Wall clock time and date at job start Tue Mar 31 2020 21:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37694 * 120.03905 * 2 1 4 4 C 1.39110 * 120.07099 * 180.23266 * 3 2 1 5 5 N 1.39438 * 119.92016 * 179.75960 * 4 3 2 6 6 C 1.34771 * 120.00679 * 324.49153 * 5 4 3 7 7 O 1.21278 * 119.99768 * 353.91183 * 6 5 4 8 8 C 1.50700 * 120.00407 * 173.91297 * 6 5 4 9 9 C 1.50700 * 109.47183 * 180.02562 * 8 6 5 10 10 C 1.37638 * 120.12540 * 265.29887 * 9 8 6 11 11 C 1.38617 * 120.24644 * 180.31995 * 10 9 8 12 12 C 1.38661 * 120.50039 * 359.67653 * 11 10 9 13 13 C 1.37595 * 120.24690 * 0.02562 * 12 11 10 14 14 C 1.40698 * 120.12920 * 85.00064 * 9 8 6 15 15 C 1.41392 * 120.24269 * 359.97322 * 14 9 8 16 16 H 1.08008 * 119.99968 * 26.40174 * 15 14 9 17 17 C 1.39948 * 120.00220 * 206.39600 * 15 14 9 18 18 N 1.30824 * 120.00093 * 198.88852 * 17 15 14 19 19 Si 1.86798 * 119.99718 * 18.89167 * 17 15 14 20 20 H 1.48500 * 109.47016 * 269.99946 * 19 17 15 21 21 H 1.48503 * 109.47358 * 29.99789 * 19 17 15 22 22 H 1.48498 * 109.47162 * 149.99590 * 19 17 15 23 23 C 1.39147 * 120.14956 * 359.48813 * 4 3 2 24 24 C 1.37653 * 120.07469 * 0.23376 * 23 4 3 25 25 C 1.39734 * 120.03431 * 179.69855 * 2 1 3 26 26 C 1.47591 * 120.07574 * 0.04166 * 25 2 1 27 27 N 1.34769 * 120.00106 * 173.39830 * 26 25 2 28 28 O 1.21595 * 119.99814 * 353.40012 * 26 25 2 29 29 H 1.09001 * 109.47231 * 263.90687 * 1 2 3 30 30 H 1.08997 * 109.46975 * 23.90228 * 1 2 3 31 31 H 1.08997 * 109.47172 * 143.90459 * 1 2 3 32 32 H 1.07993 * 119.96090 * 359.97438 * 3 2 1 33 33 H 0.97004 * 119.99603 * 144.49008 * 5 4 3 34 34 H 1.08996 * 109.47199 * 59.99835 * 8 6 5 35 35 H 1.09004 * 109.46881 * 299.99872 * 8 6 5 36 36 H 1.08002 * 119.87883 * 0.02562 * 10 9 8 37 37 H 1.07998 * 119.75006 * 179.69583 * 11 10 9 38 38 H 1.07998 * 119.87386 * 180.02562 * 12 11 10 39 39 H 1.08000 * 120.12488 * 180.02562 * 13 12 11 40 40 H 0.96995 * 119.99755 * 354.92508 * 18 17 15 41 41 H 1.08005 * 119.96660 * 180.25016 * 23 4 3 42 42 H 1.07998 * 120.03902 * 180.02562 * 24 23 4 43 43 H 0.97003 * 120.00401 * 0.02562 * 27 26 25 44 44 H 0.97002 * 120.00380 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1920 0.0000 4 6 3.5874 1.1928 -0.0049 5 7 4.2822 2.4017 -0.0099 6 6 3.7920 3.4580 -0.6884 7 8 2.8069 3.3279 -1.3837 8 6 4.4679 4.8008 -0.5831 9 6 3.7281 5.8034 -1.4307 10 6 4.1415 6.0579 -2.7186 11 6 3.4669 6.9845 -3.4983 12 6 2.3659 7.6600 -2.9941 13 6 1.9313 7.4169 -1.7114 14 6 2.6084 6.4783 -0.9108 15 6 2.1704 6.2199 0.4085 16 1 2.8716 5.8691 1.1514 17 6 0.8284 6.4186 0.7519 18 7 0.4863 6.5442 2.0084 19 14 -0.4746 6.5046 -0.5839 20 1 -0.6374 7.9127 -1.0266 21 1 -0.0567 5.6681 -1.7376 22 1 -1.7654 6.0013 -0.0494 23 6 4.2870 -0.0100 0.0010 24 6 3.6041 -1.2052 0.0067 25 6 2.2064 -1.2097 0.0064 26 6 1.4709 -2.4893 0.0122 27 7 2.1403 -3.6519 -0.1159 28 8 0.2609 -2.4945 0.1325 29 1 -0.3634 -0.1091 1.0219 30 1 -0.3633 0.9395 -0.4164 31 1 -0.3633 -0.8304 -0.6054 32 1 1.6563 2.1272 -0.0004 33 1 5.1185 2.4824 0.4749 34 1 5.4970 4.7180 -0.9326 35 1 4.4625 5.1298 0.4561 36 1 4.9976 5.5373 -3.1217 37 1 3.8012 7.1816 -4.5061 38 1 1.8476 8.3795 -3.6105 39 1 1.0732 7.9438 -1.3208 40 1 1.1501 6.4263 2.7058 41 1 5.3670 -0.0060 0.0012 42 1 4.1476 -2.1384 0.0117 43 1 3.1056 -3.6479 -0.2115 44 1 1.6570 -4.4929 -0.1125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776892879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:11 Heat of formation + Delta-G solvation = -57.164339 kcal Electronic energy + Delta-G solvation = -28538.911070 eV Core-core repulsion = 24612.257283 eV Total energy + Delta-G solvation = -3926.653787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.80827 -40.88371 -39.68328 -38.77189 -35.93246 -35.63285 -35.09053 -33.68196 -33.12258 -32.02898 -31.02604 -28.57954 -28.17948 -26.48607 -24.91137 -23.28282 -22.98661 -22.30074 -21.45477 -21.00440 -20.04170 -18.88434 -18.49626 -18.07853 -17.60259 -17.18386 -16.74855 -16.21253 -16.14172 -16.03418 -15.89899 -15.59931 -15.27839 -15.05875 -14.59511 -14.41301 -14.31896 -14.14092 -13.92295 -13.78500 -13.61947 -13.37378 -13.15577 -13.11406 -12.82988 -12.63243 -12.26226 -12.19383 -11.98153 -11.61139 -11.36497 -11.14861 -10.97502 -10.85792 -10.79121 -10.62777 -9.82429 -9.58847 -9.36318 -9.20534 -9.18912 -6.50033 -0.26496 0.33252 0.79386 0.89946 1.28289 1.48300 1.52660 1.68897 1.95699 2.10484 2.12640 2.57584 2.67768 2.80470 3.49048 3.71103 3.80806 3.94915 3.97007 4.14850 4.24393 4.25590 4.37460 4.45400 4.46778 4.53947 4.67230 4.68986 4.71864 4.81808 4.90821 4.96840 5.05796 5.14756 5.24588 5.25802 5.34477 5.49082 5.52780 5.59859 5.81743 5.88639 5.90547 5.93417 6.03003 6.16674 6.43422 6.46623 6.49407 6.73041 6.86209 7.22942 7.34132 8.03758 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.003458 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.909495 B = 8095.967178 C = 9122.671427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.021 4.021 3 C -0.164 4.164 4 C 0.178 3.822 5 N -0.668 5.668 6 C 0.516 3.484 7 O -0.544 6.544 8 C -0.068 4.068 9 C -0.181 4.181 10 C -0.075 4.075 11 C -0.236 4.236 12 C -0.087 4.087 13 C -0.272 4.272 14 C 0.087 3.913 15 C -0.531 4.531 16 H 0.063 0.937 17 C 0.017 3.983 18 N -0.848 5.848 19 Si 1.095 2.905 20 H -0.257 1.257 21 H -0.279 1.279 22 H -0.289 1.289 23 C -0.151 4.151 24 C -0.042 4.042 25 C -0.181 4.181 26 C 0.563 3.437 27 N -0.827 5.827 28 O -0.580 6.580 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.430 0.570 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.279 0.721 41 H 0.176 0.824 42 H 0.182 0.818 43 H 0.417 0.583 44 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.589 -17.448 -3.093 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.023 4.023 3 C -0.185 4.185 4 C 0.082 3.918 5 N -0.316 5.316 6 C 0.305 3.695 7 O -0.419 6.419 8 C -0.107 4.107 9 C -0.183 4.183 10 C -0.093 4.093 11 C -0.255 4.255 12 C -0.105 4.105 13 C -0.291 4.291 14 C 0.084 3.916 15 C -0.561 4.561 16 H 0.081 0.919 17 C -0.197 4.197 18 N -0.473 5.473 19 Si 0.920 3.080 20 H -0.183 1.183 21 H -0.204 1.204 22 H -0.217 1.217 23 C -0.171 4.171 24 C -0.061 4.061 25 C -0.185 4.185 26 C 0.350 3.650 27 N -0.392 5.392 28 O -0.461 6.461 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.270 0.730 34 H 0.148 0.852 35 H 0.113 0.887 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.193 0.807 42 H 0.199 0.801 43 H 0.250 0.750 44 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 10.574 -17.021 -3.634 20.365 hybrid contribution 1.570 0.108 1.009 1.869 sum 12.144 -16.913 -2.626 20.986 Atomic orbital electron populations 1.21001 0.91056 1.02179 1.03036 1.19913 0.96546 0.91819 0.93987 1.20928 0.94343 0.97667 1.05553 1.18202 0.90713 0.87069 0.95823 1.43503 1.26897 1.09209 1.51942 1.21431 0.84023 0.86342 0.77694 1.90719 1.26914 1.84594 1.39638 1.20334 0.99911 0.88530 1.01909 1.19442 1.01342 1.01729 0.95755 1.20907 0.98898 0.96645 0.92835 1.20880 1.00181 1.03587 1.00811 1.20994 0.96470 0.98526 0.94467 1.21303 1.05226 1.04814 0.97722 1.17780 0.91869 0.89515 0.92410 1.20505 0.96180 1.43064 0.96341 0.91915 1.27768 1.01246 0.89837 1.00889 1.70605 1.40516 1.34730 1.01426 0.83293 0.73034 0.78584 0.73091 1.18321 1.20413 1.21667 1.21217 1.01919 0.89163 1.04816 1.21488 0.91166 0.99638 0.93828 1.19767 0.95015 0.92046 1.11632 1.18230 0.86430 0.85089 0.75220 1.43499 1.12760 1.07390 1.75577 1.90769 1.15786 1.87853 1.51719 0.91023 0.93676 0.89068 0.88549 0.72988 0.85242 0.88683 0.85362 0.85461 0.86059 0.88629 0.91036 0.80669 0.80115 0.75007 0.75459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 8.73 71.24 0.62 -3.40 16 2 C -0.02 -0.69 5.91 -19.63 -0.12 -0.80 16 3 C -0.16 -5.96 8.25 22.35 0.18 -5.78 16 4 C 0.18 5.00 6.23 38.36 0.24 5.24 16 5 N -0.67 -17.87 5.31 -303.51 -1.61 -19.49 16 6 C 0.52 18.95 7.52 87.66 0.66 19.61 16 7 O -0.54 -25.92 13.89 -3.02 -0.04 -25.96 16 8 C -0.07 -2.32 5.36 29.10 0.16 -2.16 16 9 C -0.18 -7.91 4.43 -19.40 -0.09 -8.00 16 10 C -0.07 -2.93 9.66 22.22 0.21 -2.71 16 11 C -0.24 -9.24 10.05 22.46 0.23 -9.02 16 12 C -0.09 -3.71 10.02 22.22 0.22 -3.49 16 13 C -0.27 -13.50 7.31 22.73 0.17 -13.34 16 14 C 0.09 4.45 5.18 -21.29 -0.11 4.34 16 15 C -0.53 -29.11 8.84 23.46 0.21 -28.90 16 16 H 0.06 3.45 6.53 -2.91 -0.02 3.43 16 17 C 0.02 0.94 5.41 85.26 0.46 1.40 16 18 N -0.85 -48.34 13.65 21.83 0.30 -48.04 16 19 Si 1.09 54.74 24.89 68.60 1.71 56.44 16 20 H -0.26 -11.77 6.40 99.48 0.64 -11.13 16 21 H -0.28 -14.67 7.03 99.48 0.70 -13.97 16 22 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 23 C -0.15 -2.66 9.94 22.35 0.22 -2.44 16 24 C -0.04 -0.66 9.51 22.50 0.21 -0.45 16 25 C -0.18 -4.41 5.88 -20.08 -0.12 -4.53 16 26 C 0.56 13.01 7.96 86.71 0.69 13.70 16 27 N -0.83 -9.31 8.82 -175.77 -1.55 -10.86 16 28 O -0.58 -18.39 14.17 -4.01 -0.06 -18.45 16 29 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 31 H 0.09 3.14 5.84 -2.39 -0.01 3.13 16 32 H 0.10 4.40 6.58 -2.91 -0.02 4.38 16 33 H 0.43 7.31 8.82 -92.71 -0.82 6.49 16 34 H 0.13 3.11 8.06 -2.39 -0.02 3.09 16 35 H 0.10 3.33 6.49 -2.38 -0.02 3.32 16 36 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 37 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 38 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 39 H 0.10 4.82 4.20 -2.91 -0.01 4.80 16 40 H 0.28 15.48 8.73 -92.71 -0.81 14.67 16 41 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.18 0.80 6.45 -2.91 -0.02 0.78 16 43 H 0.42 1.54 6.89 -92.71 -0.64 0.90 16 44 H 0.41 3.58 8.93 -92.71 -0.83 2.75 16 Total: -1.00 -81.31 363.39 1.50 -79.81 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -1.30 Total: 27.26 kcal Atomic # 6 Polarization: -44.77 SS G_CDS: 4.05 Total: -40.72 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -2.86 Total: -78.39 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -0.10 Total: -44.41 kcal Atomic # 14 Polarization: 54.74 SS G_CDS: 1.71 Total: 56.44 kcal Total: -81.31 1.50 -79.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776892879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.644 kcal (2) G-P(sol) polarization free energy of solvation -81.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds