C -0.07 -1.34 5.18 -29.04 -0.15 -1.49 16 16 C 0.52 10.03 7.46 -10.99 -0.08 9.95 16 17 O -0.52 -12.10 16.03 5.56 0.09 -12.01 16 18 N -0.73 -11.02 5.53 -61.47 -0.34 -11.36 16 19 C 0.10 1.25 6.16 -5.19 -0.03 1.22 16 20 C 0.51 5.77 7.74 -10.98 -0.09 5.69 16 21 O -0.51 -7.24 13.11 5.56 0.07 -7.16 16 22 N -0.67 -5.82 5.34 -9.86 -0.05 -5.87 16 23 C 0.14 1.41 6.30 -83.69 -0.53 0.88 16 24 C -0.15 -1.15 9.97 -39.39 -0.39 -1.54 16 25 C -0.10 -0.75 10.04 -39.61 -0.40 -1.15 16 26 C -0.14 -1.04 10.04 -39.55 -0.40 -1.44 16 27 C -0.10 -0.91 10.04 -39.61 -0.40 -1.31 16 28 C -0.12 -1.29 8.70 -39.39 -0.34 -1.63 16 29 H 0.30 8.16 6.62 -40.82 -0.27 7.89 16 30 H 0.10 2.83 6.45 -52.49 -0.34 2.49 16 31 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 32 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 33 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 34 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 35 H 0.10 1.93 7.06 -51.93 -0.37 1.56 16 36 H 0.41 5.65 7.44 -40.82 -0.30 5.35 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.41 2.26 8.82 -40.82 -0.36 1.90 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.14 1.69 6.23 -52.49 -0.33 1.37 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -33.02 375.79 -10.03 -43.05 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -5.34 Total: 14.22 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -5.71 Total: -22.87 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.29 Total: -37.77 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.16 Total: -19.17 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.10 Total: 16.88 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.02 -10.03 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776836828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.957 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds