Wall clock time and date at job start Tue Mar 31 2020 21:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38829 * 119.97742 * 2 1 4 4 N 1.38835 * 120.16767 * 359.97438 * 3 2 1 5 5 C 1.40489 * 119.66544 * 180.02562 * 3 2 1 6 6 C 1.47159 * 120.18586 * 179.97438 * 5 3 2 7 7 O 1.21542 * 120.00311 * 354.15095 * 6 5 3 8 8 O 1.34782 * 120.00321 * 174.14735 * 6 5 3 9 9 C 1.45192 * 117.00424 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.47123 * 329.99726 * 9 8 6 11 11 C 1.53005 * 109.47458 * 89.99968 * 9 8 6 12 12 C 1.50701 * 109.47399 * 209.99906 * 9 8 6 13 13 O 1.21283 * 119.99784 * 0.02562 * 12 9 8 14 14 N 1.34775 * 120.00345 * 179.97438 * 12 9 8 15 15 C 1.46498 * 119.99818 * 0.02562 * 14 12 9 16 16 C 1.46501 * 120.00005 * 180.02562 * 14 12 9 17 17 C 1.50696 * 109.47251 * 90.00235 * 16 14 12 18 18 H 1.08000 * 120.00336 * 359.97438 * 17 16 14 19 19 C 1.37874 * 119.99990 * 180.02562 * 17 16 14 20 20 N 1.31521 * 120.00138 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00255 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47060 * 89.99504 * 21 19 17 23 23 H 1.48498 * 109.47401 * 210.00115 * 21 19 17 24 24 H 1.48503 * 109.46664 * 329.99609 * 21 19 17 25 25 C 1.39873 * 119.62307 * 0.02562 * 5 3 2 26 26 C 1.37604 * 119.94781 * 0.02562 * 25 5 3 27 27 C 1.38245 * 119.97373 * 180.25805 * 2 1 3 28 28 F 1.35103 * 119.81387 * 359.97438 * 27 2 1 29 29 H 1.09002 * 109.47068 * 89.99559 * 1 2 3 30 30 H 1.09004 * 109.47014 * 210.00018 * 1 2 3 31 31 H 1.09006 * 109.46746 * 329.99733 * 1 2 3 32 32 H 0.96991 * 120.00216 * 185.53354 * 4 3 2 33 33 H 0.97002 * 119.99452 * 5.52892 * 4 3 2 34 34 H 1.09000 * 109.46726 * 59.99910 * 11 9 8 35 35 H 1.08994 * 109.47045 * 180.02562 * 11 9 8 36 36 H 1.09003 * 109.46662 * 300.00276 * 11 9 8 37 37 H 1.08998 * 109.47239 * 90.00329 * 15 14 12 38 38 H 1.09000 * 109.47245 * 210.00186 * 15 14 12 39 39 H 1.08997 * 109.47338 * 329.99531 * 15 14 12 40 40 H 1.09004 * 109.46699 * 210.00029 * 16 14 12 41 41 H 1.08999 * 109.47021 * 329.99859 * 16 14 12 42 42 H 0.96997 * 120.00442 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.02293 * 179.97438 * 25 5 3 44 44 H 1.07999 * 119.83083 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.2026 0.0000 4 7 1.5096 2.4067 -0.0005 5 6 3.6056 1.1949 -0.0005 6 6 4.3524 2.4629 -0.0011 7 8 3.7586 3.5180 -0.1084 8 8 5.6950 2.4544 0.1174 9 6 6.3657 3.7421 0.1097 10 1 5.7930 4.4465 -0.4938 11 6 6.4751 4.2688 1.5420 12 6 7.7459 3.5862 -0.4750 13 8 8.1266 2.4970 -0.8488 14 7 8.5568 4.6572 -0.5834 15 6 8.0967 5.9729 -0.1323 16 6 9.8983 4.5057 -1.1522 17 6 9.8385 4.7163 -2.6432 18 1 8.8954 4.9401 -3.1196 19 6 10.9875 4.6221 -3.3994 20 7 12.1359 4.3490 -2.8194 21 14 10.9132 4.8824 -5.2477 22 1 11.1263 6.3197 -5.5541 23 1 11.9718 4.0740 -5.9044 24 1 9.5825 4.4602 -5.7539 25 6 4.2903 -0.0247 -0.0016 26 6 3.5869 -1.2074 -0.0027 27 6 2.1977 -1.1975 -0.0054 28 9 1.5179 -2.3650 -0.0101 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.9933 3.2435 -0.0815 33 1 0.5429 2.4110 0.0800 34 1 7.0478 3.5645 2.1453 35 1 6.9782 5.2357 1.5361 36 1 5.4768 4.3816 1.9649 37 1 8.3587 6.1094 0.9169 38 1 8.5742 6.7494 -0.7300 39 1 7.0150 6.0390 -0.2484 40 1 10.5668 5.2431 -0.7077 41 1 10.2712 3.5034 -0.9415 42 1 12.9443 4.2831 -3.3513 43 1 5.3702 -0.0382 -0.0025 44 1 4.1176 -2.1481 -0.0039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781796081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:39 Heat of formation + Delta-G solvation = -149.512260 kcal Electronic energy + Delta-G solvation = -29192.778414 eV Core-core repulsion = 24831.350896 eV Total energy + Delta-G solvation = -4361.427518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.06566 -42.11077 -40.90438 -39.90068 -37.71025 -36.72975 -35.72531 -34.92253 -33.62537 -32.86482 -30.44226 -29.53459 -27.92059 -27.72842 -26.13104 -25.36367 -23.89986 -22.89381 -22.04115 -20.47262 -19.18778 -18.91945 -18.72621 -18.53043 -18.23302 -17.45906 -17.21675 -17.07364 -16.78026 -16.46967 -16.23541 -16.19950 -15.87236 -15.03660 -14.94297 -14.58070 -14.51444 -14.36450 -14.24190 -14.13580 -13.90689 -13.72070 -13.53692 -13.34228 -13.23724 -13.02621 -12.99002 -12.82474 -12.59810 -12.42426 -12.24026 -12.21123 -11.95160 -11.74250 -11.72375 -11.62603 -10.65206 -10.62564 -9.85597 -9.51983 -8.77791 -8.24445 -6.38939 -0.49395 0.34243 1.21293 1.29286 1.35859 1.38962 1.48903 1.62091 2.30885 2.43148 2.53885 2.66444 3.05604 3.19133 3.39039 3.50375 3.58137 3.76630 3.84346 3.86028 4.07211 4.31004 4.35102 4.43425 4.57009 4.62726 4.68057 4.71998 4.74804 4.86742 4.91444 4.95327 5.07145 5.10607 5.13307 5.17267 5.19015 5.24125 5.50604 5.68892 5.77507 6.02790 6.24045 6.51140 6.62520 6.69933 6.83719 7.20093 7.35404 8.82845 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.002549 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.113630 B =10980.946596 C =11651.370367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.220 4.220 3 C 0.312 3.688 4 N -0.838 5.838 5 C -0.247 4.247 6 C 0.522 3.478 7 O -0.532 6.532 8 O -0.336 6.336 9 C 0.081 3.919 10 H 0.118 0.882 11 C -0.167 4.167 12 C 0.499 3.501 13 O -0.578 6.578 14 N -0.599 5.599 15 C 0.067 3.933 16 C 0.260 3.740 17 C -0.546 4.546 18 H 0.051 0.949 19 C 0.010 3.990 20 N -0.926 5.926 21 Si 0.966 3.034 22 H -0.262 1.262 23 H -0.280 1.280 24 H -0.275 1.275 25 C 0.010 3.990 26 C -0.225 4.225 27 C 0.179 3.821 28 F -0.129 7.129 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.416 0.584 33 H 0.411 0.589 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.034 0.966 41 H 0.001 0.999 42 H 0.268 0.732 43 H 0.143 0.857 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.834 -3.237 10.380 27.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.226 4.226 3 C 0.197 3.803 4 N -0.385 5.385 5 C -0.254 4.254 6 C 0.372 3.628 7 O -0.425 6.425 8 O -0.251 6.251 9 C 0.023 3.977 10 H 0.136 0.864 11 C -0.223 4.223 12 C 0.286 3.714 13 O -0.458 6.458 14 N -0.331 5.331 15 C -0.074 4.074 16 C 0.139 3.861 17 C -0.585 4.585 18 H 0.070 0.930 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.791 3.209 22 H -0.186 1.186 23 H -0.205 1.205 24 H -0.200 1.200 25 C -0.009 4.009 26 C -0.245 4.245 27 C 0.158 3.842 28 F -0.108 7.108 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.257 0.743 33 H 0.243 0.757 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.052 0.948 41 H 0.019 0.981 42 H 0.077 0.923 43 H 0.161 0.839 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -24.570 -3.434 10.135 26.799 hybrid contribution 0.448 0.090 -1.103 1.194 sum -24.121 -3.344 9.032 25.973 Atomic orbital electron populations 1.20609 0.87494 1.04229 1.03565 1.19418 0.98462 0.89532 1.15190 1.17165 0.88323 0.87500 0.87319 1.43486 1.11103 1.06322 1.77614 1.18524 0.91458 0.91143 1.24245 1.21186 0.80581 0.89565 0.71504 1.90421 1.68520 1.33731 1.49791 1.86663 1.20878 1.34565 1.82958 1.22549 0.89888 0.83958 1.01351 0.86440 1.22415 1.04993 1.03700 0.91231 1.20660 0.87106 0.84440 0.79203 1.90666 1.76352 1.27904 1.50879 1.48031 1.16081 1.08796 1.60216 1.22253 1.01102 0.83186 1.00900 1.18846 0.78501 0.96080 0.92660 1.21683 0.94219 1.48931 0.93617 0.93025 1.25823 0.94817 0.94495 1.03808 1.70037 0.99503 1.49122 1.37880 0.85437 0.77686 0.78822 0.78998 1.18647 1.20548 1.20043 1.21159 1.00832 0.89992 0.88902 1.20987 0.91940 1.00113 1.11506 1.17600 0.89793 0.80651 0.96117 1.91504 1.80166 1.46120 1.92976 0.90158 0.90344 0.89796 0.74295 0.75665 0.91446 0.86862 0.89330 0.89576 0.90703 0.89214 0.94811 0.98085 0.92294 0.83920 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 9.43 71.24 0.67 -0.46 16 2 C -0.22 -3.89 5.90 -19.72 -0.12 -4.01 16 3 C 0.31 6.39 6.74 38.72 0.26 6.65 16 4 N -0.84 -13.81 8.84 -50.95 -0.45 -14.26 16 5 C -0.25 -6.23 5.89 -19.99 -0.12 -6.35 16 6 C 0.52 15.19 7.84 70.16 0.55 15.74 16 7 O -0.53 -15.01 12.90 19.70 0.25 -14.75 16 8 O -0.34 -11.23 8.68 -50.54 -0.44 -11.67 16 9 C 0.08 2.57 2.18 29.85 0.07 2.63 16 10 H 0.12 3.47 6.42 -2.38 -0.02 3.45 16 11 C -0.17 -3.83 9.19 71.98 0.66 -3.17 16 12 C 0.50 21.52 7.15 87.66 0.63 22.14 16 13 O -0.58 -31.19 16.08 15.76 0.25 -30.94 16 14 N -0.60 -25.18 2.86 -851.14 -2.43 -27.61 16 15 C 0.07 1.89 8.80 127.77 1.12 3.02 16 16 C 0.26 13.89 5.16 85.63 0.44 14.34 16 17 C -0.55 -31.46 9.39 25.60 0.24 -31.22 16 18 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 19 C 0.01 0.57 5.46 84.65 0.46 1.03 16 20 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 21 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 C 0.01 0.24 9.60 22.52 0.22 0.45 16 26 C -0.22 -4.52 10.00 22.29 0.22 -4.29 16 27 C 0.18 3.45 7.24 22.44 0.16 3.61 16 28 F -0.13 -2.41 16.45 44.97 0.74 -1.67 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.81 7.63 -2.38 -0.02 0.79 16 31 H 0.08 0.60 6.48 -2.38 -0.02 0.59 16 32 H 0.42 8.10 5.34 -94.84 -0.51 7.60 16 33 H 0.41 4.11 6.78 -92.71 -0.63 3.48 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.11 2.11 4.53 -2.39 -0.01 2.10 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.09 1.87 6.95 -2.39 -0.02 1.86 16 38 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 39 H 0.09 1.99 6.01 -2.39 -0.01 1.98 16 40 H 0.03 1.79 8.07 -2.38 -0.02 1.77 16 41 H 0.00 0.06 7.42 -2.39 -0.02 0.05 16 42 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 43 H 0.14 3.61 7.62 -2.91 -0.02 3.59 16 44 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -76.30 369.85 5.65 -70.65 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -0.06 Total: 18.51 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 5.47 Total: 20.12 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -2.60 Total: -97.25 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: 0.07 Total: -57.36 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.74 Total: -1.67 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -76.30 5.65 -70.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781796081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.864 kcal (2) G-P(sol) polarization free energy of solvation -76.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds