Wall clock time and date at job start Tue Mar 31 2020 20:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38083 * 120.42082 * 2 1 4 4 N 1.31910 * 121.19587 * 180.02562 * 3 2 1 5 5 C 1.32435 * 121.81116 * 0.02562 * 4 3 2 6 6 C 1.39383 * 119.95989 * 359.82440 * 5 4 3 7 7 C 1.38664 * 119.64490 * 0.24240 * 6 5 4 8 8 N 1.40410 * 120.00679 * 180.27170 * 6 5 4 9 9 C 1.34781 * 121.19200 * 166.34179 * 8 6 5 10 10 O 1.21291 * 119.99911 * 4.25225 * 9 8 6 11 11 C 1.50698 * 120.00081 * 184.26016 * 9 8 6 12 12 C 1.50702 * 109.47113 * 175.04479 * 11 9 8 13 13 C 1.37640 * 120.12548 * 265.30239 * 12 11 9 14 14 C 1.38611 * 120.24958 * 180.32082 * 13 12 11 15 15 C 1.38662 * 120.49591 * 359.67091 * 14 13 12 16 16 C 1.37588 * 120.25262 * 0.02562 * 15 14 13 17 17 C 1.40690 * 120.12959 * 84.99850 * 12 11 9 18 18 C 1.41398 * 120.24713 * 359.97437 * 17 12 11 19 19 H 1.08002 * 119.99731 * 334.58469 * 18 17 12 20 20 C 1.39938 * 120.00376 * 154.58296 * 18 17 12 21 21 N 1.30825 * 120.00063 * 334.87189 * 20 18 17 22 22 Si 1.86798 * 120.00493 * 154.87154 * 20 18 17 23 23 H 1.48497 * 109.47453 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.46880 * 300.00357 * 22 20 18 25 25 H 1.48508 * 109.46788 * 59.99812 * 22 20 18 26 26 C 1.47338 * 117.61785 * 346.61234 * 8 6 5 27 27 C 1.53166 * 107.71895 * 41.36679 * 26 8 6 28 28 O 1.35780 * 119.52863 * 179.55416 * 5 4 3 29 29 H 1.08992 * 109.47259 * 270.01796 * 1 2 3 30 30 H 1.08996 * 109.47501 * 30.02023 * 1 2 3 31 31 H 1.09000 * 109.46852 * 150.01707 * 1 2 3 32 32 H 1.08007 * 119.40601 * 0.05131 * 3 2 1 33 33 H 1.08000 * 120.88318 * 179.83095 * 7 6 5 34 34 H 1.08994 * 109.47176 * 55.03956 * 11 9 8 35 35 H 1.08998 * 109.47100 * 295.04058 * 11 9 8 36 36 H 1.08010 * 119.87647 * 0.02562 * 13 12 11 37 37 H 1.08001 * 119.75106 * 179.69331 * 14 13 12 38 38 H 1.07999 * 119.87254 * 180.02562 * 15 14 13 39 39 H 1.07999 * 120.13166 * 180.02562 * 16 15 14 40 40 H 0.97004 * 119.99936 * 354.72306 * 21 20 18 41 41 H 1.08996 * 109.84965 * 160.96252 * 26 8 6 42 42 H 1.09000 * 109.84863 * 281.95443 * 26 8 6 43 43 H 1.09004 * 109.62168 * 182.17217 * 27 26 8 44 44 H 1.08994 * 109.40391 * 61.88242 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.1907 0.0000 4 7 3.5252 1.2086 -0.0005 5 6 4.2384 0.0927 -0.0015 6 6 3.5958 -1.1442 0.0016 7 6 2.2102 -1.1972 0.0007 8 7 4.3511 -2.3278 0.0063 9 6 3.7817 -3.5180 0.2816 10 8 2.5835 -3.5914 0.4552 11 6 4.6338 -4.7576 0.3738 12 6 3.7814 -5.9219 0.8084 13 6 3.7076 -6.2653 2.1392 14 6 2.9297 -7.3398 2.5411 15 6 2.2124 -8.0762 1.6105 16 6 2.2663 -7.7472 0.2756 17 6 3.0529 -6.6581 -0.1438 18 6 3.1154 -6.3103 -1.5129 19 1 3.3547 -5.2977 -1.8024 20 6 2.8674 -7.2780 -2.4928 21 7 3.0618 -8.5440 -2.2260 22 14 2.2587 -6.7625 -4.1819 23 1 2.0749 -7.9670 -5.0308 24 1 0.9629 -6.0503 -4.0450 25 1 3.2552 -5.8602 -4.8130 26 6 5.7895 -2.2215 -0.2946 27 6 6.3262 -0.9816 0.4270 28 8 5.5942 0.1651 -0.0112 29 1 -0.3633 0.0003 1.0276 30 1 -0.3634 0.8897 -0.5141 31 1 -0.3633 -0.8902 -0.5136 32 1 1.6633 2.1245 0.0008 33 1 1.6917 -2.1446 0.0003 34 1 5.4295 -4.5982 1.1014 35 1 5.0708 -4.9714 -0.6016 36 1 4.2618 -5.6983 2.8727 37 1 2.8815 -7.6053 3.5868 38 1 1.6091 -8.9113 1.9348 39 1 1.7065 -8.3218 -0.4474 40 1 3.4499 -8.8065 -1.3766 41 1 6.3090 -3.1107 0.0623 42 1 5.9358 -2.1127 -1.3692 43 1 7.3830 -0.8512 0.1939 44 1 6.2005 -1.1058 1.5025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777084152.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:50 Heat of formation + Delta-G solvation = -24.485524 kcal Electronic energy + Delta-G solvation = -29322.632305 eV Core-core repulsion = 25397.395578 eV Total energy + Delta-G solvation = -3925.236727 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.67094 -40.74512 -39.57037 -39.37122 -36.65170 -35.77872 -34.31660 -33.87365 -32.40697 -31.12981 -30.28808 -28.53330 -27.94416 -26.86807 -25.11865 -24.96155 -22.93555 -22.83109 -21.76563 -20.42614 -19.69475 -19.50474 -18.65339 -18.37640 -17.26817 -16.99525 -16.75431 -16.43205 -16.21848 -16.01437 -15.85525 -15.46344 -15.27287 -15.07294 -14.66373 -14.38829 -14.24601 -14.13747 -13.89862 -13.79108 -13.57683 -13.35956 -13.02751 -12.94387 -12.91772 -12.65115 -12.53108 -12.28168 -12.08615 -12.02549 -11.72697 -11.51698 -11.25461 -11.23856 -10.87173 -10.31047 -10.00486 -9.47863 -9.45409 -9.09039 -8.99147 -6.42944 -0.06352 0.14808 0.83756 0.96732 1.44384 1.51369 1.52468 1.58728 1.72546 1.79858 2.27197 2.67153 2.68852 3.20483 3.35631 3.55149 3.74644 3.84184 3.89843 3.93299 3.99310 4.09515 4.14530 4.20842 4.26496 4.44352 4.50676 4.53159 4.61916 4.64929 4.70070 4.80329 4.80960 4.92113 5.03542 5.04963 5.24005 5.29070 5.33995 5.46562 5.52923 5.75025 5.81841 5.94629 5.98867 6.01906 6.06081 6.26507 6.42552 6.82336 6.89016 6.98386 6.99000 8.06623 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.010994 B = 0.003956 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.332265 B = 7076.002318 C = 7547.589525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.145 4.145 3 C 0.109 3.891 4 N -0.496 5.496 5 C 0.279 3.721 6 C 0.036 3.964 7 C -0.110 4.110 8 N -0.561 5.561 9 C 0.519 3.481 10 O -0.538 6.538 11 C -0.060 4.060 12 C -0.195 4.195 13 C -0.076 4.076 14 C -0.250 4.250 15 C -0.094 4.094 16 C -0.244 4.244 17 C 0.091 3.909 18 C -0.537 4.537 19 H 0.065 0.935 20 C 0.008 3.992 21 N -0.817 5.817 22 Si 1.101 2.899 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.256 1.256 26 C 0.053 3.947 27 C 0.052 3.948 28 O -0.312 6.312 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.200 0.800 33 H 0.156 0.844 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.286 0.714 41 H 0.141 0.859 42 H 0.097 0.903 43 H 0.175 0.825 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.335 14.912 3.031 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.148 4.148 3 C -0.048 4.048 4 N -0.215 5.215 5 C 0.098 3.902 6 C -0.061 4.061 7 C -0.137 4.137 8 N -0.287 5.287 9 C 0.311 3.689 10 O -0.414 6.414 11 C -0.099 4.099 12 C -0.197 4.197 13 C -0.095 4.095 14 C -0.269 4.269 15 C -0.113 4.113 16 C -0.263 4.263 17 C 0.088 3.912 18 C -0.566 4.566 19 H 0.083 0.917 20 C -0.209 4.209 21 N -0.441 5.441 22 Si 0.920 3.080 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.180 1.180 26 C -0.068 4.068 27 C -0.023 4.023 28 O -0.221 6.221 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.216 0.784 33 H 0.173 0.827 34 H 0.140 0.860 35 H 0.121 0.879 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.159 0.841 42 H 0.115 0.885 43 H 0.192 0.808 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.899 15.029 1.618 15.890 hybrid contribution -0.238 -0.985 1.580 1.878 sum 4.661 14.044 3.198 15.139 Atomic orbital electron populations 1.20707 0.87736 1.03959 1.03433 1.21188 0.99420 0.92511 1.01698 1.22897 0.87064 0.98985 0.95865 1.66925 1.09372 1.28405 1.16784 1.19108 0.84976 0.87140 0.98995 1.19014 0.92770 0.86736 1.07605 1.22431 0.92332 1.01599 0.97333 1.46062 1.10807 1.04460 1.67372 1.21627 0.88803 0.84205 0.74241 1.90480 1.16990 1.85139 1.48762 1.20298 0.96909 0.88185 1.04519 1.19407 1.04967 1.01660 0.93677 1.20798 0.97804 0.96291 0.94559 1.20706 1.06538 1.01207 0.98487 1.20907 0.98488 0.98665 0.93199 1.21153 1.05702 1.03973 0.95511 1.17722 0.88819 0.90979 0.93659 1.20500 1.45721 0.98492 0.91851 0.91651 1.28080 0.91969 0.92398 1.08478 1.70559 1.28526 1.18479 1.26524 0.83189 0.77689 0.76780 0.70338 1.19255 1.20155 1.17975 1.23094 0.78060 1.02663 1.02985 1.23719 0.97841 0.81582 0.99148 1.85896 1.12856 1.41873 1.81516 0.90015 0.88238 0.92323 0.78365 0.82734 0.85991 0.87901 0.86192 0.86392 0.87353 0.89875 0.90168 0.84081 0.88487 0.80818 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 10.04 71.24 0.72 -1.32 16 2 C -0.15 -3.93 5.90 -19.76 -0.12 -4.05 16 3 C 0.11 2.68 10.83 84.64 0.92 3.59 16 4 N -0.50 -14.86 10.38 -308.22 -3.20 -18.06 16 5 C 0.28 8.61 7.58 84.88 0.64 9.25 16 6 C 0.04 1.20 6.34 38.14 0.24 1.44 16 7 C -0.11 -3.79 8.80 22.52 0.20 -3.59 16 8 N -0.56 -17.27 3.02 -628.20 -1.89 -19.17 16 9 C 0.52 19.49 7.28 87.66 0.64 20.13 16 10 O -0.54 -24.87 12.78 -3.06 -0.04 -24.91 16 11 C -0.06 -2.10 3.68 29.10 0.11 -1.99 16 12 C -0.20 -8.76 4.44 -19.41 -0.09 -8.85 16 13 C -0.08 -3.18 9.66 22.22 0.21 -2.97 16 14 C -0.25 -10.65 10.05 22.46 0.23 -10.42 16 15 C -0.09 -4.38 10.02 22.22 0.22 -4.16 16 16 C -0.24 -12.84 7.93 22.73 0.18 -12.66 16 17 C 0.09 4.73 5.31 -21.29 -0.11 4.62 16 18 C -0.54 -28.15 8.09 23.46 0.19 -27.96 16 19 H 0.07 3.39 6.72 -2.91 -0.02 3.37 16 20 C 0.01 0.39 4.95 85.25 0.42 0.81 16 21 N -0.82 -43.79 12.32 21.82 0.27 -43.52 16 22 Si 1.10 44.27 30.00 68.60 2.06 46.32 16 23 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 24 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 26 C 0.05 1.03 6.51 86.27 0.56 1.59 16 27 C 0.05 0.85 7.15 72.04 0.52 1.37 16 28 O -0.31 -8.11 10.41 -91.08 -0.95 -9.06 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 1.37 8.09 -2.39 -0.02 1.35 16 31 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 32 H 0.20 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.16 6.32 5.02 -11.77 -0.06 6.26 16 34 H 0.12 3.13 7.37 -2.39 -0.02 3.11 16 35 H 0.10 3.60 7.05 -2.39 -0.02 3.58 16 36 H 0.12 4.12 8.06 -2.91 -0.02 4.09 16 37 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.08 4.64 6.45 -2.91 -0.02 4.62 16 40 H 0.29 15.83 6.61 -92.71 -0.61 15.22 16 41 H 0.14 1.94 6.21 -2.39 -0.01 1.93 16 42 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.17 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -73.05 361.21 3.07 -69.98 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 1.15 Total: 33.57 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 5.68 Total: -35.16 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -4.83 Total: -80.74 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.99 Total: -33.97 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.06 Total: 46.32 kcal Total: -73.05 3.07 -69.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777084152.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.491 kcal (2) G-P(sol) polarization free energy of solvation -73.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds