Wall clock time and date at job start Tue Mar 31 2020 20:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86801 * 119.99984 * 2 1 4 4 H 1.48499 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47109 * 299.99908 * 3 2 1 6 6 H 1.48498 * 109.46813 * 60.00088 * 3 2 1 7 7 C 1.38637 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99760 * 180.02562 * 7 2 1 9 9 O 1.34806 * 120.00248 * 0.27929 * 7 2 1 10 10 C 1.35776 * 117.00442 * 174.65124 * 9 7 2 11 11 C 1.38745 * 120.08189 * 5.77807 * 10 9 7 12 12 C 1.38344 * 119.97152 * 179.74289 * 11 10 9 13 13 F 1.35102 * 119.92080 * 180.25682 * 12 11 10 14 14 C 1.38540 * 120.15360 * 0.53888 * 12 11 10 15 15 C 1.38200 * 120.17559 * 359.74537 * 14 12 11 16 16 C 1.38693 * 120.01712 * 359.97029 * 15 14 12 17 17 N 1.40136 * 120.07160 * 180.02562 * 16 15 14 18 18 C 1.34781 * 119.99875 * 34.06899 * 17 16 15 19 19 O 1.21590 * 119.99868 * 355.21810 * 18 17 16 20 20 N 1.34772 * 120.00061 * 175.21591 * 18 17 16 21 21 C 1.47432 * 125.64759 * 5.02274 * 20 18 17 22 22 C 1.54909 * 104.83299 * 155.83809 * 21 20 18 23 23 C 1.55160 * 101.58263 * 37.00689 * 22 21 20 24 24 C 1.47019 * 125.64961 * 184.71533 * 20 18 17 25 25 H 1.08998 * 109.88337 * 300.51338 * 24 20 18 26 26 C 1.53006 * 109.88248 * 61.67884 * 24 20 18 27 27 C 1.52999 * 109.47149 * 185.41884 * 26 24 20 28 28 O 1.42896 * 109.47090 * 184.91881 * 27 26 24 29 29 H 0.97001 * 120.00148 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.01380 * 0.02562 * 11 10 9 31 31 H 1.08003 * 119.91550 * 179.75780 * 14 12 11 32 32 H 1.07992 * 119.98955 * 180.02562 * 15 14 12 33 33 H 0.97004 * 120.00297 * 214.06409 * 17 16 15 34 34 H 1.08996 * 110.36360 * 274.67178 * 21 20 18 35 35 H 1.08992 * 110.36541 * 36.88734 * 21 20 18 36 36 H 1.08995 * 111.00856 * 155.08235 * 22 21 20 37 37 H 1.09004 * 111.00207 * 278.90054 * 22 21 20 38 38 H 1.08994 * 110.71860 * 82.86333 * 23 22 21 39 39 H 1.09003 * 110.72115 * 206.13711 * 23 22 21 40 40 H 1.08994 * 109.46746 * 305.41836 * 26 24 20 41 41 H 1.09000 * 109.46789 * 65.42116 * 26 24 20 42 42 H 1.09006 * 109.47106 * 304.92096 * 27 26 24 43 43 H 1.09004 * 109.46996 * 64.91488 * 27 26 24 44 44 H 0.96700 * 114.00144 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7097 1.3464 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3681 -0.0046 10 6 2.0702 -3.5040 -0.1166 11 6 3.4560 -3.4400 -0.0986 12 6 4.2029 -4.5994 -0.2074 13 9 5.5523 -4.5363 -0.1845 14 6 3.5705 -5.8242 -0.3457 15 6 2.1905 -5.8946 -0.3703 16 6 1.4346 -4.7375 -0.2558 17 7 0.0352 -4.8076 -0.2801 18 6 -0.5956 -5.8710 0.2565 19 8 0.0497 -6.8090 0.6832 20 7 -1.9416 -5.8945 0.3201 21 6 -2.8466 -4.8798 -0.2499 22 6 -4.1872 -5.6237 -0.4716 23 6 -4.2331 -6.5584 0.7660 24 6 -2.7509 -6.9396 0.9638 25 1 -2.5489 -7.9042 0.4983 26 6 -2.4275 -7.0017 2.4580 27 6 -3.1720 -8.1781 3.0926 28 8 -2.9618 -8.1682 4.5059 29 1 -0.4850 0.8400 -0.0004 30 1 3.9514 -2.4858 0.0050 31 1 4.1575 -6.7265 -0.4343 32 1 1.7007 -6.8510 -0.4778 33 1 -0.4795 -4.0908 -0.6829 34 1 -2.9815 -4.0556 0.4506 35 1 -2.4543 -4.5110 -1.1975 36 1 -5.0259 -4.9275 -0.4667 37 1 -4.1658 -6.2000 -1.3966 38 1 -4.6180 -6.0272 1.6364 39 1 -4.8324 -7.4448 0.5578 40 1 -1.3542 -7.1361 2.5921 41 1 -2.7400 -6.0734 2.9363 42 1 -4.2380 -8.0889 2.8831 43 1 -2.7968 -9.1128 2.6759 44 1 -3.4056 -8.8883 4.9746 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779442436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:21 Heat of formation + Delta-G solvation = -141.779662 kcal Electronic energy + Delta-G solvation = -29652.057392 eV Core-core repulsion = 25290.965185 eV Total energy + Delta-G solvation = -4361.092207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.84348 -41.94281 -40.75204 -39.19612 -37.96883 -37.62184 -35.67079 -34.32351 -33.35004 -32.53695 -31.07550 -29.71159 -28.10509 -27.40761 -25.16427 -23.96852 -23.40647 -23.02558 -21.79013 -20.70830 -20.15347 -19.73271 -19.04199 -18.23427 -18.13525 -17.32284 -17.06581 -16.85642 -16.66517 -16.45147 -16.16985 -15.97938 -15.54837 -15.42103 -15.28644 -14.96638 -14.91646 -14.37866 -14.12715 -14.08058 -14.01049 -13.75231 -13.44765 -13.35006 -13.08958 -12.92043 -12.59374 -12.37162 -12.15543 -12.13701 -12.07185 -11.78500 -11.66522 -11.63817 -11.32270 -11.02578 -10.84508 -10.82451 -9.81305 -9.54631 -8.75796 -8.51964 -6.18437 0.18999 0.44289 1.36326 1.42142 1.43361 1.52699 1.99146 2.13314 2.66259 2.81045 3.03899 3.15611 3.37299 3.43423 3.57006 3.62404 3.92807 4.01537 4.13664 4.14372 4.22058 4.27142 4.34635 4.41058 4.52339 4.54178 4.59720 4.73536 4.89348 4.90212 4.92937 5.00480 5.06886 5.12063 5.15516 5.20064 5.26364 5.32295 5.35932 5.43495 5.55848 5.92231 5.93713 6.04446 6.79739 6.92295 6.93645 7.39427 7.61731 8.68707 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009722 B = 0.003628 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.246401 B = 7716.402701 C = 9479.364536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.008 4.008 3 Si 1.012 2.988 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.270 1.270 7 C -0.417 4.417 8 H 0.099 0.901 9 O -0.203 6.203 10 C 0.130 3.870 11 C -0.263 4.263 12 C 0.123 3.877 13 F -0.144 7.144 14 C -0.203 4.203 15 C -0.052 4.052 16 C 0.077 3.923 17 N -0.666 5.666 18 C 0.717 3.283 19 O -0.607 6.607 20 N -0.630 5.630 21 C 0.085 3.915 22 C -0.117 4.117 23 C -0.119 4.119 24 C 0.157 3.843 25 H 0.080 0.920 26 C -0.132 4.132 27 C 0.087 3.913 28 O -0.601 6.601 29 H 0.275 0.725 30 H 0.137 0.863 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.410 0.590 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.039 0.961 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.203 -13.164 -0.758 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.208 4.208 3 Si 0.832 3.168 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.195 1.195 7 C -0.493 4.493 8 H 0.116 0.884 9 O -0.108 6.108 10 C 0.076 3.924 11 C -0.283 4.283 12 C 0.103 3.897 13 F -0.122 7.122 14 C -0.222 4.222 15 C -0.073 4.073 16 C -0.019 4.019 17 N -0.313 5.313 18 C 0.420 3.580 19 O -0.488 6.488 20 N -0.367 5.367 21 C -0.038 4.038 22 C -0.154 4.154 23 C -0.156 4.156 24 C 0.054 3.946 25 H 0.098 0.902 26 C -0.171 4.171 27 C 0.009 3.991 28 O -0.410 6.410 29 H 0.084 0.916 30 H 0.155 0.845 31 H 0.176 0.824 32 H 0.170 0.830 33 H 0.247 0.753 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.135 0.865 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -10.754 -13.115 -0.571 16.969 hybrid contribution 0.542 1.070 0.152 1.209 sum -10.212 -12.045 -0.419 15.797 Atomic orbital electron populations 1.70129 1.07521 1.28906 1.47522 1.26385 0.96856 1.02061 0.95462 0.84609 0.78217 0.75311 0.78648 1.18086 1.19021 1.19481 1.21802 0.92539 0.81130 1.53822 0.88384 1.83914 1.34745 1.11885 1.80303 1.19152 0.90197 0.87403 0.95602 1.20914 0.93203 0.99126 1.15106 1.17433 0.76256 0.94185 1.01862 1.91428 1.29411 1.97347 1.94053 1.20876 0.94416 0.96576 1.10364 1.20883 0.92525 0.97189 0.96682 1.16956 0.82406 0.91574 1.10967 1.42258 1.04643 1.23281 1.61082 1.15540 0.81448 0.82570 0.78487 1.90819 1.65106 1.37125 1.55730 1.47696 1.02335 1.27355 1.59315 1.22579 0.91416 0.91414 0.98357 1.22750 0.95021 0.98762 0.98911 1.22826 0.91964 1.01741 0.99105 1.21506 0.91505 0.90904 0.90704 0.90174 1.21869 1.00472 0.99270 0.95509 1.22090 0.99689 0.96852 0.80476 1.86466 1.77858 1.56364 1.20338 0.91593 0.84529 0.82379 0.82982 0.75334 0.92082 0.90833 0.87424 0.89293 0.89695 0.86494 0.94202 0.92665 0.90224 0.92681 0.75079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.08 13.67 21.61 0.30 -50.78 16 2 C -0.01 -0.42 5.49 84.83 0.47 0.04 16 3 Si 1.01 41.15 29.55 68.60 2.03 43.18 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 6 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.42 -23.08 9.49 67.92 0.64 -22.44 16 8 H 0.10 5.12 5.21 -2.91 -0.02 5.10 16 9 O -0.20 -11.33 9.30 -22.78 -0.21 -11.55 16 10 C 0.13 6.38 6.66 22.68 0.15 6.53 16 11 C -0.26 -11.94 9.14 22.42 0.20 -11.73 16 12 C 0.12 4.91 7.29 22.37 0.16 5.07 16 13 F -0.14 -5.39 17.26 44.97 0.78 -4.62 16 14 C -0.20 -7.38 10.02 22.33 0.22 -7.15 16 15 C -0.05 -2.06 8.70 22.37 0.19 -1.86 16 16 C 0.08 3.38 6.34 38.21 0.24 3.62 16 17 N -0.67 -26.97 5.16 -316.70 -1.63 -28.61 16 18 C 0.72 27.25 8.06 179.05 1.44 28.70 16 19 O -0.61 -25.70 12.87 -4.00 -0.05 -25.76 16 20 N -0.63 -18.48 3.07 -805.89 -2.47 -20.95 16 21 C 0.08 1.99 6.52 86.85 0.57 2.56 16 22 C -0.12 -1.63 7.08 31.99 0.23 -1.40 16 23 C -0.12 -1.58 5.54 31.78 0.18 -1.40 16 24 C 0.16 3.54 2.87 45.34 0.13 3.67 16 25 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 26 C -0.13 -3.51 5.06 30.60 0.15 -3.36 16 27 C 0.09 1.61 6.97 71.98 0.50 2.11 16 28 O -0.60 -12.89 13.66 -148.98 -2.03 -14.93 16 29 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.14 6.26 5.64 -2.91 -0.02 6.25 16 31 H 0.16 4.65 8.06 -2.91 -0.02 4.62 16 32 H 0.15 5.81 6.13 -2.91 -0.02 5.79 16 33 H 0.41 16.35 7.11 -92.71 -0.66 15.69 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.76 7.41 -2.39 -0.02 1.74 16 36 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.08 1.11 7.77 -2.39 -0.02 1.09 16 39 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 41 H 0.05 1.60 8.01 -2.39 -0.02 1.58 16 42 H 0.08 0.94 7.35 -2.38 -0.02 0.92 16 43 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.40 4.05 9.12 -74.06 -0.68 3.38 16 Total: -1.00 -73.54 366.94 1.92 -71.62 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: -0.26 Total: 39.44 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 5.49 Total: 2.95 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -3.81 Total: -100.35 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -2.30 Total: -52.23 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.78 Total: -4.62 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -73.54 1.92 -71.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779442436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.163 kcal (2) G-P(sol) polarization free energy of solvation -73.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds