Wall clock time and date at job start Tue Mar 31 2020 20:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38083 * 120.42082 * 2 1 4 4 N 1.31910 * 121.19587 * 180.02562 * 3 2 1 5 5 C 1.32435 * 121.81116 * 0.02562 * 4 3 2 6 6 C 1.39383 * 119.95989 * 359.82440 * 5 4 3 7 7 C 1.38664 * 119.64490 * 0.24240 * 6 5 4 8 8 N 1.40410 * 120.00679 * 180.27170 * 6 5 4 9 9 C 1.34781 * 121.19200 * 166.34179 * 8 6 5 10 10 O 1.21291 * 119.99911 * 4.25225 * 9 8 6 11 11 C 1.50698 * 120.00081 * 184.26016 * 9 8 6 12 12 C 1.50702 * 109.47113 * 175.04479 * 11 9 8 13 13 C 1.37640 * 120.12548 * 265.30239 * 12 11 9 14 14 C 1.38611 * 120.24958 * 180.32082 * 13 12 11 15 15 C 1.38662 * 120.49591 * 359.67091 * 14 13 12 16 16 C 1.37588 * 120.25262 * 0.02562 * 15 14 13 17 17 C 1.40690 * 120.12959 * 84.99850 * 12 11 9 18 18 C 1.41398 * 120.24713 * 359.97437 * 17 12 11 19 19 H 1.08002 * 119.99731 * 334.58469 * 18 17 12 20 20 C 1.39938 * 120.00376 * 154.58296 * 18 17 12 21 21 N 1.30825 * 120.00063 * 334.87189 * 20 18 17 22 22 Si 1.86798 * 120.00493 * 154.87154 * 20 18 17 23 23 H 1.48497 * 109.47453 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.46880 * 300.00357 * 22 20 18 25 25 H 1.48508 * 109.46788 * 59.99812 * 22 20 18 26 26 C 1.47338 * 117.61785 * 346.61234 * 8 6 5 27 27 C 1.53166 * 107.71895 * 41.36679 * 26 8 6 28 28 O 1.35780 * 119.52863 * 179.55416 * 5 4 3 29 29 H 1.08992 * 109.47259 * 270.01796 * 1 2 3 30 30 H 1.08996 * 109.47501 * 30.02023 * 1 2 3 31 31 H 1.09000 * 109.46852 * 150.01707 * 1 2 3 32 32 H 1.08007 * 119.40601 * 0.05131 * 3 2 1 33 33 H 1.08000 * 120.88318 * 179.83095 * 7 6 5 34 34 H 1.08994 * 109.47176 * 55.03956 * 11 9 8 35 35 H 1.08998 * 109.47100 * 295.04058 * 11 9 8 36 36 H 1.08010 * 119.87647 * 0.02562 * 13 12 11 37 37 H 1.08001 * 119.75106 * 179.69331 * 14 13 12 38 38 H 1.07999 * 119.87254 * 180.02562 * 15 14 13 39 39 H 1.07999 * 120.13166 * 180.02562 * 16 15 14 40 40 H 0.97004 * 119.99936 * 354.72306 * 21 20 18 41 41 H 1.08996 * 109.84965 * 160.96252 * 26 8 6 42 42 H 1.09000 * 109.84863 * 281.95443 * 26 8 6 43 43 H 1.09004 * 109.62168 * 182.17217 * 27 26 8 44 44 H 1.08994 * 109.40391 * 61.88242 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.1907 0.0000 4 7 3.5252 1.2086 -0.0005 5 6 4.2384 0.0927 -0.0015 6 6 3.5958 -1.1442 0.0016 7 6 2.2102 -1.1972 0.0007 8 7 4.3511 -2.3278 0.0063 9 6 3.7817 -3.5180 0.2816 10 8 2.5835 -3.5914 0.4552 11 6 4.6338 -4.7576 0.3738 12 6 3.7814 -5.9219 0.8084 13 6 3.7076 -6.2653 2.1392 14 6 2.9297 -7.3398 2.5411 15 6 2.2124 -8.0762 1.6105 16 6 2.2663 -7.7472 0.2756 17 6 3.0529 -6.6581 -0.1438 18 6 3.1154 -6.3103 -1.5129 19 1 3.3547 -5.2977 -1.8024 20 6 2.8674 -7.2780 -2.4928 21 7 3.0618 -8.5440 -2.2260 22 14 2.2587 -6.7625 -4.1819 23 1 2.0749 -7.9670 -5.0308 24 1 0.9629 -6.0503 -4.0450 25 1 3.2552 -5.8602 -4.8130 26 6 5.7895 -2.2215 -0.2946 27 6 6.3262 -0.9816 0.4270 28 8 5.5942 0.1651 -0.0112 29 1 -0.3633 0.0003 1.0276 30 1 -0.3634 0.8897 -0.5141 31 1 -0.3633 -0.8902 -0.5136 32 1 1.6633 2.1245 0.0008 33 1 1.6917 -2.1446 0.0003 34 1 5.4295 -4.5982 1.1014 35 1 5.0708 -4.9714 -0.6016 36 1 4.2618 -5.6983 2.8727 37 1 2.8815 -7.6053 3.5868 38 1 1.6091 -8.9113 1.9348 39 1 1.7065 -8.3218 -0.4474 40 1 3.4499 -8.8065 -1.3766 41 1 6.3090 -3.1107 0.0623 42 1 5.9358 -2.1127 -1.3692 43 1 7.3830 -0.8512 0.1939 44 1 6.2005 -1.1058 1.5025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777084152.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:51 Heat of formation + Delta-G solvation = -5.229883 kcal Electronic energy + Delta-G solvation = -29321.797318 eV Core-core repulsion = 25397.395578 eV Total energy + Delta-G solvation = -3924.401740 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.52290 -39.35938 -38.51416 -37.69406 -35.39564 -33.94782 -33.22678 -32.43828 -31.19282 -29.32064 -29.14588 -27.10977 -26.82197 -25.06457 -24.02386 -23.88341 -21.62396 -21.02519 -20.27578 -19.11821 -18.53820 -17.82772 -17.49734 -17.13124 -16.09222 -15.66756 -15.32858 -15.06721 -14.98269 -14.41725 -14.34911 -14.23106 -13.97354 -13.79922 -13.44458 -13.23969 -12.95947 -12.76327 -12.49003 -12.39872 -12.11622 -12.04591 -11.81383 -11.65975 -11.44651 -11.29179 -11.13099 -10.93557 -10.58361 -10.54263 -10.44323 -9.95297 -9.75322 -9.46678 -9.06496 -9.03899 -8.81368 -7.85869 -7.66215 -7.59808 -7.20930 -4.51781 1.06891 1.34333 2.47175 2.69236 2.77020 2.87647 2.90901 3.11395 3.23343 3.32482 3.81081 3.96089 4.21370 4.38564 4.51437 4.67045 4.75387 4.84704 4.87952 5.00702 5.12949 5.13758 5.26944 5.42195 5.47348 5.60503 5.62278 5.75546 5.78101 5.91924 5.96676 6.05712 6.15371 6.26411 6.31225 6.40278 6.57097 6.61609 6.90850 7.10053 7.10793 7.23373 7.33947 7.60728 7.73938 7.75608 7.86620 7.99737 8.11205 8.24904 8.35340 8.68748 8.83315 9.99522 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.010994 B = 0.003956 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.332265 B = 7076.002318 C = 7547.589525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.146 4.146 3 C 0.101 3.899 4 N -0.478 5.478 5 C 0.283 3.717 6 C 0.057 3.943 7 C -0.084 4.084 8 N -0.564 5.564 9 C 0.520 3.480 10 O -0.490 6.490 11 C -0.064 4.064 12 C -0.195 4.195 13 C -0.066 4.066 14 C -0.253 4.253 15 C -0.083 4.083 16 C -0.215 4.215 17 C 0.119 3.881 18 C -0.515 4.515 19 H 0.071 0.929 20 C 0.041 3.959 21 N -0.795 5.795 22 Si 1.058 2.942 23 H -0.273 1.273 24 H -0.274 1.274 25 H -0.277 1.277 26 C 0.062 3.938 27 C 0.054 3.946 28 O -0.301 6.301 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.160 0.840 33 H 0.184 0.816 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.300 0.700 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.129 0.871 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.926 12.597 2.278 13.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.149 4.149 3 C -0.056 4.056 4 N -0.197 5.197 5 C 0.102 3.898 6 C -0.041 4.041 7 C -0.111 4.111 8 N -0.291 5.291 9 C 0.312 3.688 10 O -0.362 6.362 11 C -0.103 4.103 12 C -0.196 4.196 13 C -0.085 4.085 14 C -0.272 4.272 15 C -0.102 4.102 16 C -0.234 4.234 17 C 0.116 3.884 18 C -0.542 4.542 19 H 0.089 0.911 20 C -0.181 4.181 21 N -0.418 5.418 22 Si 0.882 3.118 23 H -0.197 1.197 24 H -0.199 1.199 25 H -0.202 1.202 26 C -0.060 4.060 27 C -0.023 4.023 28 O -0.211 6.211 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.177 0.823 33 H 0.201 0.799 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.133 0.867 42 H 0.109 0.891 43 H 0.147 0.853 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.432 12.696 0.857 13.179 hybrid contribution 0.181 -0.343 1.641 1.687 sum 3.614 12.352 2.498 13.110 Atomic orbital electron populations 1.20638 0.89853 1.03059 1.02531 1.20877 0.97875 0.93295 1.02836 1.22260 0.87591 0.97798 0.97958 1.66809 1.08296 1.28394 1.16158 1.18972 0.84087 0.87513 0.99261 1.18892 0.92662 0.86133 1.06370 1.22504 0.91587 1.01500 0.95543 1.46090 1.09006 1.05549 1.68497 1.21650 0.89424 0.83228 0.74522 1.90472 1.15168 1.84200 1.46365 1.20284 0.96792 0.89920 1.03312 1.18922 1.05878 1.01283 0.93559 1.20352 0.97760 0.96189 0.94165 1.20263 1.07865 1.01864 0.97241 1.20628 0.97988 0.97787 0.93789 1.21158 1.04508 1.02986 0.94753 1.17364 0.88062 0.90235 0.92748 1.20440 1.43874 0.98677 0.91253 0.91108 1.26924 0.92721 0.92812 1.05646 1.70467 1.26533 1.17774 1.27044 0.83729 0.77796 0.76669 0.73617 1.19734 1.19947 1.20209 1.22686 0.80584 1.00663 1.02096 1.23320 0.96367 0.83531 0.99085 1.85898 1.13846 1.39874 1.81452 0.91029 0.91331 0.91057 0.82280 0.79944 0.90281 0.88002 0.89638 0.89366 0.89276 0.87640 0.88634 0.86709 0.89114 0.85280 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.04 36.01 0.36 -0.75 16 2 C -0.15 -2.03 5.90 -104.46 -0.62 -2.64 16 3 C 0.10 1.35 10.83 -17.57 -0.19 1.16 16 4 N -0.48 -7.55 10.38 -13.15 -0.14 -7.69 16 5 C 0.28 4.53 7.58 -16.87 -0.13 4.40 16 6 C 0.06 0.95 6.34 -83.34 -0.53 0.42 16 7 C -0.08 -1.42 8.80 -39.20 -0.35 -1.77 16 8 N -0.56 -8.90 3.02 -112.49 -0.34 -9.24 16 9 C 0.52 9.78 7.28 -10.98 -0.08 9.70 16 10 O -0.49 -10.93 12.78 5.55 0.07 -10.86 16 11 C -0.06 -1.15 3.68 -29.03 -0.11 -1.26 16 12 C -0.19 -4.39 4.44 -103.91 -0.46 -4.85 16 13 C -0.07 -1.44 9.66 -39.66 -0.38 -1.82 16 14 C -0.25 -5.57 10.05 -39.29 -0.39 -5.96 16 15 C -0.08 -1.92 10.02 -39.66 -0.40 -2.32 16 16 C -0.21 -5.42 7.93 -38.87 -0.31 -5.73 16 17 C 0.12 3.00 5.31 -106.82 -0.57 2.43 16 18 C -0.51 -12.98 8.09 -37.74 -0.31 -13.29 16 19 H 0.07 1.76 6.72 -52.49 -0.35 1.41 16 20 C 0.04 1.01 4.95 -17.34 -0.09 0.93 16 21 N -0.80 -20.40 12.32 55.55 0.68 -19.71 16 22 Si 1.06 21.44 30.00 -169.99 -5.10 16.34 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 26 C 0.06 0.68 6.51 -3.50 -0.02 0.66 16 27 C 0.05 0.52 7.15 37.24 0.27 0.79 16 28 O -0.30 -4.24 10.41 -19.05 -0.20 -4.44 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 33 H 0.18 3.49 5.02 -53.05 -0.27 3.23 16 34 H 0.08 1.15 7.37 -51.93 -0.38 0.77 16 35 H 0.10 1.82 7.05 -51.93 -0.37 1.45 16 36 H 0.09 1.62 8.06 -52.48 -0.42 1.19 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.11 2.75 6.45 -52.49 -0.34 2.42 16 40 H 0.30 7.86 6.61 -40.82 -0.27 7.59 16 41 H 0.11 0.99 6.21 -51.93 -0.32 0.67 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.13 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -31.43 361.21 -9.19 -40.62 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.32 Total: 9.42 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -4.29 Total: -19.89 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.21 Total: -36.64 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.13 Total: -15.30 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.10 Total: 16.34 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.43 -9.19 -40.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777084152.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.387 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds