Wall clock time and date at job start Tue Mar 31 2020 21:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38829 * 119.97742 * 2 1 4 4 N 1.38835 * 120.16767 * 359.97438 * 3 2 1 5 5 C 1.40489 * 119.66544 * 180.02562 * 3 2 1 6 6 C 1.47159 * 120.18586 * 179.97438 * 5 3 2 7 7 O 1.21542 * 120.00311 * 354.15095 * 6 5 3 8 8 O 1.34782 * 120.00321 * 174.14735 * 6 5 3 9 9 C 1.45192 * 117.00424 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.47123 * 329.99726 * 9 8 6 11 11 C 1.53005 * 109.47458 * 89.99968 * 9 8 6 12 12 C 1.50701 * 109.47399 * 209.99906 * 9 8 6 13 13 O 1.21283 * 119.99784 * 0.02562 * 12 9 8 14 14 N 1.34775 * 120.00345 * 179.97438 * 12 9 8 15 15 C 1.46498 * 119.99818 * 0.02562 * 14 12 9 16 16 C 1.46501 * 120.00005 * 180.02562 * 14 12 9 17 17 C 1.50696 * 109.47251 * 90.00235 * 16 14 12 18 18 H 1.08000 * 120.00336 * 359.97438 * 17 16 14 19 19 C 1.37874 * 119.99990 * 180.02562 * 17 16 14 20 20 N 1.31521 * 120.00138 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00255 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47060 * 89.99504 * 21 19 17 23 23 H 1.48498 * 109.47401 * 210.00115 * 21 19 17 24 24 H 1.48503 * 109.46664 * 329.99609 * 21 19 17 25 25 C 1.39873 * 119.62307 * 0.02562 * 5 3 2 26 26 C 1.37604 * 119.94781 * 0.02562 * 25 5 3 27 27 C 1.38245 * 119.97373 * 180.25805 * 2 1 3 28 28 F 1.35103 * 119.81387 * 359.97438 * 27 2 1 29 29 H 1.09002 * 109.47068 * 89.99559 * 1 2 3 30 30 H 1.09004 * 109.47014 * 210.00018 * 1 2 3 31 31 H 1.09006 * 109.46746 * 329.99733 * 1 2 3 32 32 H 0.96991 * 120.00216 * 185.53354 * 4 3 2 33 33 H 0.97002 * 119.99452 * 5.52892 * 4 3 2 34 34 H 1.09000 * 109.46726 * 59.99910 * 11 9 8 35 35 H 1.08994 * 109.47045 * 180.02562 * 11 9 8 36 36 H 1.09003 * 109.46662 * 300.00276 * 11 9 8 37 37 H 1.08998 * 109.47239 * 90.00329 * 15 14 12 38 38 H 1.09000 * 109.47245 * 210.00186 * 15 14 12 39 39 H 1.08997 * 109.47338 * 329.99531 * 15 14 12 40 40 H 1.09004 * 109.46699 * 210.00029 * 16 14 12 41 41 H 1.08999 * 109.47021 * 329.99859 * 16 14 12 42 42 H 0.96997 * 120.00442 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.02293 * 179.97438 * 25 5 3 44 44 H 1.07999 * 119.83083 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.2026 0.0000 4 7 1.5096 2.4067 -0.0005 5 6 3.6056 1.1949 -0.0005 6 6 4.3524 2.4629 -0.0011 7 8 3.7586 3.5180 -0.1084 8 8 5.6950 2.4544 0.1174 9 6 6.3657 3.7421 0.1097 10 1 5.7930 4.4465 -0.4938 11 6 6.4751 4.2688 1.5420 12 6 7.7459 3.5862 -0.4750 13 8 8.1266 2.4970 -0.8488 14 7 8.5568 4.6572 -0.5834 15 6 8.0967 5.9729 -0.1323 16 6 9.8983 4.5057 -1.1522 17 6 9.8385 4.7163 -2.6432 18 1 8.8954 4.9401 -3.1196 19 6 10.9875 4.6221 -3.3994 20 7 12.1359 4.3490 -2.8194 21 14 10.9132 4.8824 -5.2477 22 1 11.1263 6.3197 -5.5541 23 1 11.9718 4.0740 -5.9044 24 1 9.5825 4.4602 -5.7539 25 6 4.2903 -0.0247 -0.0016 26 6 3.5869 -1.2074 -0.0027 27 6 2.1977 -1.1975 -0.0054 28 9 1.5179 -2.3650 -0.0101 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.9933 3.2435 -0.0815 33 1 0.5429 2.4110 0.0800 34 1 7.0478 3.5645 2.1453 35 1 6.9782 5.2357 1.5361 36 1 5.4768 4.3816 1.9649 37 1 8.3587 6.1094 0.9169 38 1 8.5742 6.7494 -0.7300 39 1 7.0150 6.0390 -0.2484 40 1 10.5668 5.2431 -0.7077 41 1 10.2712 3.5034 -0.9415 42 1 12.9443 4.2831 -3.3513 43 1 5.3702 -0.0382 -0.0025 44 1 4.1176 -2.1481 -0.0039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781796081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:40 Heat of formation + Delta-G solvation = -128.793902 kcal Electronic energy + Delta-G solvation = -29191.879998 eV Core-core repulsion = 24831.350896 eV Total energy + Delta-G solvation = -4360.529102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.25925 -40.99561 -39.62979 -38.66410 -36.53099 -34.98723 -34.88216 -33.00956 -32.68836 -31.54472 -29.56399 -27.69532 -27.21025 -26.28220 -24.88013 -23.88787 -22.41598 -22.08398 -20.92710 -18.93085 -18.18152 -18.10320 -17.61390 -16.97134 -16.54165 -16.22037 -16.02897 -15.84935 -15.54858 -15.40928 -15.27162 -14.62332 -14.38507 -13.96284 -13.83975 -13.60443 -13.56338 -13.33601 -13.09586 -12.90399 -12.55254 -12.46399 -12.38961 -12.20896 -12.11649 -11.68426 -11.48291 -11.38999 -11.17147 -10.94401 -10.92634 -10.74677 -10.60422 -10.55052 -10.18906 -9.67469 -9.02727 -8.93728 -8.46816 -7.98809 -7.75841 -6.07877 -4.12928 0.41605 1.16367 2.28909 2.43367 3.22892 3.28771 3.35764 3.40892 3.42165 3.45237 3.84573 4.00627 4.34767 4.41785 4.49877 4.60862 4.79164 4.87059 4.95568 5.06651 5.11384 5.18569 5.23310 5.26846 5.43488 5.50348 5.58782 5.63135 5.69870 5.78106 5.81177 5.89262 5.96130 6.00863 6.19009 6.28324 6.49716 6.94661 7.03597 7.36354 7.43042 7.50822 7.71966 7.88096 8.17719 8.25970 8.81839 8.96642 9.52297 11.00260 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.002549 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.113630 B =10980.946596 C =11651.370367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.226 4.226 3 C 0.314 3.686 4 N -0.847 5.847 5 C -0.226 4.226 6 C 0.526 3.474 7 O -0.528 6.528 8 O -0.317 6.317 9 C 0.071 3.929 10 H 0.107 0.893 11 C -0.175 4.175 12 C 0.509 3.491 13 O -0.519 6.519 14 N -0.595 5.595 15 C 0.076 3.924 16 C 0.247 3.753 17 C -0.529 4.529 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.020 3.980 26 C -0.227 4.227 27 C 0.183 3.817 28 F -0.132 7.132 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.420 0.580 33 H 0.396 0.604 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.264 0.736 43 H 0.153 0.847 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.252 -4.286 10.240 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.231 4.231 3 C 0.200 3.800 4 N -0.395 5.395 5 C -0.233 4.233 6 C 0.375 3.625 7 O -0.421 6.421 8 O -0.231 6.231 9 C 0.013 3.987 10 H 0.125 0.875 11 C -0.232 4.232 12 C 0.293 3.707 13 O -0.394 6.394 14 N -0.329 5.329 15 C -0.068 4.068 16 C 0.128 3.872 17 C -0.568 4.568 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.199 1.199 25 C 0.002 3.998 26 C -0.247 4.247 27 C 0.163 3.837 28 F -0.110 7.110 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.263 0.737 33 H 0.226 0.774 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.171 0.829 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.932 -4.536 9.964 24.512 hybrid contribution -0.295 0.457 -1.093 1.221 sum -22.227 -4.080 8.871 24.277 Atomic orbital electron populations 1.20491 0.89738 1.02941 1.02587 1.19138 0.96904 0.90335 1.16765 1.17112 0.88906 0.86553 0.87429 1.43543 1.10303 1.07161 1.78486 1.18454 0.90636 0.91790 1.22373 1.20858 0.81302 0.88759 0.71626 1.90435 1.68717 1.33544 1.49355 1.86660 1.19622 1.34320 1.82477 1.22643 0.93206 0.83594 0.99291 0.87527 1.22406 1.03552 1.03218 0.94068 1.19754 0.85396 0.85417 0.80149 1.90707 1.74744 1.25649 1.48338 1.48057 1.17674 1.06382 1.60789 1.21886 0.99278 0.86504 0.99155 1.19357 0.75758 0.98857 0.93209 1.21418 0.94329 1.48752 0.92287 0.92429 1.24931 0.95218 0.94969 0.98919 1.69927 0.98825 1.48512 1.36015 0.86485 0.77929 0.77992 0.84969 1.20608 1.21018 1.19863 1.21219 1.01153 0.89550 0.87915 1.20850 0.91623 1.00014 1.12254 1.17507 0.89772 0.80297 0.96156 1.91497 1.80278 1.46212 1.93021 0.91102 0.90923 0.91700 0.73749 0.77403 0.90939 0.88837 0.91373 0.92998 0.90307 0.92295 0.94587 0.93606 0.92636 0.82916 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 9.43 36.01 0.34 -0.36 16 2 C -0.23 -2.21 5.90 -104.40 -0.62 -2.82 16 3 C 0.31 3.44 6.74 -83.62 -0.56 2.87 16 4 N -0.85 -7.84 8.84 32.54 0.29 -7.55 16 5 C -0.23 -2.88 5.89 -104.82 -0.62 -3.49 16 6 C 0.53 7.74 7.84 34.35 0.27 8.00 16 7 O -0.53 -7.78 12.90 -19.30 -0.25 -8.03 16 8 O -0.32 -5.23 8.68 -47.40 -0.41 -5.64 16 9 C 0.07 1.15 2.18 -27.88 -0.06 1.09 16 10 H 0.11 1.66 6.42 -51.93 -0.33 1.32 16 11 C -0.18 -2.20 9.19 37.16 0.34 -1.86 16 12 C 0.51 10.71 7.15 -10.99 -0.08 10.63 16 13 O -0.52 -13.26 16.08 -14.11 -0.23 -13.49 16 14 N -0.60 -12.39 2.86 -182.96 -0.52 -12.91 16 15 C 0.08 1.14 8.80 59.85 0.53 1.67 16 16 C 0.25 6.35 5.16 -5.19 -0.03 6.32 16 17 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 18 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 21 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.02 0.24 9.60 -39.20 -0.38 -0.14 16 26 C -0.23 -2.33 10.00 -39.56 -0.40 -2.73 16 27 C 0.18 1.89 7.24 -39.32 -0.28 1.61 16 28 F -0.13 -1.34 16.45 2.25 0.04 -1.30 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.48 7.63 -51.93 -0.40 0.08 16 31 H 0.06 0.34 6.48 -51.93 -0.34 0.00 16 32 H 0.42 4.47 5.34 -40.96 -0.22 4.25 16 33 H 0.40 2.52 6.78 -40.82 -0.28 2.24 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.03 4.53 -51.93 -0.24 0.79 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.64 6.95 -51.93 -0.36 0.28 16 38 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 39 H 0.06 0.74 6.01 -51.93 -0.31 0.43 16 40 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 41 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.15 1.80 7.62 -52.49 -0.40 1.40 16 44 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 369.85 15.07 5.57 5.57 Total: -1.00 -33.80 369.85 -7.09 -40.88 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.33 Total: 4.03 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -1.96 Total: 7.24 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.50 Total: -46.05 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.89 Total: -27.16 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.80 -7.09 -40.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781796081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.910 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds