Wall clock time and date at job start Tue Mar 31 2020 21:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38026 * 119.99874 * 2 1 4 4 C 1.38213 * 120.21823 * 179.71679 * 3 2 1 5 5 C 1.38986 * 120.22228 * 0.52537 * 4 3 2 6 6 N 1.39957 * 119.99891 * 179.75925 * 5 4 3 7 7 C 1.34784 * 119.99791 * 324.70734 * 6 5 4 8 8 O 1.21281 * 120.00120 * 354.76524 * 7 6 5 9 9 C 1.50700 * 119.99770 * 175.03059 * 7 6 5 10 10 C 1.50697 * 109.46858 * 180.02562 * 9 7 6 11 11 C 1.37633 * 120.12907 * 264.99858 * 10 9 7 12 12 C 1.38613 * 120.25017 * 179.97438 * 11 10 9 13 13 C 1.38664 * 120.50136 * 0.02562 * 12 11 10 14 14 C 1.37602 * 120.24455 * 0.02562 * 13 12 11 15 15 C 1.40699 * 120.12583 * 84.73137 * 10 9 7 16 16 C 1.41397 * 120.24362 * 359.97438 * 15 10 9 17 17 H 1.07999 * 119.99735 * 329.34932 * 16 15 10 18 18 C 1.39947 * 119.99632 * 149.34925 * 16 15 10 19 19 N 1.30823 * 119.99437 * 164.85702 * 18 16 15 20 20 Si 1.86800 * 120.00231 * 344.85124 * 18 16 15 21 21 H 1.48503 * 109.46835 * 90.72635 * 20 18 16 22 22 H 1.48494 * 109.47124 * 210.72225 * 20 18 16 23 23 H 1.48491 * 109.47190 * 330.72687 * 20 18 16 24 24 C 1.38596 * 120.00568 * 359.48011 * 5 4 3 25 25 C 1.39495 * 119.77417 * 0.25712 * 24 5 4 26 26 C 1.47859 * 120.11262 * 180.02562 * 25 24 5 27 27 N 1.34784 * 119.99664 * 353.81193 * 26 25 24 28 28 O 1.21549 * 120.00413 * 173.81032 * 26 25 24 29 29 H 1.08999 * 109.46824 * 262.86672 * 1 2 3 30 30 H 1.09002 * 109.47057 * 22.86458 * 1 2 3 31 31 H 1.08995 * 109.47203 * 142.86897 * 1 2 3 32 32 H 1.07998 * 119.89085 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.88825 * 180.28089 * 4 3 2 34 34 H 0.96996 * 120.00535 * 144.71215 * 6 5 4 35 35 H 1.08993 * 109.47417 * 300.00514 * 9 7 6 36 36 H 1.09002 * 109.46617 * 60.00514 * 9 7 6 37 37 H 1.08000 * 119.87634 * 0.02562 * 11 10 9 38 38 H 1.08005 * 119.75204 * 180.02562 * 12 11 10 39 39 H 1.07998 * 119.87613 * 179.97438 * 13 12 11 40 40 H 1.07994 * 120.12247 * 179.97438 * 14 13 12 41 41 H 0.97012 * 119.99697 * 179.97438 * 19 18 16 42 42 H 1.07995 * 120.11379 * 180.23271 * 24 5 4 43 43 H 0.96998 * 119.99869 * 359.97438 * 27 26 25 44 44 H 0.97004 * 120.00109 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1954 0.0000 4 6 3.5793 1.2007 0.0059 5 6 4.2835 0.0024 0.0009 6 7 5.6830 0.0133 0.0018 7 6 6.3499 0.9743 -0.6678 8 8 5.7415 1.7728 -1.3483 9 6 7.8520 1.0529 -0.5757 10 6 8.3468 2.2064 -1.4096 11 6 8.7664 1.9938 -2.7031 12 6 9.2214 3.0531 -3.4726 13 6 9.2600 4.3370 -2.9502 14 6 8.8464 4.5727 -1.6591 15 6 8.3762 3.5058 -0.8709 16 6 7.9417 3.7372 0.4547 17 1 7.1689 3.1179 0.8855 18 6 8.5132 4.7687 1.2083 19 7 7.9284 5.1794 2.3041 20 14 10.1110 5.5590 0.6495 21 1 9.8092 6.7211 -0.2243 22 1 10.8777 6.0175 1.8357 23 1 10.9159 4.5666 -0.1069 24 6 3.5999 -1.2032 0.0008 25 6 2.2050 -1.2087 0.0003 26 6 1.4682 -2.4906 0.0008 27 7 2.1386 -3.6532 -0.1242 28 8 0.2580 -2.4961 0.1139 29 1 -0.3633 -0.1276 1.0197 30 1 -0.3633 0.9469 -0.3993 31 1 -0.3633 -0.8193 -0.6203 32 1 1.6554 2.1296 0.0004 33 1 4.1138 2.1391 0.0105 34 1 6.1731 -0.6708 0.4842 35 1 8.1449 1.2041 0.4632 36 1 8.2876 0.1242 -0.9445 37 1 8.7403 0.9980 -3.1204 38 1 9.5484 2.8773 -4.4868 39 1 9.6168 5.1549 -3.5586 40 1 8.8776 5.5733 -1.2541 41 1 8.3247 5.8942 2.8267 42 1 4.1454 -2.1353 0.0007 43 1 3.1043 -3.6488 -0.2148 44 1 1.6552 -4.4942 -0.1242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776885077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:07 Heat of formation + Delta-G solvation = -30.468573 kcal Electronic energy + Delta-G solvation = -28133.576073 eV Core-core repulsion = 24208.079902 eV Total energy + Delta-G solvation = -3925.496171 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.66538 -39.68481 -38.23134 -37.43613 -34.80924 -34.12393 -33.62265 -32.17913 -31.10154 -30.96896 -30.37124 -27.56983 -26.12692 -24.83209 -24.04149 -21.92177 -21.66462 -21.31746 -20.11707 -19.49123 -18.25233 -17.39740 -17.09157 -16.84584 -16.06291 -15.79197 -15.56442 -15.29237 -14.97504 -14.59038 -14.44811 -14.11763 -13.83704 -13.63547 -13.57998 -13.38700 -13.24432 -12.73603 -12.28550 -12.22086 -12.03222 -11.93688 -11.85928 -11.47899 -11.44226 -11.24576 -10.82210 -10.77600 -10.30598 -10.11532 -9.93981 -9.83810 -9.73788 -9.62527 -9.39866 -9.13452 -8.97465 -7.95048 -7.65409 -7.55848 -6.96070 -4.53191 0.82953 1.26586 2.49275 2.66973 2.73640 3.09856 3.11119 3.16540 3.25588 3.28980 3.41148 3.83837 3.95230 4.48529 4.63611 4.65463 4.94924 5.13270 5.23431 5.32366 5.44731 5.56004 5.66432 5.75033 5.80529 5.82020 5.87462 6.01984 6.03078 6.13581 6.20367 6.28184 6.36564 6.46868 6.53062 6.56873 6.62122 6.67254 6.90804 7.01292 7.11372 7.16360 7.36995 7.59220 7.63448 7.71330 7.85297 8.04779 8.09187 8.30667 8.55704 8.62719 8.78132 10.05978 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.002798 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.883992 B =10004.055414 C =10704.752511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.043 4.043 3 C -0.110 4.110 4 C -0.083 4.083 5 C 0.148 3.852 6 N -0.687 5.687 7 C 0.515 3.485 8 O -0.498 6.498 9 C -0.072 4.072 10 C -0.171 4.171 11 C -0.067 4.067 12 C -0.242 4.242 13 C -0.078 4.078 14 C -0.237 4.237 15 C 0.110 3.890 16 C -0.444 4.444 17 H 0.088 0.912 18 C 0.084 3.916 19 N -0.810 5.810 20 Si 0.914 3.086 21 H -0.270 1.270 22 H -0.294 1.294 23 H -0.245 1.245 24 C -0.117 4.117 25 C -0.134 4.134 26 C 0.567 3.433 27 N -0.854 5.854 28 O -0.537 6.537 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.144 0.856 34 H 0.408 0.592 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.285 0.715 42 H 0.126 0.874 43 H 0.400 0.600 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.207 -13.933 -1.227 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.045 4.045 3 C -0.129 4.129 4 C -0.103 4.103 5 C 0.053 3.947 6 N -0.334 5.334 7 C 0.304 3.696 8 O -0.370 6.370 9 C -0.111 4.111 10 C -0.173 4.173 11 C -0.085 4.085 12 C -0.261 4.261 13 C -0.096 4.096 14 C -0.256 4.256 15 C 0.107 3.893 16 C -0.473 4.473 17 H 0.106 0.894 18 C -0.135 4.135 19 N -0.435 5.435 20 Si 0.741 3.259 21 H -0.197 1.197 22 H -0.221 1.221 23 H -0.169 1.169 24 C -0.138 4.138 25 C -0.138 4.138 26 C 0.355 3.645 27 N -0.418 5.418 28 O -0.415 6.415 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.150 0.850 33 H 0.162 0.838 34 H 0.243 0.757 35 H 0.123 0.877 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.144 0.856 43 H 0.230 0.770 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.382 -12.980 -1.392 14.531 hybrid contribution 1.317 -0.163 0.084 1.330 sum -5.065 -13.144 -1.308 14.147 Atomic orbital electron populations 1.21016 0.90166 1.02738 1.03293 1.19973 0.96718 0.91420 0.96344 1.20991 0.93598 0.97636 1.00633 1.21543 0.94141 0.98550 0.96066 1.17608 0.83626 0.93372 1.00070 1.43829 1.03833 1.32184 1.53551 1.21433 0.91181 0.79307 0.77697 1.90717 1.69708 1.38792 1.37748 1.20301 0.89091 0.98503 1.03238 1.19015 1.10332 0.92837 0.95093 1.20436 0.97752 0.96967 0.93371 1.20350 1.13058 0.93379 0.99295 1.20618 0.98117 0.95772 0.95132 1.21084 1.11272 0.98052 0.95152 1.17489 0.88550 0.90110 0.93124 1.19400 1.18737 1.12946 0.96213 0.89385 1.26153 0.98856 0.94326 0.94155 1.69680 1.37083 1.22967 1.13730 0.86324 0.81727 0.80435 0.77416 1.19680 1.22142 1.16878 1.20897 0.92980 0.96768 1.03176 1.19349 0.92662 0.92956 1.08801 1.18272 0.86865 0.84153 0.75230 1.43787 1.11905 1.08499 1.77576 1.90762 1.13813 1.87273 1.49634 0.90960 0.92449 0.89156 0.84957 0.83800 0.75697 0.87681 0.89956 0.89056 0.88944 0.88945 0.88059 0.90503 0.85622 0.77015 0.76643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 8.70 36.01 0.31 -1.08 16 2 C -0.04 -0.57 5.92 -104.20 -0.62 -1.18 16 3 C -0.11 -1.53 9.65 -39.67 -0.38 -1.91 16 4 C -0.08 -1.32 8.65 -39.31 -0.34 -1.66 16 5 C 0.15 2.08 6.23 -83.74 -0.52 1.56 16 6 N -0.69 -9.29 5.33 -9.89 -0.05 -9.34 16 7 C 0.52 9.16 7.14 -10.98 -0.08 9.08 16 8 O -0.50 -11.03 13.85 5.56 0.08 -10.95 16 9 C -0.07 -1.24 5.20 -29.04 -0.15 -1.39 16 10 C -0.17 -3.72 4.43 -103.92 -0.46 -4.18 16 11 C -0.07 -1.38 9.66 -39.66 -0.38 -1.76 16 12 C -0.24 -5.03 10.05 -39.29 -0.39 -5.42 16 13 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 14 C -0.24 -5.73 7.17 -38.87 -0.28 -6.00 16 15 C 0.11 2.71 5.12 -106.82 -0.55 2.16 16 16 C -0.44 -11.46 8.57 -37.74 -0.32 -11.78 16 17 H 0.09 2.37 7.00 -52.49 -0.37 2.00 16 18 C 0.08 2.13 5.44 -17.34 -0.09 2.03 16 19 N -0.81 -21.06 13.93 55.55 0.77 -20.29 16 20 Si 0.91 20.46 24.47 -169.99 -4.16 16.30 16 21 H -0.27 -5.99 6.52 56.52 0.37 -5.62 16 22 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.25 -5.57 6.92 56.52 0.39 -5.18 16 24 C -0.12 -1.31 9.44 -38.98 -0.37 -1.68 16 25 C -0.13 -1.65 5.87 -104.99 -0.62 -2.27 16 26 C 0.57 6.55 7.97 -12.32 -0.10 6.45 16 27 N -0.85 -6.13 8.82 30.53 0.27 -5.86 16 28 O -0.54 -7.69 14.18 5.32 0.08 -7.61 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.60 8.03 -51.93 -0.42 0.18 16 31 H 0.09 1.18 5.89 -51.93 -0.31 0.87 16 32 H 0.13 1.61 8.05 -52.49 -0.42 1.19 16 33 H 0.14 2.70 6.55 -52.49 -0.34 2.35 16 34 H 0.41 3.88 8.82 -40.82 -0.36 3.52 16 35 H 0.11 1.81 7.15 -51.93 -0.37 1.44 16 36 H 0.08 1.11 8.05 -51.93 -0.42 0.69 16 37 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16 38 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 39 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.10 2.46 4.45 -52.49 -0.23 2.22 16 41 H 0.28 6.75 8.30 -40.81 -0.34 6.41 16 42 H 0.13 0.93 6.45 -52.49 -0.34 0.59 16 43 H 0.40 1.93 6.90 -40.82 -0.28 1.65 16 44 H 0.40 2.25 8.93 -40.82 -0.36 1.89 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -32.54 363.26 -8.38 -40.91 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -5.09 Total: 12.49 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -5.74 Total: -21.13 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.99 Total: -35.49 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.15 Total: -18.56 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.16 Total: 16.30 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.54 -8.38 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776885077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.443 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds